Dickeya solani IPO 2222: A4U42_12725
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Entry
A4U42_12725 CDS
T04410
Name
(GenBank) RNA polymerase subunit sigma
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
dso
Dickeya solani IPO 2222
Pathway
dso02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
dso00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
A4U42_12725
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dso03021
]
A4U42_12725
Transcription machinery [BR:
dso03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
A4U42_12725
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4_2
Sigma70_r4
GerE
Sigma70_ECF
HTH_23
HTH_3
HTH_28
HTH_11
HTH_31
Motif
Other DBs
NCBI-ProteinID:
ANE77809
LinkDB
All DBs
Position
2945319..2945792
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AA seq
157 aa
AA seq
DB search
MQQIYSEHHSWLQGWLRRRLGCSQQAADLAQDTFLRLLTHFPAEPIREPRAWLSTVAHGL
MVNHWRRKDLEQAYLQMLASQEFVVSPSPEAQAMIVDALVEIDALLSSLSSKARQAFLWV
QLEGLTYRQVAERLMVSERMVKKYMAQAMLTCLTAQA
NT seq
474 nt
NT seq
+upstream
nt +downstream
nt
gtgcagcagatctattccgagcaccattcctggttgcagggatggctgcggcgtcgcctc
ggctgttcccagcaggcggcggatctggcgcaggatacctttctgcggttgctgactcac
tttcccgccgaaccgatccgtgagccgcgcgcctggctcagcaccgtggcgcatgggctg
atggtcaatcactggcggcgcaaagatctggaacaggcctatttgcagatgctggccagc
caggagtttgtggtcagcccatcgccggaagcgcaggcgatgatcgttgatgcgctggtg
gagatcgacgcgttgctgtcttcgctgtcgtccaaagcccgacaggcgttcctgtgggtg
cagctggaagggctgacctatcgtcaggtggcggaacgcctgatggtatcggagcgcatg
gtgaaaaagtacatggcgcaggccatgctgacctgcctgaccgcgcaagcctga
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integrated database retrieval system
