Dipodomys spectabilis (banner-tailed kangaroo rat): 122100652
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Entry
122100652 CDS
T07891
Symbol
Htt
Name
(RefSeq) huntingtin
KO
K04533
huntingtin
Organism
dsp
Dipodomys spectabilis (banner-tailed kangaroo rat)
Pathway
dsp05016
Huntington disease
dsp05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
dsp00001
]
09160 Human Diseases
09164 Neurodegenerative disease
05016 Huntington disease
122100652 (Htt)
05022 Pathways of neurodegeneration - multiple diseases
122100652 (Htt)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dsp03019
]
122100652 (Htt)
04131 Membrane trafficking [BR:
dsp04131
]
122100652 (Htt)
03029 Mitochondrial biogenesis [BR:
dsp03029
]
122100652 (Htt)
Messenger RNA biogenesis [BR:
dsp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
122100652 (Htt)
Membrane trafficking [BR:
dsp04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
122100652 (Htt)
Mitochondrial biogenesis [BR:
dsp03029
]
Mitochondrial quality control factors
Regulator of mitochondrial biogenesis
Other regulator of mitochondrial biogenesis
122100652 (Htt)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Htt_C-HEAT
Htt_N-HEAT
Htt_bridge
Htt_N-HEAT_1
HEAT
HEAT_EZ
HEAT_EF3_N
Rad26-like_helical_rpts
Motif
Other DBs
NCBI-GeneID:
122100652
NCBI-ProteinID:
XP_042526894
LinkDB
All DBs
Position
Unknown
AA seq
3123 aa
AA seq
DB search
MATLEKLMKAFESLKSFQQQQQQQQQQSPPPPPPQSPQQPPQAQPPPPPPPPPPPPPPPP
PGPAVADEPLPRPKKELAATKKDRVNHCLTICENIVAQSLRNSPEFQKLLGIAMELFLLC
SDDAESDVRMVADECLNKVIKALMDSNLPRLQLELYKEIKKNGAPRSLRAALWRFAELAH
LVRPQKCRPYLVNLLPCLTRTSKRPEESVQETLAAAIPKIMASFGNFANDNEIKVLLKAF
IANLKSNSPTVRRTAAGSAVSICQHSRRTQYFYSWLLNVLLGLLVPVEEEHSTLLILGVL
LTLRYLVPLLQQQVKDTSLKGSFGVTRKEMEVSPSAEQLVQVYELTLHHTQHQDHNVVTG
ALELLQQLFRTPPPDLLQALTMPGGLGQLAAAQEEAQGRDRSGSIVELLAGGGSSCSPIL
SRKQKGKILLGEEEALEDDSESRSDVSSAAFAASVKSEIGGELAASPGISTPGSVGHDII
TEQPRSQHTLQADSVDLSGCDLTSAATDGDEEDILSHSSSQISAVPSDPALDLNDGTQAS
SPISDSSQTTTEGPDSAVTPSDSSEIVLDGADSQCPSVQLGQPQEDEGAECVLPGGDSSA
FRNSSLALQKVQLLESMGHSRQLSDSSVDKFVSRDEAPEPGDTETKPCRIKGDIGHSTDD
DSAPLVHCVRLLSASFLLTGKKNALVPDRDVRVSVKALALSCVGAAVALHPESFFSRLYK
APLAPMEYPEEQYVSDILNYIDHGDPQVRGATAILCGTLVCSTLSRSRFHVGDWLGTIRV
LTGNRFSLADCIPLLRKTLKDESSVTCKLACTAVRHCVMSLCSSSYSDLGLQLLIDVLSL
RNSPYWLLRTELLETLAEIDFRLVSFLEAKAESLHRGAHHYTGLLKLQERVLNNVVIYLL
GDEDPRVRHVAAASLVRLVPKLFYKCDQGQADPVVAVARDQSSVYLKLLMHETQPPSHFS
VSTITRIYRGYSLLPSITDVTMENNLSRVIAAVSHELITSTTRALTFGCCEALCLLSAAF
PVCVWSLGWHCGAPPLSASDDSRKSCTVGMATMILTLLSSAWFPLDLSAHQDALVLAGNL
LAASAPKSLRSSWTSEEEANPTATRQEEVWPALGDRTLVPMVEQLFSHLLKVINICAHVL
DDVTPGPAIKAALPSLANPPSLSPIRRKGKEREPGEQASVPPSPKKGNEANTASRQSDSS
GPVTASKSSSVGSFYHLPSYLRLHDVLKATHANYKVTLDLQNSTEKFGGFLRSALDVLSQ
ILELATLQDIGKCVEEILGYLKSCFSREPMMATVCVQQLLKTLFGTNLASQFDSLSWNPS
KSQGRAQRLGSSSMRPGLYHYCFMAPYTHFTQALADASLRNMVQVEQEHDASGWFDVLQK
VSTQLKTNLTSVTKNRADKNAIHNHIRLFEPLVIKALKQYTTTTSVQLQKQVLDLLAQLV
QLRVNYCLLDSDQVFIGFVLKQFEYIEVGQFRESEAIIPNIFFFLVLLSYERYHSKQIIG
IPKIIQLCDGIMASGRKAVTHAIPALQPIVHDLFVLRGTNKADAGKELETQKEVVVSMLL
RLIQYHQVLEMFILVLQQCHKESEDRWKRLSRQVADIILPMLAKQQMHIDSHEALGVLNT
LFEILAPSSLRPVDMLLRSMFVTPSTMASVSTVQLWVSGILAILRVLISQSTEDIVLSRI
QELSFSPYLISCPVINRLRDGDSSSTMGEHTERKQVKSLPEEIFSRFLLQLAGVLLEDIV
TKQLKVEMSEQQHTFYCQELGTLLMCLIHIFKSGMFRRITAAATKLFSSDSGEGSFYTLE
SLNAHVRSMVPTHPALVLLWCQILLLVNHTDHCWWAEVQQTPKRHSLSCTKSLSPQMSDE
EDSDSAAQLGMCNREIVRRGALILFCDYVCQNLHDSEHLTWLIVNHIQDLISLSHEPPVQ
DFISAIHRNSAASGLFIQAIQSRCENLSTPTTLKNTLQCLEGIHLSQSGAVLTLYVDRLL
GTPFRALARMVDTLACRRVEMLLAANLQSSMAQLPVEELNRIQEHLQSSGLAQRHQRLYS
LLDRFRLSTVQDSLSPLPPVTSHPLDGDGYMPLETVIPDKDWYLRLVRSQCWTKSDSALL
EGAELVNRIPAEDMSVFMMSSEFNLSLLAPCLSLGMSEIACGQKSVLFEAARGVTLDRVT
GIVQQLPAVHQVFQPFLPTEPTGYWSKLNNLFGDATLYQTMTTLARALAQYLVVISKVPT
HLHLPAEKERDTVRFVVMILEALAWHLIHEQIPLSLDLQAGLDCCCLALQVPGLCSVISS
AEFVTHVCSLIHCVRFLLEAIVVQPGDQLLSPESRLNTPTTVREEKVDSDTQNPRCVAVA
CEMVAEMVESLQSVLALGHKRNGSVPAFLTAVLKNIVISLARLPLVNSYTRVPPLVWKLG
WSPKPGGDFGTVFPEIPVEFLQEKEIFKEFIYRINTLGWTSRTQFEETWATLLGVLVTQP
LVLEQEESPPEEDMERTQIHVLAVQAITSLVLSAMTVPVAGNPAVSCLEQQPRNKPLKAL
DTRFGRKLSVIRGVVEQEIQAMVSRRENIATHHPYQAWDPVPSLSPATTGALISHDKLLL
QTNPERELGNMSYKLGQVSIHSVWLGNNITPLREEEWDEEEEEEADIPAPASPPMSPVNS
RKHRAGVDIHSCSQFLLELYSRWILPSSSARRTPVILISEVVRSLLVVSDLFTERTQFEM
MYLTLTELRRVHPSEDEILVQYLVPATCKAAAVLGMDKAVAEPVSRLLESTLRSSHLPSQ
IGALHGILYVLECDLLDDTAKQLIPVVSDYLLSNLKGAAHCVNVHSQQHVLVMCATAFYL
IENYPLDVGPEFSASIIQMCGVMLTGSEDSTPSTIYHCALRGLERLLLSEQLSRLDTESL
VKLSVDRVNVHSPHRAMAALGLMLTCMYTGKEKASPGRASDPSPAAPDSESVIVAMERVS
VLFDRIRKGFPCEARVVARILPQFLDDFFPPQDVMNKVIGEFLSSQQPYPQFMATVVHKV
FQTLHSAGQSSMVRDWVMLSLSNFTQRTPVAMAMWSLSCFFVSASTSFWVSAILPHLISR
MGKLEQVDVNLFCLVATDFYRHQIEEEFDRRAFQSVFEVVATPGGPYHRLLTCLRNVHKV
TAC
NT seq
9372 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccctggagaagctgatgaaggccttcgaatccctcaagtcgttccagcagcag
cagcagcaacagcaacagcagtcgccgccgccgccgccgcctcagtcgcctcagcagccg
ccgcaggcgcagccgccgccgcccccgccgccgccgccgccgcccccgccgccgccgccg
cccggcccggccgtggccgacgagccgctgccccgaccaaagaaggaacttgcagccacc
aaaaaagaccgggtgaatcattgtctgacaatatgtgaaaacatagtggcacaatctctc
agaaattctccagaatttcagaaacttctgggtatcgctatggaactttttctgctgtgt
agtgatgatgcggagtcagatgtcaggatggtggctgatgaatgcctcaacaaagttata
aaagctttgatggattctaatctgccaaggctacagttagaactctataaggaaattaaa
aagaatggggcccctcgaagtctgcgtgctgccctttggaggtttgctgagctggctcac
ctggttcgacctcagaaatgcaggccttacctggtgaatctcctgccatgcttaactcga
acaagcaagagacccgaggaatcggtccaggagaccttggctgcagctattcccaaaatt
atggcttcttttggcaattttgcaaatgacaatgaaattaaggtcctgttaaaggctttc
atagcaaatctgaaatcaaattcccccactgtccgtcgcaccgcagctggctctgcagtg
agtatctgccagcactccaggaggactcagtacttctacagctggcttctgaatgtgctc
ctaggtctgctggtacctgtggaggaagagcactccacactcctgatcctcggcgtgctg
ctcacattgaggtatctggtacctttactacagcagcaggtcaaggacacaagcctgaaa
ggcagctttggggtgacacggaaagaaatggaagtctctccttctgctgagcagcttgtc
caggtatatgaactgactttgcatcacacgcaacaccaagaccacaatgtggtgacagga
gcactggagctcctacagcagctcttccgcaccccaccgccggacctgctgcaggcactg
accatgccaggtgggcttggacagctagctgcagctcaagaggaggcccagggccgagac
cgcagcgggagcattgtggaacttctagccggagggggttcttcatgcagccctatcctt
tcaaggaagcaaaaaggcaaaatactgttaggagaagaagaagccctggaagacgactca
gaatcaagatctgacgtcagcagtgcagcctttgcagcctcagtgaagagtgagatcggt
ggagagctggctgcctctcccgggatctccactcctgggtctgtgggtcatgacatcatt
acggagcagcctcgttcacagcacacgctgcaagcagactctgtggacctctctggctgt
gacttgactagtgctgccactgatggagatgaggaggacatcttgagccacagctccagc
caaatcagtgcagttccatctgaccctgctctggacctaaatgatgggacccaggcctcc
tcacctatcagtgacagctcccagaccaccactgaaggacctgactcggccgtgacaccc
tccgacagttctgaaattgtgttagatggtgctgacagccagtgccccagcgtgcagctc
ggccagccgcaggaggacgagggagctgagtgtgttcttcctggtggagactcgagtgct
ttcagaaactcctccctggcacttcagaaggtacagttattggagagcatgggtcacagc
aggcagctttctgacagcagtgtcgataaatttgtgtcaagagatgaagcgcctgaacca
ggcgacacagagaccaagccttgccgaatcaaaggtgatatcggacactctactgatgat
gattctgctcctctggtccattgtgttcgccttttatcggcatcatttttgttaactggg
aaaaagaatgccctggttccagacagagacgtgagggtcagtgttaaggctctggccctc
agctgtgttggagcagccgtggcccttcatccggagtcttttttcagcagactttataaa
gcaccccttgctcccatggagtaccctgaggagcagtatgtctcagacatcttgaactat
attgatcatggagacccacaggtcagaggagccactgccattctctgtgggactctcgtc
tgctccaccctcagccgctcccgcttccatgtgggggactggcttggcaccatcagagtc
ctaacagggaatagattttctttggcagactgcattcctttgctgaggaaaactttgaag
gatgagtcttctgttacctgtaagctggcctgtacagctgtgaggcactgtgtcatgagt
ctctgcagcagcagctacagtgacctgggattacagctgctcattgatgtgctgtctctg
aggaatagcccctactggctgctgaggacagagctgttggagactcttgctgagatcgac
ttcaggctggtgagctttttggaggcaaaagcagaaagcttgcacagaggggctcatcat
tacacagggcttttaaaactgcaagaacgagtcctcaataatgtggtcatctatttgctt
ggggatgaagaccccagggtgcgacatgttgctgcagcttcattagtaaggttggttcca
aagctgttttataaatgtgaccaaggacaggcagatcccgtagtggctgtggcaagagat
caaagtagtgtttacctgaagctgctcatgcacgagacacagcctccgtcgcacttctcc
gtcagcaccattaccagaatatatagaggttatagcttactaccaagcataacagatgtc
accatggaaaataacctgtcaagagttattgctgcagtttctcatgagctgatcacatca
accactagggcactcacatttggatgctgtgaagctttgtgtcttctttctgcagctttt
ccagtttgtgtctggagtttaggttggcattgtggagcgcccccactcagtgcctccgac
gactctagaaaaagctgtaccgtggggatggccaccatgattctcaccttgctctcgtca
gcttggttcccattggatctctcagcccatcaagacgccttggttttggctggaaacttg
cttgcagccagtgcccccaagtctctgagaagttcatggacctctgaagaagaagccaac
ccaacagccaccagacaagaggaggtgtggccagcgttaggtgaccggacactggtgccc
atggtagagcagcttttctcccacctgctgaaggtgatcaatatctgtgctcacgtcttg
gatgatgtgactccggggccagcaattaaggcagctttgccttctctagcaaacccccct
tctctaagtcccatccggcgaaaggggaaggagagagaaccaggagaacaggcatctgtt
ccacctagtcccaagaaaggcaatgaggccaatacagcctctcgacaatcagattcctca
ggccctgtcacagcaagtaaatcttcctcagtgggcagtttctaccatctcccatcctac
ctcagactgcatgatgtcctgaaggccactcatgccaactacaaggtcactttggatctt
cagaacagcactgagaagtttggggggttcctgcgctctgccttggacgttctttctcag
attctagagctggcaacgctgcaggacattgggaagtgtgttgaagagatccttggttac
ctgaaatcctgttttagtcgagagccaatgatggcaacggtttgcgttcagcagctactg
aagacgctctttggaacaaacttggcttcccagtttgacagcttatcttggaaccccagc
aagtctcaaggccgagcccagcgcctgggctcttcaagtatgagaccaggcttgtatcac
tactgcttcatggctccatacacccacttcacgcaagccctggcagatgccagcctgagg
aacatggtgcaggtggagcaggagcatgatgcctcgggatggtttgatgtactccagaaa
gtgtccacccaattgaagactaacctcacgagcgtcacaaagaatcgagctgataagaac
gctattcacaaccacattcgtttatttgaaccccttgttataaaagctttaaaacagtac
accactacaacatctgtgcagttgcagaagcaggttttggatttgctggcacagctggtt
cagctacgggtcaattactgtctcctggattcagatcaggtgttcattggatttgtgttg
aaacaatttgaatacatcgaagtaggccaattcagggaatcagaggcaattattccaaac
atctttttcttcctggtattactatcttatgagcgttaccattcaaaacagatcatcggg
attcctaagatcattcagctgtgcgacggcatcatggccagtgggaggaaggctgtgaca
catgccataccagctctgcagcccatagttcatgacctctttgtgttaaggggaacaaat
aaggctgatgcaggcaaagagcttgaaacccagaaggaagtggtggtgtcgatgttgttg
agactcatccagtaccatcaggtgctggagatgttcatccttgtcctgcagcagtgccac
aaagagagtgaggacaggtggaagcgcttatctcggcaggttgccgacatcatcctgcct
atgttagccaagcagcagatgcatattgattctcatgaagcccttggagtgttaaatacc
ttatttgagattttggccccttcctccctccgtcctgtggacatgcttttgcggagtatg
tttgtcacgccaagtacaatggcatctgtgagcactgttcaactgtgggtatctggaatc
ctagccattctgagggttctcatttcccagtcaactgaagatattgttctttctcgtatt
caggagctctccttctctccctatttaatctcctgtccggtaattaaccgtttaagagat
ggagacagtagctcaacaatgggagaacacactgaaaggaaacaagtgaagagtttgcca
gaagaaatattctcaaggtttctgttacagctggctggtgttcttctagaggacattgtt
acaaaacaactgaaagtggaaatgagtgaacagcagcatactttctactgccaggaatta
ggcacactgctcatgtgcctcatccacatcttcaagtctggaatgttccggagaattaca
gcagctgccactaaactcttcagcagcgacagtggtgagggcagcttctacaccctagag
agtctgaacgcgcacgtgcgctccatggtgcccacgcacccggccctggtgcttctctgg
tgccagatcctgctgcttgtcaaccacacagaccactgctggtgggcagaggtgcaacag
actcccaagagacacagtctatcctgcacaaagtcgctcagcccccagatgtctgatgag
gaggattctgactcagcagcccaacttggaatgtgcaacagagagattgtgcgaagggga
gccctcattctcttctgtgattatgtctgtcagaatctccatgactcagagcacctaacg
tggctcattgtgaatcacattcaagatctgatcagcctgtcccatgagcctccagtccag
gactttattagtgcaattcatcggaattctgccgccagtggcctttttatccaggcaatc
caatctcgttgtgaaaatctttcaacgccaaccactctgaagaacacgctgcagtgcttg
gaaggcattcacctcagccagtcgggcgctgtgctcacactgtatgtggacaggctcctg
ggcacccccttccgcgcactggctcgcatggttgacaccctggcctgccgccgggtagaa
atgcttttggctgcaaatttacagagcagcatggcccagttaccagtagaagagctgaac
agaatccaggagcacctccagagcagtgggctcgcgcagagacatcaaaggctctattcc
ctgctggacaggttccgactctccactgtgcaagattccctcagccccctacctccggtc
acttcccatccgctggacggggatgggtacatgccactggaaacggtgattccagacaaa
gactggtacctccgtctggtcagatcacaatgttggaccaagtcagattctgcactgctg
gaaggtgcggagctggtgaatcgcatccctgctgaagacatgagcgtgttcatgatgagc
tcggagttcaacctaagcctcttggctccatgcctgagcctcggcatgagcgagatcgcg
tgtggccagaagagtgtcctttttgaagctgctcgtggggtgactctggaccgtgtgact
ggcatcgtccagcagcttcctgctgtccatcaggtcttccagcctttcctgcccacggag
cccacaggctactggagcaagctgaataatctatttggggatgccacattataccagacc
atgaccacgctggctcgggccctggcgcagtacctagtagtgatctccaaagtacccacc
catttgcaccttcctgctgagaaggagagggacacagtgaggttcgtggtgatgatcctc
gaggccctggcatggcatttgatccacgagcagatcccactgagtctggacctccaagcg
gggctggactgctgctgcctggcactgcaggttcctggcctctgcagtgtgatctcctct
gcggagtttgtgacccacgtctgctccctcatccactgtgtgcgattcctccttgaagct
attgtggtacagcctggagaccagcttctcagtccggaaagcagactgaacactccaact
actgtcagagaggagaaggtggactcagacacacaaaaccccaggtgtgtggctgtggcc
tgtgagatggtggccgagatggtggagtctctgcagtcggttctggccttaggccacaag
aggaatggcagcgtgcccgcatttctcacagccgtgctgaagaacattgtcatcagcctg
gcccgcctcccccttgtcaacagctacacccgtgtgcccccactggtgtggaaactcgga
tggtcgcccaaaccaggaggggattttggcaccgtgtttcctgagatccctgtggagttc
ctccaggagaaggaaatcttcaaagagttcatctaccgcatcaacaccctggggtggact
agtcggactcagtttgaagaaacttgggccactctccttggtgtcctggtgacgcagccg
cttgtgctggagcaggaggaaagcccaccggaggaagacatggagaggacccagatccac
gtgctggccgtgcaggccattacctccctggtgctcagtgccatgactgtgcctgtggct
ggcaaccccgctgtgagctgcttggaacaacagccaaggaacaaacccctgaaagcactg
gacaccaggttcgggagaaagttgagcgtgatcaggggggttgtagagcaggagattcaa
gccatggtttctcggagagaaaacatcgccacccatcacccttaccaggcctgggatccg
gtcccctccctgtcccctgctactacaggtgccctcatcagccacgacaagctgctcctg
cagaccaacccggagcgcgagctgggcaacatgagctacaagctgggccaggtatccata
cactcggtgtggctggggaacaacatcacaccattgagagaggaggaatgggatgaggag
gaagaggaggaagctgatatccccgcaccagcatctcctcccatgtctccagtcaactcc
aggaagcaccgggctggagtcgatattcactcgtgctcgcagtttttgcttgaattatac
agccgatggatcctaccgtccagctctgccagaaggaccccagtcatcctcatcagtgaa
gtggttcgatcgcttctcgtggtctcagacttgttcaccgaacgcacccagtttgagatg
atgtacctgacgctgacagagctgcggagggtgcacccttcagaagatgagatccttgtt
cagtacctggtacctgccacctgcaaggcagccgctgtgctcggcatggacaaggctgtg
gcagagccagtcagccgtctgctggagagcacactcaggagcagccacctgcccagccag
atcggagccctgcatggcatcctgtacgtgctggagtgcgacctcctggatgacaccgcg
aagcagctcatccccgtcgtcagcgactatctcctgtctaacctcaaaggggcagcccac
tgcgtgaacgttcacagccagcagcacgtgctggtgatgtgtgccaccgcgttctaccta
atcgagaactatcctctagatgtggggccggagttttctgcatctataatacagatgtgt
ggagtgatgctgaccggcagcgaggactccaccccgtccaccatttaccactgcgccttg
cgcggcctggagcgcctcctgctatcagagcagctctcccggctggacaccgagtccctg
gtcaagctgagtgtggacagggtgaacgtgcacagcccgcaccgggccatggcagcgcta
ggcctgatgctcacctgcatgtacacaggaaaggagaaagccagcccaggcagagcctcg
gaccccagccctgcagccccagatagtgagtccgtgattgtcgctatggagcgcgtgtct
gttctcttcgacaggatcaggaagggatttccttgtgaagccagggtggtggcaaggatc
ctgcctcagttcctggacgacttcttcccgccccaggatgtcatgaacaaagtcatcgga
gagtttctctccagccagcagccgtacccgcagttcatggccaccgtggtgcacaaggtg
ttccagactctgcacagcgcgggacagtcatcgatggtccgggattgggtcatgctgtcc
ctgtccaacttcacgcagagaacgcctgttgcgatggccatgtggagcctctcctgcttt
tttgtcagcgcgtctaccagcttctgggtttcagctatccttccgcacctcatcagcagg
atgggcaagctggagcaggtggatgtgaaccttttctgcctggttgccacagacttctac
agacaccagatagaggaggagtttgatcgcagggccttccagtctgtgtttgaagtggtt
gccacaccaggaggcccgtatcatcggctacttacgtgtttgcgaaatgtccataaggtc
accgcctgctga
DBGET
integrated database retrieval system
