Dickeya solani IPO 2222: A4U42_09885
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Entry
A4U42_09885 CDS
T04410
Name
(GenBank) DNA-formamidopyrimidine glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
dso
Dickeya solani IPO 2222
Pathway
dso03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
dso00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
A4U42_09885
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dso03400
]
A4U42_09885
Enzymes [BR:
dso01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
A4U42_09885
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
A4U42_09885
DNA repair and recombination proteins [BR:
dso03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
A4U42_09885
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
Motif
Other DBs
NCBI-ProteinID:
ANE75625
LinkDB
All DBs
Position
2339434..2340243
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AA seq
269 aa
AA seq
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MPELPEVETSRRGISPWLVGHTILYAEVRNARLRWPVSPEILSLSDTPVLSVQRRAKYLL
IELPTGWIIVHLGMSGSLRVLPEYSEPDKHDHVDLVMDSGKVLRYTDPRRFGAWLWCDDL
ATSSVLAHLGPEPLSDDFSDRYLFAQSRGRKTPVKLWIMDNKLVVGVGNIYASESLFNAG
ILPNRPAGSLSEVEADQLVRSIKQVLQRSIEQGGTTLRDFLQSDGKPGYFAQELQVYGRS
GEPCHHCGTPIESIKQGQRSTFFCKCCQH
NT seq
810 nt
NT seq
+upstream
nt +downstream
nt
atgccagaattacccgaagtggaaaccagtcgccggggcatttcaccctggctggtcggt
cataccattttgtatgccgaggtgcgtaacgcgcgcctgcgctggccggtctctcctgaa
attctgtcgctgagcgatacgccggtgctgagtgtgcagcggcgcgccaaatacctgctg
attgagctgccgactggctggataatcgtacatctgggcatgtccggcagtctgcgggtg
ttgccggaatacagcgagccggataagcatgaccatgtcgatctggtaatggacagcggt
aaggtgctgcgttataccgacccgcgtcgtttcggtgcctggctgtggtgcgatgatctg
gcgaccagttcggtgctggcgcatctggggccggaaccgctgagcgacgatttttccgac
cgctatctgttcgcccaatctcgcgggcgtaaaacgccggtcaagctgtggattatggac
aacaagctggtggtgggcgtcggcaacatctacgccagcgagtcgctgtttaatgccggt
attctgccgaaccgaccggcgggttcgttgtctgaggttgaagcggaccaactggtacgt
tccatcaaacaggtattgcaacgctcgattgagcaaggcggcaccacgctgcgggatttc
ctgcagtccgatggcaaaccgggttattttgcgcaggagttacaggtctatggccgcagc
ggcgagccctgtcaccattgcggcacgccgattgagagcatcaagcagggccagcgcagc
acttttttctgtaaatgttgtcagcattaa
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