Dickeya solani IPO 2222: A4U42_20060
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Entry
A4U42_20060 CDS
T04410
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
dso
Dickeya solani IPO 2222
Pathway
dso03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
dso00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
A4U42_20060
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dso03400
]
A4U42_20060
Enzymes [BR:
dso01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
A4U42_20060
DNA repair and recombination proteins [BR:
dso03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
A4U42_20060
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
RecD_N
AAA_11
UvrD_C_2
Viral_helicase1
Helicase_RecD
SH3_13
AAA_22
UvrD-helicase
SLFN-g3_helicase
NTPase_1
AAA_28
T2SSE
nSTAND3
Zot
Mg_chelatase
Motif
Other DBs
NCBI-ProteinID:
ANE77439
LinkDB
All DBs
Position
complement(4668425..4670470)
Genome browser
AA seq
681 aa
AA seq
DB search
MNMTRHDELTRLLDQWVECGWLRELDRALVRFLHQECPDAPPLLLLGAALVSYQLGRGHV
CLDLAATLADSGFSLALPPEGDRSDNRKIARPAEVLAGVTLSAWQAALQQPQLVSSGEGS
TPLVLVGARLYLRRYWRYEQDVRRAITQQLTQNDVLRAAIAPAALRQRLDALFPAAAAGP
ANWQKLACALAAGSAFSIITGGPGTGKTTTVVKLLALLQSLALEQHGKPLRIRLAAPTGK
AAARLNESIAGAIAGLTLDGLAQGEVIREHINSEVVTLHRLLGSRPDTRHFRHHADNPLM
LDVLVVDEASMVDLEMMAALLAAMPARSRLILLGDKDQLASVEAGALMGELCQRAAQGHY
LPQTRDWLREVAGDAPDDSLLDPQGSALDQSIAMLRHSYRFGAHSGIGQLAEAVNAGDAA
ALASVWRQGYADLAHLTLTANDNRVLREWVVDGAAGRFGPQPHTVAPVGYGDYLRRMAST
RPALTAPQSEFDVWAAQILDAFGQFQLLCALRNGPWGVDSMNERIAHLLYRDGLLAAWQG
WYPGRPVMVTRNDYSQRLMNGDIGITLQVPLLQPDGSRIWVTRVAFPAGDGSSGIRWVLP
GRLSAVETVFAMTVHKSQGSEFAHTALLLPDSLSPILTRELVYTGITRAKHAFSLGCVGE
HSTVLAEAVGRRVLRVSGLVG
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atgaacatgacccgtcatgacgaattaacccggttgctggaccagtgggttgagtgcggc
tggctgcgggagctggatcgggcgttggtgcgctttctgcatcaggaatgccctgatgcg
ccgcccttattgctgctgggcgcggcgctggtcagctatcagcttgggcgcgggcatgtg
tgcctcgatttggccgccacgcttgccgacagcgggttttcgctggcgctgccgccggaa
ggcgatcgcagtgacaatcggaagattgcgcgcccggcggaggtgctggcgggcgttacc
ctgtcggcctggcaggcggcgttgcaacagccgcaactggtatcgtcgggggaaggcagc
acgccgctggtgttggtcggcgcgcgtctttatctgcgccgctactggcgatacgagcag
gatgtgcgccgcgccatcacgcagcaactgacacaaaacgacgtgctgcgggcggcgata
gcgcctgcggcgttgcgtcagcggctggatgcgctgtttcctgccgccgcggccggcccc
gccaactggcagaaactggcctgcgcgctggcggcgggcagcgcctttagcatcatcacc
ggcgggccgggcaccggaaaaaccaccaccgtggtgaaactgctggcgctgttgcagtcg
ctggcgctggaacagcacggcaagccgttgcgtatccggctggcggcgcccaccggcaag
gcggcggcccgcctgaacgagtcgattgccggggccattgccggcctgacgctggatggg
ctggcgcagggcgaggttattcgggagcatatcaatagcgaggtggtgaccctgcaccgg
ttgctgggcagccggccggatacccggcatttccgccatcacgccgataacccgctgatg
ctggatgtactggtggtggatgaagcgtcgatggtggatctggagatgatggcggcgctg
ctggcggcgatgccggcgcggtcccgcttgattctgctgggcgataaggatcaactggcg
tcggtggaagccggcgcattgatgggcgaactgtgccagcgcgccgcacaagggcactac
ctgccgcagacccgcgactggctacgcgaggtggcgggggacgcgccggacgattcgctg
ctcgacccgcaaggcagcgcgctggatcaatccatcgccatgctgcgtcacagctaccgc
tttggcgctcacagcggcatcggccaactggcggaggcggtgaatgccggcgatgcggcg
gcattggcgtctgtctggcggcaggggtatgccgacctggcgcacctgacgttgacggcg
aatgataaccgcgtgctgcgtgaatgggttgtcgacggcgccgccggtcgattcggacct
cagccccacacggtggcgccggtgggctacggcgactacctgagacggatggcctcgaca
cggccggcgctgacggcgccgcaaagcgagttcgacgtctgggcggcgcagattctggac
gcgttcggtcagttccaactgttgtgtgcgttgcgtaacggaccgtggggcgtcgacagt
atgaatgagcgcatcgcccatctgctgtatcgggacggcttgctggcggcctggcagggc
tggtatccggggcggccggtgatggtgacccgtaacgattatagccagcggctgatgaac
ggcgatattggtattaccctacaggtaccgctgctccagccggacggctctcggatatgg
gttacccgggtggcgtttcccgccggcgatggttcatcgggcattcgctgggtgctgccg
gggcgattatccgcagtggaaacggtgttcgccatgacggtgcacaaatcccaggggtcg
gagttcgctcataccgccttgctgctgccggattccttaagcccaatcctgacccgcgaa
ctggtgtacaccggcattacccgcgccaaacacgcgtttagcctcggctgcgtgggagag
cacagtacggtgctggcggaagcggtcggtcggcgggtattacgggtgagcggactggtg
gggtaa
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