Dipodomys spectabilis (banner-tailed kangaroo rat): 122097378
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Entry
122097378 CDS
T07891
Symbol
Cic
Name
(RefSeq) protein capicua homolog isoform X1
KO
K20225
capicua transcriptional repressor
Organism
dsp
Dipodomys spectabilis (banner-tailed kangaroo rat)
Pathway
dsp05017
Spinocerebellar ataxia
Brite
KEGG Orthology (KO) [BR:
dsp00001
]
09160 Human Diseases
09164 Neurodegenerative disease
05017 Spinocerebellar ataxia
122097378 (Cic)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
dsp03000
]
122097378 (Cic)
Transcription factors [BR:
dsp03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
122097378 (Cic)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF4819
HMG_box
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
122097378
NCBI-ProteinID:
XP_042523755
LinkDB
All DBs
Position
Unknown
AA seq
2519 aa
AA seq
DB search
MKPMKKACTSLSGPGSGSKSPPATRAKALRRRGAGESDKPEEDEEETQPQQQPGPEEAEE
GEEEEAAERGSGAEGPPPELHPSDPASGPAEDPKGDGEAGRWEPSLSRKTATFKSRAPKK
KYVEEHSAAGGGVTGAPEEQQERTPEEASALGVPPQPPASARSSSTDTASEHSADLEEES
AEACGPGPWPPGGPSGGYDLRQLRSQRVLARRGDGLFLPAVVRQVRRSQDLGVQFPGDRA
LTFYEGLPGSGVDVVLDATPPPGALVVGTAVCTCVEPGVAAYREGVVVEVATKPAAYKVR
LSPGPGSQAGPPGSLPQPQPPLHNREPEEAVWVARSSLRLLRPPWEPEVLLRKPPIGPEE
EQAEPGTTLPPCPAPLDPKQPEDAEVSKISFGGTLGVHCEEGEEKHPPALGTPALLPLPP
PQLLSPPPKSPAFAGPGRPGEQPSPCQEGSQGGSRSSSVASLEKGAAPAARARTPLTAAQ
QKYKKGDVVCTPNGIRKKFNGKQWRRLCSRDGCMKESQRRGYCSRHLSMRTKEMEGLADG
GPGGAGRPAGVAAREGSTEFDWGDETSRDSEASSVAARGDSRPRLVAPADLSRFEFDECE
AAVMLVSLGSSRSGTPSFSPVSTQSPFSPAPSPSPSPLFGFRPANFSPINASPVIQRTAV
RSRHLSASTPKAGVLTPPDLGPHPPPPAPRERHSSGILPTFQTNLTFTVPISPGRRKTEL
LPHPGALGAPGAGGGGAAPDFPKSDSLDSGVDSVSHTPTPSTPAGFRAVSPAVPFSRSRQ
PSPLLLLPPPAGLTSDPGPSVRRVPAVQRDSPVIVRNPDVPLPSKFSGEVGTAGEVRAGG
PGRGCRETPVPPGVASGKPGLPPPLPAPVPITVPPAAPTAVAQPMPTFGLASSPFQPVAF
HPSPAALLPVLVPSSYTSHPAPKKEVIMGRPGTVWTNVEPRSVAVFPWHSLVPFLAPSQP
DPSVQPSEAQQPASHPVASNQSKEPAESAAVAHEQPPGGTGNADPGRPPGATCPESPGPG
PPHTLGMVEPGKGPLPTTEEETPGPPGEPRLDSETESDHDDAFLSIMSPEIQLPLPPGKR
RTQSLSALPKERDSSSEKDGRSPNKREKDHIRRPMNAFMIFSKRHRALVHQRHPNQDNRT
VSKILGEWWYALGPKEKQKYHDLAFQVKEAHFKAHPDWKWCNKDRKKSSSEAKPASLGLA
GGHKETRERSMSETGTAAAPGVSSELLSVAAQTLLSSDSKAAGSGPCGAERLHAVGGPGS
ARPRAFSHSGVHSLDGGEVDSQALQELTQMVSGPTSYSGPKPSTQYGTPGPFAAPGEGGA
LAASGRPPLLPTRASRSQRAASEDMTSDEERMVICEEEGDDDVIADDGFGTTDIDLKCKE
RVTDSESGDSSGEDPEGNKGFGRKLFSPVIRSSFTHCRPTLDPEPPGPPDPPAAFGKGYG
PTSSSSSSPATTSTSVANSFSLGSGSFKAQESGQGSTTGPLRPPPPGPGGPATPSKATRF
LPSDPASFRRKRPESVGSLEPSGPSVIAVPPSGGGTILQTLVLPQNKEDREGSGARVPSA
SAPSLSYGASAAPLSRPAATMVTNVVRPVSSTPVPIASKPFPSSGRTEASPNDTAGARTE
MSTGSRVPGGSPLGVSLVYSDKKSAAATSPAPHLVAGPLLGTVGKAPATVTNLLVGTPGY
GAPAPPAVQFIAQGAPGGGPTAGSGAGAGSGPNGPVPLGILQPGALGKAGGITQVQYILP
TLPQQLQVAPAPGPPAPGAKAAAPTGPAPTTSIRFTLPPGTSTNGKVLAATAPTPGIPIL
QSVPSAPPPKAQSVSPVQAPPPGGSAQLLPGKVLVPLAAPSMSVRGGGPGQPLPLVSPPF
SVPVQNGAQPPSKIIQLTPVPVSTPGGLVPPLSPASLPGPTSQPQKVLLPSSTRITYVQS
AGGHTLPLGTSPASSQAGTVTSYGPTSSVALGFTSLGPSGPAFVQPLLSAGQAPLLAPGQ
VGVSPVPSPQLPPACTAPGGPVITAFYPGSPASTSAPLAQPAQAPPSLVYTVATSTTPPA
ATILPKGPPAPATATPAPTSPFPSATAGSMTYSLVAPKAQRPSPKAPQKVKAAIASIPVG
SFEAGASGRSGPAPRQPLEPGPTREPTAPESELEGQPTPPAPPPPPETWPPGARSSPPLP
LPAEERPGTKGPETMPSKFSSSSSDWRVPGLGLESREPPTPPSPAPAPAPGSSSGGSLEG
SGGRGAGDTPERKEVAGAGKKVKVRPPPLKKTFDSVDNRVLSEVDFEERFAELPEFRPEE
VLPSPTLQSLATSPRAILGSYRKKRKNSTDLDSAPEDPTSPKRKMRRRSSCSSEPNTPKS
AKCEGDIFTFDRTGTEAEDVLGELEYEKVPYSSLRRTLDQRRALVMQLFQDHGFFPSAQA
TAAFQARYADIFPSKVCLQLKIREVRQKIMQAATPTEQPPGAEAPLPGPPPAGTAATPAP
TPSPAGGPDPTSPGPDSGTAQAAPPLPPPPEPGPGQPGWEGPPQPSPPPSGPSTTATGR
NT seq
7560 nt
NT seq
+upstream
nt +downstream
nt
atgaagccgatgaagaaggcatgcactagtctttcaggtcctggtagtggcagcaagtcc
ccaccagccaccagggccaaggccctaaggcggcgaggggctggggagagtgacaagcca
gaggaggacgaggaggagactcagccacagcagcagcctgggccagaagaggctgaagag
ggcgaggaggaggaggccgctgagcggggttctggggctgaggggccgcccccagaacta
caccccagtgacccagcctcaggcccagccgaggaccccaaaggggatggggaggcaggc
cgctgggagccctcactcagccgcaagacagccacgttcaagtctcgagcccctaagaag
aagtacgtggaggagcacagtgctgctggtgggggggtgacgggggctcctgaagagcag
caagagcggacccctgaggaggccagtgccctgggggtacccccccagccacctgcttcc
gcccgctcctcttccactgacacagccagcgagcactcggccgacctggaggaggagtct
gcagaggcctgtggtccagggccctggcctccgggtggccccagtggtggctatgacctg
cggcagctgcggtcccagcgggtgctggcacgacgtggtgatggcctcttcctgccggca
gtggtgcgccaggtgcgccgaagccaggacctaggtgtgcagttccctggagatcgagcc
ttgactttttacgaggggcttccgggcagtggcgtagatgtggttttggatgccacgccg
ccaccaggtgcgctggtggtgggcacagccgtctgtacctgtgtggaacctggggtggca
gcctaccgtgagggtgtggtggtggaagtggccacgaagccagccgcctacaaggtccgc
ctcagccctggccctggctcccaggcaggcccaccgggctccctgccacaaccccaacca
ccgctccacaaccgggagcccgaagaagccgtgtgggtggcccgctccagcctgcgcctg
ctgcggcccccctgggaacccgaggtcctgctgaggaagccccccattgggcctgaagaa
gagcaagccgagccgggaaccaccctgccgccctgcccagctcccctggaccccaagcag
cctgaggatgctgaggtctccaagattagcttcggtggtaccctgggcgtccactgtgag
gagggtgaggagaagcacccaccagccctgggcaccccagccctgctcccgctaccccca
ccccagctcctgtccccaccccccaagtccccagccttcgctggccctggtcgccctggg
gagcagccttcgccctgccaggaagggagccagggtggcagccggagcagcagcgtggcc
tcgctggagaagggggccgccccagcagcccgggcccgcaccccactgacggctgcccag
cagaaatacaagaagggtgacgtggtctgcacacccaatggcatccgcaagaagttcaac
ggcaagcaatggcggcggctctgctctcgtgatggctgcatgaaggagtcacagcggcga
ggctactgctcccgccacctgtccatgcgaaccaaggagatggagggcctggcagacggc
gggcccggtggggctgggcggccggctggtgtggcagcccgggagggcagcaccgagttt
gactggggggacgagacatcaagggacagcgaggccagcagtgtggctgcccggggtgac
tcgcgcccgcgcctggtggcccccgcggatctgtcacgcttcgagtttgatgagtgtgag
gcagccgtgatgctggtgtcgctgggcagctcccgttcgggcacgccctccttctccccc
gtctccacgcagtcgcccttctcgccagccccctcgccctcaccttcgcccctctttggc
ttccgccctgccaacttcagccccatcaacgcctcgcccgtcatccagcgcacagcggtt
cgcagccgccacctgagtgcaagcaccccaaaggctggcgtgctgacgccccccgacctg
ggcccccacccgccgccacctgccccccgagaacgtcattcctccggcatccttcccact
ttccagaccaacctaacctttaccgtgcccatcagccctgggcggcgcaagaccgagctg
ctgccccacccaggggcattgggggcccctggagcaggaggtgggggtgctgccccagac
ttccctaaaagtgacagcttagactctggtgtggactcagtgtcccacacgccgaccccc
tccacgccggctggcttccgggctgtgtcacctgccgtgcccttctcacgctcccgccag
ccttcacccttgctgctgctgcccccgcctgccggcctgacctcggatccagggccctcc
gtgcgcagggtgcccgcagtgcagcgggactcgcccgtcatcgttcgcaaccctgatgta
ccactaccctccaagttctctggagaggtgggcacggccggtgaggtccgggctggggga
cctgggcggggctgccgggagactcccgtgccccctggggtggccagtggaaagcctggc
ctgcccccacctctgccggctcctgtgcccatcactgtgcctccagccgcgcccaccgct
gtggcccagccgatgcccacctttgggctggcttcatcacccttccagcctgtggccttc
catccctcacccgctgccctgttgccggtccttgtgccaagcagctataccagccatcct
gcccccaagaaggaagtcatcatgggccggcctggaacagtgtggacaaacgtggaacct
cgctctgtggccgtgttcccctggcactccttagtccccttcctggcacccagccagccg
gacccctctgtgcagcccagtgaggcccaacaacctgccagccacccagtggcctccaac
cagagcaaagaacctgctgagtcagcagctgttgctcatgagcagccaccaggaggcaca
ggaaatgctgaccctgggcggccccctggggccacatgccctgagagcccagggcctgga
cccccacacacattggggatggtggaacctggtaaaggtccccttcctactactgaggag
gagacccctggccccccgggagaaccccgtctggacagtgaaacagagagcgaccatgat
gatgccttcctgtccatcatgtctcccgagatccagttgcctctgccacctggaaaacgg
cggacccagtccttgagtgctctgcctaaggaacgagactcatcttctgagaaagacgga
cgcagccccaacaagcgggagaaggaccatatccgtcggcccatgaatgccttcatgatc
ttcagcaagcggcaccgggccctggtccaccagcgtcacccaaaccaggataaccggact
gtcagcaagatcctgggcgagtggtggtatgcccttgggcccaaggagaaacagaagtac
cacgatctagccttccaggtgaaggaggcccacttcaaggcccacccagattggaagtgg
tgcaacaaggaccgaaagaagtccagctcagaggccaagcccgcgagcctggggctggca
ggagggcacaaggagacgcgggagcggagcatgtcggagacgggcactgcggccgcccct
ggggtgtcctctgagctcctgtcagttgcagcccagacactcttgagctcagacagcaag
gctgcagggagtggcccatgtggagcagaacggctgcatgctgttgggggccctggctcg
gcccggccgcgggccttctcccacagtggtgtgcacagcctggatggcggggaggtagac
agccaggcgctgcaggaactcactcagatggtgtctggccccacatcatactcaggccca
aagccttccacccagtatggcactccgggccctttcgcagcccctggtgaaggaggcgcc
ttggcggccagcgggcggcccccactgctccccacccgagcctctcgttcccagcgtgca
gccagcgaggacatgaccagtgatgaggaacgcatggtcatctgtgaggaggaaggggac
gatgatgtcattgctgacgatggctttggcaccactgacattgatctcaagtgcaaggag
cgggtgactgacagtgaaagcggcgacagttctggggaggacccagagggcaacaagggc
tttggccgtaagttgttctcacctgtgatccgctcctcttttacccactgccgtcccaca
ctggaccccgagccaccaggtcccccggatccacctgcagcctttgggaaaggctatggt
cccacgtcatcctcttcctcctcacctgccaccacctcaacctctgtagccaactctttt
tcactgggctctggaagcttcaaggcccaggagtctggtcagggcagcacaacaggcccc
ctacggccaccaccccctggacctggaggccctgccacaccttccaaggccacacggttt
ctaccatcggaccctgcctccttccggcgcaagagacctgaaagtgtgggcagcctggag
ccatcaggcccctctgtgattgctgtgcctcccagcgggggaggaaccattctgcaaaca
ctggtcctgccccaaaacaaggaggaccgagagggcagcggagcccgtgtgccctcagct
tctgccccatcgctgtcttacggggcctcggcagcgcctctgtcccgccctgcagccacc
atggtcaccaatgtggttcggcccgtcagcagcactccggttcccatcgcctcgaagccc
ttcccctcctctggccgaaccgaggcatctccaaatgacacagcaggtgccagaactgag
atgagcactggctcccgggtgcccgggggctccccgctgggggtcagcttagtctattcg
gacaagaagtcagcagctgccacctcacctgccccacacttggtggctgggcccctgttg
ggcactgtggggaaagcccctgccactgtcaccaacctgctggtgggcacccctggctat
ggagcccctgcaccccctgctgttcagtttattgcccagggagccccgggcggtggaccc
actgcaggctcaggagcaggtgctggaagcggccccaatgggccagtacccctgggcatc
ctgcagccaggggccctgggcaaggctgggggaatcacccaggtgcagtatatactgccc
acgctgccccagcagcttcaggtggcacctgccccaggaccaccagctcctggggccaag
gcagcagctcccactggccccgcacccaccaccagcatccgtttcaccctcccacccggc
acctccaccaacggcaaggtcctggctgccactgcacccactcctggcatccccatcctg
cagtctgtaccctccgccccaccccctaaagcccaatcagtttctcccgtgcaggccccg
cccccaggtggctcagcccagctgctgccggggaaggtgctggtgcccctggctgccccc
agcatgtcagtacggggtggggggcctggccagccactgcccctggtgagcccacctttc
tcagtacctgtgcagaatggtgcccagccacccagcaagatcatccagctgacgcctgtg
cccgtgagcacacctggcggcctggtgccgcccctgagcccagcctcgcttcccggaccc
acctcccagccccagaaggtcttgctgccttcctctaccaggatcacctacgtgcagtcg
gcaggcgggcacactctgcctctgggtaccagccctgcgtccagccaggctggaaccgtc
acctcatacgggcccacgagctctgtagcactcggcttcacctcgctggggcccagcggc
cccgcctttgtgcagcccctgctctcagcaggccaagcccctctcctggctcctggccag
gtgggcgtgtcacctgtgcccagtccccagctgcctcctgcctgcacagcccccggaggc
cccgtgataactgcgttttaccctggcagccccgcctccacctcggcacccctggcccag
ccagcccaggccccaccaagcctggtctacaccgtggccaccagcaccaccccacctgct
gccaccattctgcccaaaggcccaccagcccctgccactgccacccccgcccccactagc
cctttccctagtgccacagcaggctccatgacctacagtttagtggcccccaaggcccag
cggcccagcccgaaggccccccagaaagtgaaggcagccatcgccagcattcccgtgggc
tcctttgaagcaggtgcctccgggcggtctggccctgcaccccggcagcctctggagcct
ggccccacccgggagccaaccgccccagagtctgagctcgaagggcaacccacaccaccg
gcccctccgccacccccagagacctggcctcccggtgcccggagcagcccccctctcccc
ctcccagccgaggagcggccaggaaccaagggccccgagaccatgcccagcaaattctcc
agctcatcttctgactggcgggtccctgggctgggcctggagagccgggagccccccact
cctcccagcccagccccagccccggccccaggcagtagcagtggtggcagtctggagggc
agcggtggaaggggggctggagacaccccagagcgcaaggaggtggctggtgctggcaag
aaggtgaaggtgcggcccccgcccctgaagaagaccttcgactccgtggacaacagggtc
ctgtctgaagtggactttgaggagcgctttgctgagcttcccgagtttcggccggaggag
gtgctgccctcccccacactgcagtctctggccacctctccccgggccatcctgggctct
tacagaaagaagaggaagaactccaccgacctggactcggcgcccgaggaccccacctca
cccaagcgcaagatgaggaggcgctccagctgcagctccgagcccaacaccccaaagagt
gccaagtgtgagggggacatcttcacctttgaccgcacaggtaccgaagctgaggacgtg
ctgggggagctggagtatgagaaggttccctactcatcgctgcgccgcaccctggaccag
cgccgcgccctggtcatgcagctcttccaggaccatggcttcttcccatcagctcaggcc
acggcagccttccaggcccgctatgccgacatcttcccatccaaggtttgtctgcagctg
aagatccgtgaagtgcgccagaagatcatgcaggcagccacccccacagagcagccccct
ggagctgaagcccccctccctggaccacctccagctggcactgctgctacccctgctccc
actcccagccctgctggcggccctgaccccacctcccctggcccggactctggcactgcc
caggctgccccgccactgcctccacccccagagccagggcctggacagcctggctgggag
ggccccccccagccctctccccctccctctggcccctccacaactgccaccggcaggtga
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integrated database retrieval system
