Dickeya solani IPO 2222: A4U42_12305
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Entry
A4U42_12305 CDS
T04410
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
dso
Dickeya solani IPO 2222
Pathway
dso03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dso00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A4U42_12305
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dso03019
]
A4U42_12305
03016 Transfer RNA biogenesis [BR:
dso03016
]
A4U42_12305
Enzymes [BR:
dso01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
A4U42_12305
Messenger RNA biogenesis [BR:
dso03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
A4U42_12305
Transfer RNA biogenesis [BR:
dso03016
]
Prokaryotic type
tRNA degradation factors
A4U42_12305
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
RNase_PH_C
KH_1
S1_2
OB_RRP5_4th
KH_2
aRib
S1_RRP5
KH-I_KHDC4-BBP
KH_SLS1_2
Motif
Other DBs
NCBI-ProteinID:
ANE76047
LinkDB
All DBs
Position
2850284..2852404
Genome browser
AA seq
706 aa
AA seq
DB search
MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGAKQAKPGQDFFPLT
VNYQERTYAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDGFVNEVQVIATVVSV
NPQINPDIVAMIGASAALSLSGIPFNGPIGSARVGYINDQYVLNPTTEELKTSRLDLVVA
GTEGAVLMVESEADLLSEDQMLGAVVFGHDQQQIVIENIKSLTAEAGKPKWNWQAPEINV
ELHNRVQALSETRLGDAYRITEKQQRYAQVDTIKSDVTAALLAEDGTLDENELRDILGSI
EKNVVRSRVLSGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTER
DAQIIDELIGERTDRFLLHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKPEA
FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSD
ILGDEDHLGDMDFKVAGSREGVTALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQA
ISTPRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAST
DGEKAKHAIRRIEEITAEIEVGRIYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE
KVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEATAQSQETIQVSEEE
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
ttgcttaatccgatcgttcgtaaattccagtacggtcagcataccgtgacactagaaacc
ggtatgatggctcgtcaggctactgctgctgtaatggtcagcatggatgacaccgcggta
ttcgtgaccgtggtgggtgccaaacaagccaagccgggtcaggactttttcccgttgacc
gttaactatcaggagcgtacctacgctgctggccgtatccccggcagttttttccgtcgt
gaaggccgtccgagcgaaggtgaaacgctgacttcccgtctgatcgaccgtccgattcgt
ccgctgttcccggatggtttcgttaatgaagtacaggttatcgccactgtggtttctgtt
aatccgcagattaacccggatatcgttgccatgatcggtgcttctgctgcgctgagtctg
tccggcattccgttcaacggcccgattggctcggctcgcgttggttacatcaacgaccag
tatgtgctgaacccgactaccgaagaactgaaaaccagtcgtctggatctggtggtcgcc
ggtacggaaggcgcggtgctgatggtagagtccgaagcggatctgctgagcgaagaccag
atgctgggcgcggtagtgtttggtcacgaccagcagcagattgttatcgaaaatatcaag
tcgctgacggcggaagccggcaagccgaagtggaactggcaggcgccggaaattaatgtc
gaactgcacaaccgcgtgcaggcgctgtctgaaactcgtctgggcgatgcctatcgcatc
accgaaaaacagcagcgttacgctcaggttgataccatcaaatccgatgtgactgcggct
ctgttggcggaagatggcacgctggacgagaacgaactgcgcgatattctcggcagcatc
gagaagaatgtggtgcgtagccgtgtactgagcggcgaaccgcgcatcgacggccgtgaa
aaagacatgatccgtggcctggatgttcgtaccggcgtactgccgcgtactcacggttcc
gcactgtttacccgtggtgaaactcaggcgctggttaccgcgacgctgggtaccgagcgt
gacgcacagattattgacgaactgatcggcgaacgtaccgatcgcttcctgctgcactac
aacttcccgccgtactccgtgggcgaaaccggtatggtcgggtcgccgaagcgccgtgaa
atcggtcacggtcgtctggctaaacgtggcgtgttggctgtgatgccgaaaccggaagct
ttcccgtacaccgtgcgtgtggtatccgaaatcactgagtccaatggttcttcttctatg
gcgtccgtgtgcggcgcgtcgctggcgctgatggatgccggtgtgccaatcaaagctgcc
gttgctggtatcgcgatgggcctggtaaaagaaggcgacaactacgttgtgctgtcagac
atcctgggggacgaagaccacctgggcgacatggacttcaaagttgccggtagccgtgaa
ggcgtgactgcgctgcagatggacatcaaaatcgaaggcatcacccgcgaaatcatgcag
gtggcgctgaatcaggctaagggtgcgcgtctgcacattctgggcgtgatggaacaggcc
attagcacgccgcgtggcgatatctccgaattcgcaccgcgtattcacaccatcaagatc
agcaccgacaagatcaaagatgtgattggtaaaggtggttcggtgatccgtgcgctgacc
gaagaaaccggcaccaccatcgagatcgaagacgacggcacggtgaaaatcgcatcgacc
gacggtgaaaaagcgaaacatgctattcgtcgtatcgaagagatcacggctgaaatcgaa
gtgggccgtatctatcagggtaaagtgacccgcatcgttgactttggcgcctttgtagcc
atcggcggcggtaaagaaggtctggtacatatttctcagatcgccgacaagcgcgttgag
aaagtgaccgactatctgcagatgggccaggaagtaccggtcaaggtactggaagtggat
cgtcagggccgtgtccgtttgagcataaaagaagcaactgctcaatctcaggaaactatt
caggtttccgaagaagaataa
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