Dipodomys spectabilis (banner-tailed kangaroo rat): 122100816
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Entry
122100816 CDS
T07891
Symbol
Upf1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
dsp
Dipodomys spectabilis (banner-tailed kangaroo rat)
Pathway
dsp03013
Nucleocytoplasmic transport
dsp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dsp00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
122100816 (Upf1)
03015 mRNA surveillance pathway
122100816 (Upf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dsp03019
]
122100816 (Upf1)
Enzymes [BR:
dsp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
122100816 (Upf1)
5.6.2.5 RNA 5'-3' helicase
122100816 (Upf1)
Messenger RNA biogenesis [BR:
dsp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
122100816 (Upf1)
mRNA cycle factors
Common to processing body (P body) and stress granule
122100816 (Upf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
122100816
NCBI-ProteinID:
XP_042527100
LinkDB
All DBs
Position
Unknown
AA seq
1129 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGPGGPGGGAGG
PGGPGGAGAAAGQLDAQVGPEGVLQNGAVDDSVAKTSQLLAELNFEEDEEDTYYTKDLPI
HACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETV
LECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLS
WLVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAY
QYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGNEDLVII
WLRDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNF
QVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLP
DLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQ
LTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSS
ADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVP
VVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALS
AFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTE
AANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAF
QGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLL
SYYKEQKALVEGPLNNLRESLMQFSKPRKLVNTVNPGARFMTTAMYDAREAIIPGSVYDR
SSQGRPSNMYFQTHDQIGMISAGPSHVAAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRG
TPKSKTGRGGRQKNRFGLPGPSQTNLPNSQASQDVASQPFSQGALTQGYISMSQPSQMSQ
PGLSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3390 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacggccccagctcgcagacgctcaccttcctggacacggaggag
gccgagctgctgggcgccgacacgcagggctccgagttcgagttcaccgacttcacgctc
cccagccagacgcagacgccgcccggcggccccggcggcccgggcggcggcgcggggggc
ccgggcgggcccggcggcgcgggcgcggcggccggacagctggacgcgcaggttggaccc
gagggcgtcctgcagaatggggctgtggatgacagtgtggccaagaccagccagctgctg
gcagagctgaacttcgaggaggacgaggaagacacgtactacaccaaggacctccccatc
catgcctgcagttactgcggaatccatgaccccgcctgtgtggtgtactgcaacaccagc
aagaagtggttctgtaacggccgcgggaacacttctggcagccacatcgtgaaccacctg
gtgagggccaagtgcaaggaggtgacgctgcacaaggacgggccgctgggcgagacggtg
ctggagtgctacaactgcggctgccgcaacgtcttcctgctcggcttcatcccggccaag
gccgactcggtggtggtgctgttgtgccggcagccctgcgccagccagagcagcctgaag
gacatcaactgggacagctcgcagtggcagcccctgatccaggaccgctgcttcctgtcc
tggctggtgaagatcccgtcggagcaggagcagctgcgggcgcggcaaatcaccgcgcag
cagatcaacaagctggaggagctctggaaggagaacccctcagccacgctggaggacctg
gagaagcccggagtggacgaggagccgcagcacgtgctgctgcggtacgaggacgcctac
cagtaccagaacatctttggccccctggtcaagctggaggccgactacgacaagaagctg
aaggagtctcagactcaagataacatcacagtcaggtgggacctgggccttaacaagaag
agaatcgcctacttcactttgcccaagactgactctggtaatgaggatttagtcataatt
tggttaagagacatgcggctcatgcagggagacgagatctgcctgcggtacaagggcgac
ctcgcacccctctggaaggggatcggtcacgtcatcaaggtcccggataattacggtgac
gagatcgccattgagctccgcagcagcgtgggggcccccgtggaggtcacccacaacttc
caggtggacttcgtgtggaagtccacctcctttgacaggatgcagagcgccttgaaaacc
ttcgctgtggacgagacctcggtgtcgggctacatctaccacaagctgctgggccatgag
gtggaggacgtgatcatcaagtgccagctgcccaagcgcttcacagcgcaggggctccca
gacctcaaccactctcaggtgtatgccgtgaagaccgtgctgcagaggccactgagcctc
atccagggcccgccaggcactggcaagacggtgacgtcggccaccatcgtctatcacctg
gctcggcagggcaatgggcccgtgctggtctgcgccccgagtaacatcgccgtggaccag
ctgaccgagaagatccaccagaccgggctgaaggtggtgcgcctgtgcgccaagagccgg
gaggccatcgactcgccggtgtccttcctggccctgcacaaccagatcaggaacatggac
agcatgccggagctgcagaagttgcagcagctgaaggacgagaccggggagctgtcctcg
gcggacgagaagcggtaccgcgccctcaagcgcaccgctgagagagagctgctcatgaac
gcggatgtcatctgctgcacctgcgtgggcgcgggcgaccccaggctggccaagatgcag
ttccgctccatcctcatcgacgagagcacacaggccactgagcccgagtgcatggtgccc
gtggtcctcggggccaagcagctgatcctggtgggtgaccattgccagctgggcccggtg
gtgatgtgcaagaaggcggcgaaggccgggctctcgcagtcgctctttgagcgcctggtg
gtgctgggcatccggcccatccgcctgcaggtccagtaccgcatgcaccccgccctcagc
gccttcccctccaacatcttctacgagggctcgctgcagaacggcgtcaccgcagctgac
cgtgtgaagaagggctttgacttccagtggccgcagcctgacaagcccatgttcttctac
gtgacccagggccaggaggagattgctagctcgggcacatcctacctgaaccggacggag
gccgcgaacgtggagaagatcaccacgaagctgttgaaggcgggcgccaagcccgaccag
atcggcatcatcacgccgtacgagggtcagcgctcatacctggtgcagtatatgcagttc
agcggctccctgcacaccaagctctaccaggaagtggagattgccagtgtggacgccttc
cagggccgtgagaaggacttcatcatcctgtcgtgcgtgcgtgccaacgagcaccagggc
atcggcttcctcaacgacccgcggcgcctcaacgtggcgctgacccgggccaggtacggc
gtgatcatcgtgggcaacccgaaggcgctgtcgaagcagccgctgtggaaccacctgctg
agctactacaaggagcagaaggcgctggtggaggggccgctcaacaacctgcgtgagagc
ctcatgcagttcagcaagccccgcaagctggtcaacaccgtgaaccctggggcccgcttc
atgaccaccgccatgtacgacgcccgcgaggccatcatccccggctctgtctacgacagg
agcagccagggccggccgtcaaacatgtacttccagacgcacgaccagatcggcatgatc
agcgcgggccccagccacgtggcggccatgaacatccccatccccttcaacctggtcatg
ccgcccatgccgcccccaggctacttcggccaggccaacgggcctgccgcgggccggggc
acccccaaaagcaagactggccgtgggggccgccagaagaatcgctttgggcttcctggg
cccagccagaccaatctccccaacagccaggccagccaggatgtggcgtcccagcccttc
tcgcagggcgccctgacgcagggctacatctccatgagccagccctcgcagatgagccag
cccggcctctcccagcccgagctgtcccaggacagctacctcggggatgagttcaaatcc
cagatcgacgtggccctgtcgcaggactccacctaccagggcgagcgggcctaccagcac
ggcggcgtgacagggctgtcccagtactag
DBGET
integrated database retrieval system
