Dickeya solani IPO 2222: A4U42_19465
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Entry
A4U42_19465 CDS
T04410
Name
(GenBank) DNA topoisomerase I subunit omega
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
dso
Dickeya solani IPO 2222
Brite
KEGG Orthology (KO) [BR:
dso00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dso03032
]
A4U42_19465
03400 DNA repair and recombination proteins [BR:
dso03400
]
A4U42_19465
Enzymes [BR:
dso01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
A4U42_19465
DNA replication proteins [BR:
dso03032
]
Prokaryotic type
DNA Topoisomerases
A4U42_19465
DNA repair and recombination proteins [BR:
dso03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
A4U42_19465
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
E217_gp28
Toprim_2
Motif
Other DBs
NCBI-ProteinID:
ANE77332
LinkDB
All DBs
Position
4521683..4524286
Genome browser
AA seq
867 aa
AA seq
DB search
MGKALVIVESPAKAKTINKYLGNDFVVKSSVGHVRDLPTSGSGSASKKSTEANGEKAKKA
VKKDEKTALVNRMGVDPYRGWQANYEILPGKEKVVSELKALAQNADHVYLATDLDREGEA
IAWHLREIIGGDDKRFSRVVFNEITKNAIRQAFENPGELNVNRVNAQQARRFMDRVVGYM
VSPLLWKKIARGLSAGRVQSVAVRLVVEREREIKAFVPEEYWELHADLVANPEIALQMQV
THHNGKPFRPVNQAQTQAAVSLLEKASYVVAEREDKPTSSKPGAPFITSTLQQAASTRLG
FGVKKTMMMAQRLYEAGHITYMRTDSTNLSQDALAMARDYIQGEFGKRYLPEAATLYTSK
ENSQEAHEAIRPSDVNVLADQLKDMEADAQKLYQLIWRQFVACQMMPAQYDSTTLVVSAG
DYQLRAKGRTLRFDGWTKVMPALRKGDEDRTLPAAEVGQPLSLEKLLPSQHFTKPSARYS
EASLVKELEKRGIGRPSTYAAIISTIQDRGYVRVENRRFYAEKMGEIVTDRLEDNFRELM
NYDFTARMENSLDLVANSQAEWKAVLDEFFAEFSKQLETAELEPDEGGMKPNQMVLTSID
CPTCGRKMGIRTASTGVFLGCSGYALPPKERCKTTINLIPEEEVLNVLEGDEAETNALRA
RRRCSKCGTAMDSYLIDNQRKLHVCGNNPSCDGYEIEQGEFRLKGYDGPVVECEKCSSEM
HLKMGRFGKYMACTNESCGNTRKILRNGEVAPPKEDPVPLPELPCEKSDAYFVLRDGAAG
VFLAANTFPKSRETRAPLVEELARFRDRLPEKLRYLAEAPVADPEGNKTLVRFSRKTKQQ
YVSSEKEGKATGWSAFYVDGKWVESSR
NT seq
2604 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaagctctcgttatcgtcgagtccccggcaaaagccaaaacgattaataagtac
cttggcaatgatttcgtggtgaaatccagcgtggggcatgtacgcgacttgccgaccagc
ggctccggttcggcgagcaaaaaaagcactgaggccaacggcgagaaagccaaaaaagcg
gtcaagaaagatgagaaaaccgccttggtcaaccgtatgggggtggatccctatcgcggc
tggcaggctaactatgagatcctgcccggcaaggaaaaagtggtatcggaactgaaagcg
ctggcgcagaacgctgatcacgtctatctcgcaaccgaccttgaccgcgaaggggaagcc
attgcctggcacctgcgggaaatcatcggtggtgacgacaaacggttcagccgcgtggtg
ttcaacgagatcaccaaaaatgccattcgtcaggcgttcgagaatccgggcgaactgaat
gtcaaccgtgtcaacgcccagcaggcgcgccgttttatggaccgcgtggtgggttacatg
gtgtcaccgctgttgtggaaaaagattgcccgtgggctgtccgccgggcgcgtacagtcg
gtggcggtacgtctggtggtggaacgcgagcgcgaaatcaaagcgtttgtgccggaagaa
tactgggaattgcacgccgatctggtggcgaacccggaaatcgcgttgcagatgcaggta
acacatcacaacggcaaaccgttccggccggtgaatcaagcacagacgcaggcagcggtc
agcctgctggaaaaagccagttatgtggtggcagagcgggaagacaaaccgaccagcagc
aagccgggcgcgccgttcattacctctacgctacaacaggccgcgagcacccgactgggc
tttggtgtgaaaaagaccatgatgatggcgcagcggttgtatgaagccggccatatcact
tacatgcgtaccgactccaccaacctgagtcaggatgcgttggcgatggcgcgcgactat
atccagggtgaattcggcaaacgctatctaccggaagcggccactctttacaccagcaag
gaaaactcgcaggaagcgcacgaagccattcgtccttccgacgtgaatgtgctggccgac
caactcaaagatatggaagcggatgcgcaaaagctgtatcagctgatttggcgtcaattt
gtggcctgtcagatgatgccggctcaatatgattccaccacgctggtggtcagcgccggc
gactatcaactgcgagccaaagggcgcaccctccgcttcgacggctggaccaaagtgatg
ccagcgctgcgcaaaggtgatgaagaccgcacgctgccggccgccgaggtggggcaaccc
ctgtcgctggaaaaattgcttccaagccaacactttaccaagccgtcggcacgttacagc
gaagcgtcgctggtcaaggaactggaaaagcgcggtatcggccgtccttccacgtatgcc
gccatcatctccaccattcaggatcgtggttatgtgcgggtggaaaaccgccgtttctac
gcggagaagatgggggagatcgttaccgatcggctggaggataacttccgcgagctgatg
aactacgattttaccgctcgtatggaaaacagcctcgatctggtggcgaacagccaggcc
gagtggaaagcggtgctggatgaattcttcgccgaattcagcaaacagctggaaaccgct
gagctggagccggacgagggcggcatgaagccgaaccagatggtgctgaccagcattgat
tgtccgacctgcggtcgcaaaatgggtattcgtaccgccagcaccggggtgttcctcggt
tgttccggttacgcgctgccgcccaaagagcgctgcaaaaccaccatcaacctgattccg
gaagaggaagtgttgaatgtgttggaaggcgatgaggcggaaaccaatgcgctgcgtgcc
cgtcgccgctgctcgaaatgcggcacggcgatggacagctacctgatcgacaatcagcgc
aaactgcacgtgtgcggtaacaacccgtcctgcgatggttacgagatcgaacaaggcgag
ttccggctcaagggttatgacggcccggtggtggaatgcgagaagtgcagctcggaaatg
cacctgaaaatggggcgtttcggcaaatatatggcctgtaccaacgaaagctgcggcaat
acccgcaaaattctgcgtaacggggaagtggcgccgccgaaagaagatccggtgccattg
ccggagctgccgtgcgagaaatccgacgcttattttgtgctgcgcgatggcgccgccggc
gtgttcctggcggctaataccttcccgaaatcgcgggaaacccgcgcgccgttggtggaa
gaactggcgcgtttccgcgatcgtttgccggagaaattacgctatctggccgaggcgccg
gtggccgacccggaaggcaacaaaacgctggtgcgcttcagccgcaaaaccaaacagcag
tatgtttcctctgaaaaagagggtaaagctaccggatggtcggcattttatgtggacggc
aagtgggtggaaagcagtcgctaa
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