Dipodomys spectabilis (banner-tailed kangaroo rat): 122094921
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Entry
122094921 CDS
T07891
Symbol
Ddx5
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
dsp
Dipodomys spectabilis (banner-tailed kangaroo rat)
Pathway
dsp03040
Spliceosome
dsp05202
Transcriptional misregulation in cancer
dsp05205
Proteoglycans in cancer
Brite
KEGG Orthology (KO) [BR:
dsp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122094921 (Ddx5)
09160 Human Diseases
09161 Cancer: overview
05202 Transcriptional misregulation in cancer
122094921 (Ddx5)
05205 Proteoglycans in cancer
122094921 (Ddx5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dsp03041
]
122094921 (Ddx5)
03009 Ribosome biogenesis [BR:
dsp03009
]
122094921 (Ddx5)
Enzymes [BR:
dsp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122094921 (Ddx5)
Spliceosome [BR:
dsp03041
]
Complex A
U1 snRNP components
U1 related factors
122094921 (Ddx5)
Complex B
122094921 (Ddx5)
Ribosome biogenesis [BR:
dsp03009
]
Eukaryotic type
Pre-60S particles
Helicases
122094921 (Ddx5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
P68HR
ResIII
Helicase_C_2
Cas3-like_C_2
ERCC3_RAD25_C
BNIP2
Motif
Other DBs
NCBI-GeneID:
122094921
NCBI-ProteinID:
XP_042521373
LinkDB
All DBs
Position
Unknown
AA seq
614 aa
AA seq
DB search
MSSYSSDRDRGRDRGFGAPRFGGSRAGPLSGKKFGNPGEKLVKKKWNLDELPKFEKNFYQ
EHPDLARRTAQEVETYRRSKEVTVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAI
QAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELA
QQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLR
RTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHI
NIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVETKRRCDELTRK
MRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPN
SSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQAINPKLLQLVEDRGS
GRSRGRGGMKDDRRDRYSAGKRGGFNTFRDRENYDRGYSSLLKRDFGAKTQNGVYSAANY
TNGSFGSNFVSAGIQTSFRTGNPTGTYQNGYDSTQQYGSNVPNMHNGMNQQAYAYPATAA
APMIGYPMPTGYSQ
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atgtcgagttattcgagtgaccgggaccgcggccgggatcgagggtttggtgcacctcga
tttggagggagtagggcaggacccctatctggaaagaagtttggaaatcctggggagaaa
ctagttaaaaagaagtggaaccttgatgagctccccaaatttgagaagaatttttatcaa
gaacatcctgatttggctaggcgcacagcacaagaggtagagacatacagaagaagcaag
gaagttacagtgagaggtcataactgtccaaaaccagttctgaatttctatgaagcaaat
ttccctgcaaatgtcatggatgtgattgcaaggcagaactttactgaacccactgctatt
caagctcagggatggccagttgctcttagtggattggacatggttggagtagcacagact
ggatctgggaagacgttgtcttatttgctgcctgccatcgttcacatcaatcatcagcca
ttcctagaaagaggtgatgggcctatttgtttggtgctggcaccaactcgagaactggcc
cagcaggtgcaacaagtagctgctgaatactgtagagcttgtcgtttaaagtctacttgc
atctatggtggtgctcccaagggaccacaaatacgtgatttggagagaggtgtggaaatc
tgtattgcaacacctggaagactgattgactttttagagtgtgggaaaaccaatctgaga
agaacaacttaccttgtccttgatgaagcagatagaatgcttgatatgggttttgaaccc
caaataaggaagattgtggatcagataagacctgatagacaaaccctaatgtggagtgcg
acttggccaaaagaagtaagacagcttgctgaagatttcctgaaagactacattcatata
aacattggtgcactagaactgagtgcaaatcacaacattcttcagattgtggatgtatgt
catgatgtagagaaggatgaaaaacttattcgtctaatggaagagatcatgagcgagaag
gagaataaaaccattgtttttgttgaaaccaaaagaagatgtgatgagcttaccagaaag
atgaggagagatgggtggcctgccatgggtatccatggtgacaaaagtcaacaggagcgt
gactgggttctaaatgaattcaaacatggaaaagctcctattctgattgctacagatgtg
gcctccagagggctagatgtggaagatgtgaaatttgtcatcaattatgactaccctaac
tcctcagaggattatattcatcgaattggaagaactgctcgcagtaccaaaacaggcaca
gcatacactttctttacacctaataacataaagcaagtgagcgaccttatctctgtgctt
cgtgaagctaatcaagcaattaatcccaagttgcttcagttggtcgaagacagaggttca
ggtcgttccaggggtagaggaggcatgaaggatgaccgccgggacagatactctgcgggc
aaaaggggtggatttaatacctttagagacagggaaaattatgacagaggttactctagt
ctgcttaagagagattttggggcaaaaactcagaatggtgtttacagtgctgcaaattac
accaatgggagctttggaagtaattttgtgtctgctggtatacagaccagttttaggact
ggtaatccaacagggacttaccagaatggttatgatagcactcagcaatacggaagtaat
gttccaaacatgcacaatggtatgaaccaacaggcatatgcgtatcctgctactgcggct
gcgcccatgattggctatccaatgccaacaggatattctcaataa
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integrated database retrieval system
