Dickeya solani IPO 2222: A4U42_09945
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Entry
A4U42_09945 CDS
T04410
Symbol
rfaD
Name
(GenBank) ADP-glyceromanno-heptose 6-epimerase
KO
K03274
ADP-L-glycero-D-manno-heptose 6-epimerase [EC:
5.1.3.20
]
Organism
dso
Dickeya solani IPO 2222
Pathway
dso00541
Biosynthesis of various nucleotide sugars
dso01100
Metabolic pathways
dso01250
Biosynthesis of nucleotide sugars
Module
dso_M00064
ADP-L-glycero-D-manno-heptose biosynthesis, sedoheptulose-7P => ADP-LDmanHep
Brite
KEGG Orthology (KO) [BR:
dso00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 Biosynthesis of various nucleotide sugars
A4U42_09945 (rfaD)
09180 Brite Hierarchies
09181 Protein families: metabolism
01005 Lipopolysaccharide biosynthesis proteins [BR:
dso01005
]
A4U42_09945 (rfaD)
Enzymes [BR:
dso01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.3 Acting on carbohydrates and derivatives
5.1.3.20 ADP-glyceromanno-heptose 6-epimerase
A4U42_09945 (rfaD)
Lipopolysaccharide biosynthesis proteins [BR:
dso01005
]
Core region
A4U42_09945 (rfaD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Epimerase
GDP_Man_Dehyd
3Beta_HSD
RmlD_sub_bind
NAD_binding_4
Polysacc_synt_2
ThiF
adh_short
KR
NAD_binding_10
Motif
Other DBs
NCBI-ProteinID:
ANE75636
LinkDB
All DBs
Position
complement(2352179..2353111)
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AA seq
310 aa
AA seq
DB search
MIIVTGGAGFIGSNIVKALNDAGYRDILVVDNLKDGTKFANLVDLDIADYMDKEDFLASI
VAGDDLGDIDVIFHEGACSSTTEWDGKYMMDNNYQYSKDVLHYCLERGIPFLYASSAATY
GGRTDNFVEDRQYEQPLNVYGYSKFLFDQYVREILPQTSSQICGFRYFNVYGPREGHKGS
MASVAFHLNNQINQGEKPKLFAGSENFKRDFIYVGDVAAVNLWFWQHEVSGIFNCGTGRA
ESFQAVADAVLAYHQKDDVESIPFPEKLKGRYQAYTQADLTNLRAAGYDKPFKTVAEGVT
DYLAWLNRNA
NT seq
933 nt
NT seq
+upstream
nt +downstream
nt
atgattatcgtaactggcggcgcgggtttcatcggcagcaatatcgtgaaggcgctgaat
gacgcagggtaccgggatattctggtggtcgacaaccttaaggatggcaccaagttcgcc
aatctggtcgatctggacatcgccgactacatggataaggaagacttcctcgccagtatc
gtcgccggtgacgatctgggcgatatcgatgtcattttccacgaaggcgcctgttcctcc
accaccgagtgggacggtaagtacatgatggataataactatcagtactccaaagacgtg
ctgcactactgcctggaacgtggaattccattcctgtacgcctcttccgccgctacctac
ggcggccgcaccgacaactttgtggaagaccgtcagtatgagcagccgttgaacgtctac
ggctattccaagttcctgttcgaccagtatgtgcgtgaaattctgccgcagaccagctca
caaatttgcggctttcgctacttcaacgtctacgggccgcgcgaaggccacaaaggcagc
atggccagcgtggcgttccacctgaataaccagatcaatcagggtgagaaacccaaactg
ttcgccggcagcgaaaacttcaaacgcgattttatctatgtcggcgacgtggcggcggtg
aacctgtggttctggcaacacgaagtttccggtattttcaactgcggtaccgggcgcgcc
gagtccttccaggccgtggcggatgccgtactggcctaccaccagaaagacgatgtagag
tccatccccttcccggaaaaactgaaaggccgctatcaggcctacacgcaggcagacctc
accaacctgcgcgccgcgggttatgacaaaccgttcaaaaccgtagcggaaggggtcacc
gactatctggcctggctgaaccgcaacgcctga
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