Dipodomys spectabilis (banner-tailed kangaroo rat): 122096307
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Entry
122096307 CDS
T07891
Name
(RefSeq) helicase SRCAP isoform X1
KO
K11661
helicase SRCAP/SWR1 [EC:5.6.2.-]
Organism
dsp
Dipodomys spectabilis (banner-tailed kangaroo rat)
Pathway
dsp03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
dsp00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
122096307
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
dsp03036
]
122096307
Chromosome and associated proteins [BR:
dsp03036
]
Eukaryotic type
Chromatin remodeling factors
SRCAP complex
122096307
SWR1 complex
122096307
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
HSA
ResIII
DEAD
HDA2-3
Motif
Other DBs
NCBI-GeneID:
122096307
NCBI-ProteinID:
XP_042522789
LinkDB
All DBs
Position
Unknown
AA seq
3216 aa
AA seq
DB search
MQSSPSPAHPQLPILQTQMVSDGMTGSNPVSPASSSSPASSGAGGISPQHIAQDSSLDGP
SGSSDGATVPLEGLSLPQAADLANKGPKWEKSHAEIAEQAKHEAEIETRIAELRKEGFWS
LKRLPKVPEPPRPKGHWDYLCEEMQWLSADFAQERRWKRGVARKVVRMVIRHHEEQRQKE
ERARREEQAKLRRIASTMAKDVRQFWSNVEKVVQFKQQSRLEEKRKKALDLHLDFIVGQT
EKYSDLLSQSLNQPLASSKAGSSPCLGSSSAASSPPPPASRLDDEDGDFQPQEEEEEDDE
ETIEVEEQQEGNDAETQRREIELLRREGELPLEELLRSLPPQLLEEPSSPSQTPSSHDSD
TRDGPEECVEEDPSQVKPSPSVTQCNKQPWHPEEDDEEFTANEDEAEDEEDTIAAEEQLE
GEVDHAMELSELAREGELSMEELLQQYAGAYASDASAPGSGSSDEDEEDEDEEVDTNSSD
CEPEEATETEEAAQEDQEDSSSQSDSDEEQSEDEEDEHSEEEETSRSSESEESESDESED
AQSQSQVDEEEEEDDDFGVEYLLARDEEQSEADGGSGPPTPGPTTTLGPKKEITDIAAAA
ESLQPKGYTLATTQVKTPIPLLLRGQLREYQHIGLDWLVTMYEKKLNGILADEMGLGKTI
QTISLLAHLAYEKGNWGPHLIIVPTSVMLNWEMELKRWCPSFKILTYYGAQKERKLKRQG
WTKPNAFHVCITSYKLVLQDHQAFRRKNWRYLILDEAQNIKNFKSQRWQSLLNFNSQRRL
LLTGTPLQNSLMELWSLMHFLMPHVFQSHREFKEWFSNPLTGMIEGSQEYNEGLVKRLHK
VLRPFLLRRVKVDVEKQMPKKYEHVIRCRLSKRQRCLYDDFMAQTTTKETLATGHFMSVI
NILMQLRKVCNHPNLFDPRPVTSPFITPGICFSTASLVLRATDVHPLERIDMDRFDLIGL
EGRVSRYESDTFLPRHRLSRRVLLEVATAPDPPPRPKPVKMKVNRMLQPVPKQEGRTVVV
VNSPRTPLGPVPLRPPPVPELSTQNTPSLTPPVLPAPLMVSASPAASSLVPASRPPGPVL
LPPLQPNSGSLPQVLPSPLGVSSGTSQPPTPTLSLKPTPPAPVRLSPAPPPGSSSLLKPL
TVPPGYTFSPVAATTTSITTATTTTTAVPAPTPAPQRLILSPEMQARLPSGEVVSIGQLA
SLAQRPVASAGGSKPLTFQIQGNKLTLTGAQVRQLAVGQPRPLQRNVVHLVSAGGQHHLI
SQPAHVALIQAVAPTPGPTPVSVLPSSTPSTTPAPTGLSLPLAANQVPSSMVNSTGVVKI
VVRQAPRDGLTPVPPLAPAPRPPGSGLPAMLTPRPTLSPGRLPTPTLGTARAPIPTPTLV
RPLLKLVHSPSPEITASAPGAAPMTISSSLHVPSSLPGPASSPIPMPNSSPLPSPVSSTV
SVPVSSSLPIPVPTTLPAQTSVPLTIPISTPLPVSASGSALLTSATPALAPIVSAASGPP
PLASAGPSPSMSALTLGLAAAPALSPPQTAGHPLLLAPTSSHVSGLNSPVAPACSPVLVP
ASALASTFPSAPNPAPASLLAPAPSASQTLANSMAPMTASQTAVLGPSPAPLTPLPVLAP
SPGSAPVLASPQTPLPVMAPSSVPGTPLASSSLVSAPTPVLAPASTQTMVPNPVPSPLSS
LASTQQTLALAPTLASTFSGSSPSQTHSLGTGNPQGPFPAQTLSLTPVSSLVPPAAQTLS
LAPGAPLGPTQTLSLTPAPPLAPASPMGLAPAHTLTLAPASSSASLLAPASVQTLTLSPT
SVPVPTLGTAAAQTLALAPASQASSLVGAASLPVTMANRLPVAKDEPETLMFRSGPPSPP
STATSFSGPRPRRQPPPPPRSPFYLDSLEEKRKRQRSERLERIFRLSEAHGALAPIYGTE
VLDFCTLPQPVASPIGPRSPGPSHPTFWTYTEAAHQAVLFPQQRLDQLSEIIERFIFVMP
PVEAPPPSLHACHPPPWLAPRQAAFQEQLACELWPRARPLHRIVCNMRTQFPDLRLIQYD
CGKLQTLAVLLRQLKAEGHRVLIFTQMTRMLDVLEQFLTYHGHLYLRLDGSTRVEQRQAL
MERFNADKRIFCFILSTRSGGVGVNLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDV
HIYRLISERTVEENILKKANQKRMLGDMAIEGGNFTTAYFKQQTIRELFDMPLEESSGSS
VPSALEEEEETMASKQTHILEQALCRAEDEEDIRAATQAKAEQVAELAEFNENDGFPAGE
GEEASRPGVEDEEMSRAEQEIAALVEQLTPIERYAMKFLEASLEEVSREELKQAEEQVEA
ARKDLDQAKEEVFRLPQEQEEGPGAGDEMSCGIGGGSHRRSKKVKAPERPGTRVSERLRG
ARAENQGANHTPVTSTHHTRSTSTPSRCSPARERAPRPVPKPRPTPTLVPATIPAPVPAP
IPISASNPLTVPIHISPSSPPPPKIPPSCSSPACTPPPTCTPPPPHTPPPVQPSPLSPSS
LVQLDLPSLPDSPPVTNPPLSLRPEPELGTQALASVETLEMAGVTNSGSSPLTLVPPKDL
LPVAVEILPVSEKNLPVIPSTPSPTLEAGSIPNGQEQEVSDPAEGPILTVLPGREELPTS
RSESNGLELPPSAASDEPLQEPLEPDRNLEELVEVQTLTSSPEKPQELVTAEVTAPSTSS
SVTSSPEDPSPARPPRRRTSADVEIRGQGTGQPGQPPGPKVLRKLPGRLVTVVEEKELVR
RRRHRAAVSTLVPGVSETSTSPGSPSTRSMSGPESSPPAGGLCETAPTSSLPTPTQPPFI
ARRRIELGVTGGGSPENGERALLTITPPAVKRRRGRPPKKNRSPADAGRGVDEAPSSSST
SKGKTNGADPGPGAETLIVAEPVLGPDPFHKPEPIILSPVEKRRRGRPPKARELPIPGTI
SSPGDVNLESRTQPLPLPSSLPPLPPLLAYPTATVTNTVTTVTISTSPPKRKRGRPPKNP
SSPRPSQLPVLDRDSSSVLESCGLGRRQQPLGQGESEGSSSDEDGSRPLTRLARLRLEAE
GVRGRKSEGSMVVAVIQDDLDLADSGPGGLELAPPVVSLTPKLRSTRLRPGSLVPPLETE
KVPRKRSGAPLGGSPGLTKRGRLQPPSPLGPEGSVEESEAEASGEEEDGDETSRRRPGPR
RLAGTTNQGDQRILRSNAPPHLSGPTISHRGRKAKT
NT seq
9651 nt
NT seq
+upstream
nt +downstream
nt
atgcagagcagcccctcccctgctcatcctcagctcccaattctacagacacagatggtg
tcggacggcatgacaggcagcaatcctgtgtcccctgcctcatctagttccccagcctct
agtggggcaggtggcatctccccccagcacatagctcaagattcttctttggatggacct
tcaggctcctcagatggtgccacagtgcccctggaagggctcagcttaccccaggctgct
gacttggctaataagggcccaaagtgggaaaagagccatgcagaaattgcagagcaagcc
aagcatgaagctgaaattgaaactcggattgctgagcttcggaaggagggattctggtca
ctgaagaggctacctaaggtgccagagcctccacggccaaaaggccactgggattatctg
tgtgaggagatgcagtggctctctgctgactttgctcaggagcgccgatggaaacggggt
gtggctcgtaaggtggtacgcatggtgatcaggcatcacgaggaacagcggcagaaagaa
gaacgggctcggagggaggagcaggccaagcttcgaagaattgcttccaccatggccaag
gatgtccggcagttctggagcaatgttgagaaggttgttcaattcaagcagcagtcccgg
cttgaagaaaagcgcaaaaaagctttggacttgcacctagacttcattgtgggacaaact
gaaaagtactctgatctactgtctcagagcctcaaccagccactagcttccagcaaagct
ggttcctccccttgccttggttcttcctcagctgcctctagtcctccgccccctgcttcc
cggctggatgatgaagatggggacttccaaccccaagaggaggaggaagaggatgatgag
gagactattgaggttgaagaacagcaggaaggcaatgatgcagagacacagagacgtgag
attgagctgcttcgacgtgagggagaactgccattggaagagctgcttcgttccctccca
cctcagctgctggaagagccttccagtccctctcaaaccccctcatctcatgatagtgat
acccgagatggacctgaagaatgtgttgaagaggatccctctcaggtaaagccctcacct
tcagtcacacagtgcaacaaacagccttggcatccagaggaagatgatgaagagtttact
gccaatgaggatgaagcggaagatgaagaggataccatagcagctgaggagcagttggaa
ggggaggtggatcatgccatggaactgagcgaattggctcgagaaggtgagctatctatg
gaagagctactacaacagtatgcaggagcctatgcttctgatgcctctgctccaggctct
gggagtagcgatgaggatgaggaagatgaagatgaagaggttgacactaacagttctgac
tgtgaaccagaggaggcgacagaaactgaagaggcagctcaagaggatcaagaggatagt
agcagtcagtcagactctgatgaggagcagagtgaggatgaagaagatgagcattcagag
gaggaagaaacgagcagaagttccgaatcagaagaatctgagtctgatgagtctgaagat
gcccagtcacagagccaagtagatgaagaagaggaggaagatgatgattttggggtggag
tacttgcttgcccgggatgaagagcaaagtgaggcagatggaggtagtgggcctcccact
ccagggcctaccactactctaggccctaagaaagaaattactgacatcgctgcagcagct
gaaagtctccagcccaagggttataccttggccactacccaggtgaaaactcccatcccc
ctattactacggggccagctccgggaataccaacacattggactcgactggctagtgact
atgtatgagaagaaactcaatggcattcttgctgatgagatggggctggggaagacaatc
cagaccatctccttgcttgcgcacttggcctatgagaaaggtaactggggtccccattta
atcattgttcccaccagtgtgatgttgaactgggagatggagctgaaacgttggtgcccc
agctttaaaatcctcacttactatggagcccaaaaagagaggaagctcaagcggcagggc
tggaccaagcccaatgccttccatgtgtgtattacatcttacaagctggtgctgcaggac
caccaggccttccgccgcaagaactggcgatatctcattctggacgaagctcagaacata
aagaacttcaagtcccagcgctggcagtctctgctcaacttcaacagccagagacgtcta
ctcctgacaggaactcccttgcagaatagcctcatggaactgtggtctttgatgcacttt
ttgatgccccatgtcttccagtctcatcgagagttcaaggaatggttctctaaccctcta
actggcatgattgaaggcagccaagagtataatgaaggtctagtcaaacgcttgcataag
gttttgaggccttttttgctgcgccgcgttaaagtggacgttgagaaacagatgcccaaa
aagtatgagcatgttatccgctgccgactctccaagcgccaacgatgtctctatgatgac
ttcatggcacagaccacaactaaggagacactagccacaggccatttcatgagcgttatc
aacattttgatgcagctgcgaaaagtctgcaaccatccaaatctttttgatcctcgacct
gttacctctcccttcattaccccaggcatctgtttcagcaccgcctctttggtgctaagg
gccactgatgtccatccactcgagcggatagacatggaccggtttgaccttattggcctg
gagggtcgtgtctcccggtatgagtctgatacgtttctgcctcggcatcgcctctcccgc
cgggtactgctagaggtagctactgctcctgaccccccgcctcggcccaagccagtcaag
atgaaagtcaacaggatgctacagccggtgcctaagcaagaaggtcgcacagtggtggtc
gtgaatagcccacggacgccccttggccctgtcccactcagacctcctccagtccctgag
ctctcaacccaaaatactcctagcctaacgcctccagtgttgccagcgccattgatggtg
tctgcctcacctgctgcatcctcacttgttcctgcatcccggccccctggacctgttctt
ttgcctcctctgcagcctaacagtggttctctcccccaggtgttgccatctcccctgggg
gtttcgagtggcacttcacagcctcccacaccaaccctgtccctgaagccaactccacct
gccccagttcgtttgagtccagccccacccccaggctcctctagcctactgaaacccctc
acagtacctccaggctataccttctctcctgttgctgctactaccacctctatcaccaca
gcgaccactaccaccacagcagtgccagctccaactcctgcaccacagcgtctcatcctg
tctcctgaaatgcaggctcgcctgccatccggtgaagtggtcagcattgggcagttggcc
tctttggcacaacgtccagtggctagtgccgggggaagcaaacctctcaccttccaaatc
cagggcaacaaactgactttgactggtgcccaggtgcgccagcttgctgtggggcagccc
cgcccgctgcaaaggaatgtggtgcacctggtgtcagcaggggggcagcaccacctcatc
agccagcctgcccatgtggccctcatccaggccgtcgccccgacccctggccccacccct
gtctctgtgctgccttcttcgacccccagcaccacccctgcccctactggcctcagcctt
ccgcttgctgctaaccaggtgccatcatccatggtgaatagtacaggcgtggtgaagatt
gtagtgagacaggcccctcgggatggactgactcctgttccaccgttggcaccagcacct
cgacctccgggttctgggcttccagctatgttgactccacgccccacattaagtcctggc
aggttacccacacctactctgggtactgctcgggcccccatacctacacccactctggtg
aggccccttctcaagctggtccacagtccttcacctgaaatcactgcttcagcgcccgga
gctgctcccatgactatatcctcttctcttcatgtgccatcctcacttcccgggccagcc
tcgtcaccaataccaatgcctaattcctctccccttcctagtcctgtgtcgtctacagtg
tcagtccccgtatcatcttcccttcccattcctgtccctaccacacttcctgcccaaact
tctgttcccctgaccatccccatttcaacccccttgcctgtttcagcatcaggctcagct
ctgttgaccagtgcaactccagcactggcacccattgtctcagcggcttctgggccacct
ccattggcatcagctgggccttccccatccatgtcagccttgactctaggtttggccgca
gctccagccctgtccccaccacagacagctggtcatcctctcttgttggctcccacttct
tcacatgtttcagggttgaactcacctgtggccccagcatgctcacctgtactggtgcca
gcttctgctctagccagtactttcccatcagcgccaaatccagctccagcttcccttctg
gctccagcaccttctgcatctcagactttagccaactctatggctcctatgacggcttca
cagacagcagtcctgggtccttctccagctcctctgactcctcttcctgtcctggctcca
tcgccaggctctgctcctgtcctggcttcaccgcagactccacttccagttatggctccg
tcatcagtgccaggaacccctttagcctcatcttcattggtgtcagctccaactcctgtg
ttggctccagcatcaactcagactatggtaccaaatccagttccatcgcctctctcaagc
ctggcttctacgcagcagacactggccctagccccaaccttagcatccactttcagcggc
tcgtctccatctcagacacactctttggggacagggaaccctcagggcccctttccagct
cagacgttgtcattgactccagtttcatccctggtaccacctgcagcccagacactgtct
ttggcaccaggagcaccactgggtccaacacagacactgtctctgactccagcacctcct
ctggctccagcttctcctatgggactggccccagctcacacactgactttggctccagca
tcgtcatctgcttcactcctggccccagcttcagtgcaaacactgaccttgagccccacc
tctgttcctgtgcccaccctgggaacagctgcagctcagaccctggcactggccccagct
tcccaggcatcttcccttgtgggtgcagcttctttgcctgtcaccatggcaaaccggctg
cctgttgccaaggatgagcctgagacactgatgtttcgctctggtccccccagccctccc
tccactgctacctcgttcagtggcccccggcctcgacggcagcccccaccaccacctcgt
tcccctttctatctggattctctggaggaaaagcggaagcgacaacggtccgaacgcctg
gaacggattttccgacttagtgaggctcatggggccctggctcctatatatgggactgaa
gtcctggatttttgtaccctgccccaacctgttgccagccccatcggccctcgttctcct
ggccccagccaccccaccttttggacttatactgaggctgcccaccaggctgttctgttt
ccccagcagcgactagaccagctatcagaaatcattgagaggttcatctttgtcatgcct
cctgtggaggcacctcccccttccctgcatgcctgccacccacctccttggctggccccc
cgccaggcagccttccaggagcaattggcctgtgagctttggccccgggctcgtcctttg
caccgtattgtgtgtaacatgcgcacccagttccctgacttgagactcatccagtatgac
tgcggaaagttgcagacattggcagtgctgttgagacagctcaaggcagagggccaccgg
gtgctcatcttcacacagatgacccgaatgctggatgtattagagcagtttctcacttac
catggtcacctctacttacgtctggatgggtctactagggttgaacagagacaggccttg
atggaacggttcaatgcagacaaacgaatattctgcttcatcctttcaactcgaagtggg
ggtgtaggcgtgaacctgacaggagcagacactgttgttttttatgacagtgactggaat
cccacaatggatgctcaggcccaagatcgttgtcaccgaattggtcagactagagatgta
cacatctataggcttattagtgagcggacagtggaggagaacatcctaaaaaaggcaaat
cagaagagaatgttaggagacatggccattgagggaggcaacttcaccacagcctatttt
aaacagcagaccatccgagagctgtttgatatgcctctggaggaatcatctggctcatct
gtaccctcggcccttgaggaagaggaggagactatggctagcaaacagacccatattcta
gagcaggccttgtgccgggcagaggatgaagaggatattcgtgcggctacccaggccaag
gctgaacaagtggctgaacttgcagaatttaatgagaatgatgggtttcctgctggtgag
ggagaagaggccagtcgccctggggtggaggatgaggagatgtcccgtgctgagcaggag
attgctgcccttgtagaacagctgactcccattgagcgctatgccatgaaattcctggaa
gcctcattggaggaagtgagccgagaggagctcaagcaggcggaagaacaagtggaagct
gcccgcaaagaccttgatcaagccaaggaagaggtgttccgcctacctcaagaacaggag
gaagggccaggggctggggatgagatgtcctgtgggattggtggaggcagccaccggcgc
agtaagaaagtcaaggctcctgagaggccggggactcgtgtcagtgagcgtcttcgtgga
gcccgggctgagaatcaaggggcaaaccacactcctgtcacgtctacccatcatacccgt
agtacctccacaccctcacgttgcagccctgccagggagcgagctcccaggccagtgcct
aaaccacgacctactccaactttagttcctgctacaattcctgccccagtccctgcccca
attcccatttcagcctcaaatccactaactgttcctatccatatctcaccttcttcccca
cctcctccaaagattcctccctcttgttcttctcctgcctgtacccctcctcctacctgt
acccctccaccacctcataccccaccaccagtccaaccctctcccctaagtccttcctct
cttgtccagctcgatttgccttctcttcctgactctcccccagtcacgaatccccctttg
agcttgaggcctgagccagaactgggtacacaagctttggcatctgtggagaccttggag
atggctggtgtgaccaattctgggagttccccgcttactcttgtacccccgaaggatctg
ctgccagttgctgttgagatcctacctgtgtcagagaagaaccttcctgtcattccttct
acaccaagtccaaccctggaggctggcagcatccccaatggtcaagagcaggaagtctca
gatcctgctgagggacccatcctcacagtactgcctggcagggaggaattgcccaccagt
cggagtgagagcaatgggctggagctcccaccttcagcagcatctgatgagccacttcag
gagccactggaacctgacaggaacttggaagagctggtagaagttcagaccctaacctcc
agcccagagaagccacaggaacttgttacagctgaagtcacagctccatccacctcttct
tcagtcacctcctctcctgaggatccttcacctgcccggccccctcggcgtcgcaccagt
gctgatgtggaaattaggggtcaggggactggccagccagggcaacctccaggccccaaa
gtgcttcgcaagctgccaggacggcttgtaacagtagtagaggagaaagaacttgtgagg
cgacggcgacaccgggcagctgtcagcactctagtacctggggtctctgagacaagcacc
agcccaggaagcccatcaacccgcagcatgtcagggccagaatcctcacctcccgctggc
gggctctgtgaaactgctcccacatcctcactgcccaccccaacccaaccacccttcata
gctcgtcgtcgaattgagctgggggtgactggtgggggcagcccagagaatggagaaagg
gcactgctcaccatcactccccctgctgtgaaacgacggagggggaggcccccaaagaag
aacaggtcgccagcagatgctggcagaggggtggatgaggctccttcatcttcatctaca
tcaaagggaaaaaccaacggggctgatccaggccctggagctgaaacgctcattgtagcc
gagcctgtcctagggcccgatccctttcacaaaccagagcccatcattctgtcacctgtg
gagaaaagaaggcgggggcgtccccctaaagcaagggaattgcccatccctgggaccatt
tcctctccaggagatgtcaatttagagagccggacacagccactcccactaccatcatcc
ctgccaccactcccaccactgctagcctatcccactgctactgtcaccaacactgtcacc
actgttaccatttcaacatccccacccaaacggaagcgaggccggcctcctaagaatcca
tcatcgcctcggcccagccagctccctgtcttggaccgtgacagctcttctgtccttgag
agttgtggattgggaaggcggcagcaacccctgggccaaggagagagtgagggtagttcc
tctgacgaggatggaagccgtcccctcactcgcctggcccgcctgcggcttgaagcagaa
ggggtgcgaggacggaagagtgaagggtccatggtggtggctgtaattcaggatgacctg
gatctagcggatagcgggccaggcgggttagaactggcacctcctgtggtctcattaacc
cccaaattgcgttcgacccggctgcgtccagggtctctagtccccccactagagactgaa
aaggtgcctcgcaaacggtcaggggctccccttggtgggagtcctgggctaacaaagcgg
ggtcgtctgcagcccccaagtcccctggggcctgagggttcagtagaggagtctgaggct
gaagcctcaggtgaggaagaagacggggatgagacctcacgccgcaggcccggcccccgc
aggcttgctgggaccaccaaccaaggggaccagcgcatcctacgcagcaatgctcctccc
cacctgtctggccctaccattagtcacagaggccgaaaggccaagacgtga
DBGET
integrated database retrieval system
