Dipodomys spectabilis (banner-tailed kangaroo rat): 122100916
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Entry
122100916 CDS
T07891
Symbol
Ythdc2
Name
(RefSeq) 3'-5' RNA helicase YTHDC2 isoform X1
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
dsp
Dipodomys spectabilis (banner-tailed kangaroo rat)
Brite
KEGG Orthology (KO) [BR:
dsp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dsp03041
]
122100916 (Ythdc2)
Enzymes [BR:
dsp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
122100916 (Ythdc2)
Spliceosome [BR:
dsp03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
122100916 (Ythdc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
OB_NTP_bind
HA2_C
Helicase_C
R3H
DEAD
Ank_2
HA2_N
AAA_19
Ank
nSTAND3
AAA_22
ATPase
PhoH
AAA_16
AAA_7
UvrD-helicase
Ank_4
AAA_29
PBP-Tp47_a
ABC_tran
SRP54
AAA_23
Motif
Other DBs
NCBI-GeneID:
122100916
NCBI-ProteinID:
XP_042527249
LinkDB
All DBs
Position
Unknown
AA seq
1427 aa
AA seq
DB search
MSRPSSVSPRPPAPGAGGPASGGPGGGGRAKGLKDIRIDEEVKIAVNIALERFRYGDQRE
MEFPSSLTSTERAFIHRLSQSLGLVSKSKGKGANRYLTVKKKDGSETAHAVMTCNLTHNT
KHAVRSLIQRFPVTNKERTELLPKTERGNVFAVEAENREMSKTSGRLNNGIPQVPVKRGE
SEFDAFRQSLPVFEKQEEIVNIIKENKVVLIVGETGSGKTTQIPQFLLDDCFKNGIPCRI
FCTQPRRLAAIAVAERVAAERRERIGQTIGYQIRLESRVSPKTLLTFCTNGVLLRTLMAG
DSTLSTVTHVIVDEVHERDRFSDFLLTKLRDLLQKHPTLKLILSSAALDVNLFIRYFGSC
PVIYIQGRPFEVKEMFLEDILKTTGYTNKEMLKYKKEKQREEKQQTTLTEWYSAQENTFK
PESQRQRAVPSVTEEYDVLDDGGDAVFSQLTEKDVNCLEPWLIKDMDSCLSDIWLHKDID
AFAQVFHLILTENVSVDYRHSETSATALMVAAGRGFTSQVEQLISMGANVHSKASNGWMA
LDWAKHFGQTEIVDLLESYSASLEFGNLDESSLVQTNGNDLSAEDRELLKAYHHSFDDEK
VDLDLIMHLLYNICHSCDAGAVLIFLPGYDEIVGLRDRILFDDKRFADNTHRYQVFMLHS
NMQTSDQKKVLKNPPAGVRKIILSTNIAETSITVNDVVFVIDSGKVKEKSFDALNFVTML
KMVWISKASAIQRKGRAGRCRPGICFRLFSRLRFQNMLEFQTPELLRMPLQELCLHTKLL
APVNCTIADFLMKAPEPPPALIVRNAVQMLKTIDAMDAWEDLTELGYHLADLPVEPHLGK
MVLCAVVLKCLDPILTIACTLAYRDPFVLPTQASQKRAAMLCRKRFTAGTFSDHMALLRA
FQAWQKARSDGWERAFCEKNFLSQATMEIIIGMRTQLLGQLRASGFVRARGGGDIRDVNT
NSENWAVVKAALVAGMYPNLVHVDRENVVLTGPKEKKVRFHPTSVLSQPQYKKIPPANGQ
AAAIQALPTDWLIYDEMTRAHRIANIRCCSAVTPVTVLVFCGPARLASNALQEPSSFRAD
GVPNDSSDSEVEDRTTANLAALKLDEWLNFKLEPEAASLLLQLRQKWHSLFLRRMRAPSK
PWSQVDEATIRAIIAVLSTEEQSAGLQQPSGIGQRPRPMSSEELPLASSWRSNNSRKSSA
DTEFPDESTTAERVLTKSPSPALHPPQKYKDRGILHPKRSTEDRSDQCSVKSADSSTYPS
PCASPSPPSSGKGSKSPSPRPNMPVRYFIMKSSNLRNLEISQQKGIWSTTPSNERKLNRA
FWESSMVYLVFSVQGSGHFQGFSRMSSEIGREKSQDWGSAGLGGVFKVEWIRKESLPFQC
AHHLLNPWNDNKKVQISRDGQELEPQVGEQLLQLWERLPLGEKPTSD
NT seq
4284 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaggcccagcagcgtctccccgcggccgccggccccgggcgcgggcggcccggcc
tcggggggtcccgggggcggcggccgggccaagggactcaaggacattcgtatcgacgag
gaggtgaagatcgccgtgaacatcgccctggagcgcttccgatacggggaccagcgagaa
atggaatttccctcttctttgactagtactgaaagagcctttattcatcggttgagtcag
tctcttggtttggtctctaagagcaaaggaaagggagcaaatagatacctaactgtgaag
aagaaagacggatcagaaacagctcatgcagtgatgacctgtaatttgactcataataca
aaacacgctgttaggagcctaattcagagatttcctgtcaccaataaagagcgtactgaa
cttctgcctaaaacagaaagaggaaatgtgtttgcagttgaagctgaaaacagagaaatg
agcaagacgagcgggcgactcaacaatggcatacctcaagttccagtaaaaagaggagaa
tcagaatttgatgcattcaggcagtctttgccagtgtttgagaaacaagaagagattgtt
aacataattaaggaaaataaagtagttttgattgtaggagaaactgggtcaggaaagacc
acacagattcctcagttcctcttagatgactgctttaaaaatggaatcccctgccgcata
ttttgtacacagccaagacgattagcagccattgctgtggctgaaagagttgctgccgag
agaagggaaagaattggtcaaacaattggttatcagatccgattagaaagcagggtttct
ccaaagacactgctgacattttgcacaaatggggtgctgcttcgcacattgatggccggg
gacagcaccttgtcaacagtgacccacgtgattgtggatgaagtgcatgaacgggatcga
tttagtgattttttacttacaaagttaagagatttgttgcaaaagcacccaactttgaaa
ctgattctttcaagtgctgccttggatgtaaatctctttataagatattttggaagttgt
ccagtgatatatatacaaggaagaccatttgaggtaaaagaaatgtttctggaagatatt
ctaaaaacgactggatataccaacaaagaaatgttaaagtacaaaaaagaaaaacagcga
gaagagaaacagcaaaccacgctcacagaatggtactcggcacaggagaatacgttcaag
cctgagtctcagaggcagagagccgttcccagcgtgactgaagagtacgatgtactggat
gatggtggtgatgcagtcttcagtcagttgacagaaaaagatgtgaactgtctagaacca
tggctaataaaggacatggactcctgtctctctgacatatggctacataaagacatcgat
gcttttgctcaggtcttccaccttattttaaccgaaaatgttagtgttgattacagacat
agtgagaccagtgcgacagctctgatggttgctgctggacgaggcttcacaagtcaagta
gagcagttaatcagcatgggagccaatgttcatagtaaagcgtcaaatggctggatggct
ttagattgggctaaacactttggacagactgaaattgtggatcttctagaatcttacagt
gcttcattggagtttggcaatctagatgaaagttctctggtccaaacaaatggaaatgac
ctcagtgcagaagacagagagctcctgaaggcttaccatcacagttttgatgatgagaaa
gtagacttggatttgatcatgcatcttctatacaatatctgtcatagttgtgatgctggt
gcggtcctaatttttctgcctggatatgatgaaatagttggtctcagggatcgcatcctg
tttgatgacaagcggtttgctgacaatacacatagatatcaagtctttatgcttcattca
aatatgcaaacatctgatcaaaagaaggtattaaaaaacccacctgcaggtgttcgaaaa
ataatcctttccaccaacattgctgaaaccagcatcactgtcaacgatgttgtcttcgtc
attgattcgggcaaagtgaaagagaaatcctttgatgcattgaactttgtaacaatgtta
aaaatggtgtggatttccaaagctagtgctattcagcggaaaggcagagcggggcgatgt
agacctggaatttgtttccgtctgtttagtagactacgatttcagaatatgttggaattt
cagactccagaacttttgagaatgccattacaggagctttgtttacacaccaagctgtta
gccccagtgaattgcaccattgctgatttcctgatgaaagcccccgaacctccgccagct
ttaattgtaagaaatgcagtacagatgcttaagacaatagatgccatggacgcctgggaa
gatctgacagaactcgggtatcatttggctgacttgccagtagagccccatcttggcaag
atggtgctatgtgctgttgttctgaagtgtctggaccccatccttacaattgcctgcaca
ctagcgtaccgggaccctttcgttctgccaacgcaggcctctcaaaagcgagcggccatg
ctctgccggaagcgcttcactgcgggcaccttcagtgaccacatggctcttctcagagca
ttccaggcatggcagaaagcacggagtgatggatgggagcgagccttctgtgaaaagaac
tttctttcacaagccaccatggaaataattataggaatgagaacacagctgctcggtcag
cttagagcatcaggttttgttagagcgcgaggtggtggtgacatccgagatgttaacaca
aactccgagaactgggctgtcgttaaggctgcattggtggcaggcatgtatcctaattta
gtccatgtggacagagagaatgtagtactgacagggccaaaggagaaaaaagtacgattt
catcccacctcagttctcagtcagcctcaatataaaaagattcctccagccaatggtcag
gctgcagcaatccaggcactgcccacagattggcttatttatgatgagatgactagagcc
catagaatagctaatattagatgttgttcagcagtgacacctgtcactgtattggtgttc
tgtggaccagctcgactagcaagcaatgctcttcaggaaccttcatcctttagagcagat
ggcgttcccaatgacagtagtgacagtgaagtggaggacagaactactgctaacttggct
gcattgaaacttgatgagtggctcaattttaaactagagccagaggccgccagtttattg
ctgcagctcagacagaagtggcacagtctgtttttacgccgaatgagagctccatctaaa
ccctggtctcaagtggatgaagccaccatacgagcaattatagctgtgttaagtacggag
gagcaatctgcaggtttacagcaaccatctgggattggccagaggccaagacctatgtct
tcagaagaacttcctttggcatcctcttggaggtcaaataatagtaggaaaagttcagca
gacactgaatttcctgatgagtctactactgcagaaagagtactgacgaaatctccatct
ccagccttacaccctcctcagaagtacaaagacagaggaattttacatccaaagcggagc
actgaggaccgatcagaccagtgctctgtgaagtctgcggacagcagcacctacccaagt
ccttgtgcaagtccttccccaccatcttcaggaaagggctcaaaatctccttcaccaaga
ccaaacatgcctgttcggtacttcataatgaagagtagcaatctgagaaaccttgaaatt
tctcaacagaagggcatctggtctacaacccctagtaatgagcggaagctaaatcgggcc
ttttgggagagcagcatggtttacttggtattttctgttcaaggatctggacatttccag
gggttttcccgtatgtcttctgagataggaagggagaagagccaagactggggctcagcg
ggcctgggcggggtctttaaggtggagtggatacgaaaagagagccttcccttccagtgt
gcacaccacctgctcaacccgtggaatgacaacaagaaggtgcagataagccgggatggg
caggagctagaaccacaggttggtgaacagttgctccagttatgggaacgccttcctttg
ggagaaaaacccacaagtgactga
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integrated database retrieval system
