Dipodomys spectabilis (banner-tailed kangaroo rat): 122101801
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Entry
122101801 CDS
T07891
Symbol
Prpf6
Name
(RefSeq) pre-mRNA-processing factor 6
KO
K12855
pre-mRNA-processing factor 6
Organism
dsp
Dipodomys spectabilis (banner-tailed kangaroo rat)
Pathway
dsp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dsp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122101801 (Prpf6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dsp03041
]
122101801 (Prpf6)
Spliceosome [BR:
dsp03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
122101801 (Prpf6)
Complex C
U5 SnRNP specific factors
122101801 (Prpf6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PRP1_N
TPR_14
TPR_19
HAT_PRP39_N
TPR_16
Suf
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
TPR_17
TPR_2
ARM_TT21_2nd
FAT
ARM_TT21_C
T7SS_EccA1_N
Motif
Other DBs
NCBI-GeneID:
122101801
NCBI-ProteinID:
XP_042528175
LinkDB
All DBs
Position
Unknown
AA seq
941 aa
AA seq
DB search
MNKKKKPFLGMPAPLGYVPGLGRGATGFTTRSDIGPARDANDPVDDRHAPPGKRTVGDQM
KKNQAADDDDEDLNDTNYDEFNGYAGSLFSSGPYEKDDEEADAIYAALDKRMDERRKERR
EQREKEEIEKYRMERPKIQQQFSDLKRKLAEVTEEEWLSIPEVGDARNKRQRNPRYEKLT
PVPDSFFAKHLQTGESHTSVDPRQTQFGGLNTPYPGGLNTPYPGGMTPGLMTPGTGELDM
RKIGQARNTLMDMRLSQVSDSVSGQTVVDPKGYLTDLNSMIPTHGGDINDIKKARLLLKS
VRETNPHHPPAWIASARLEEVTGKLQVARNLIMKGTEMCPKSEDVWLEAARLQPGDTAKA
VVAQAVRHLPQSVRIYIRAAELETDIRAKKRVLRKALEHVPNSVRLWKAAVELEEPEDAR
IMLSRAVECCPTSVELWLALARLETYENARKVLNKARENIPTDRHIWITAAKLEEANGNT
QMVEKIIDRAITSLRANGVEINREQWIQDAEECDRAGSVVTCQAAMRAVIGIGIEEEDRK
HTWMEDADSCVAHNALECARAIYAYALQVFPSKKSVWLRAAYFEKNHGTRESLEALLQRA
VAHCPKAEVLWLMGAKSKWLAGDVPAARSILALAFQANPNSEEIWLAAVKLESENNEYER
ARRLLAKARSSAPTARVFMKSVKLEWVLGNIEAAQELCEEALKHYEDFPKLWMMKGQIEE
QGELMEKAREAYNQGLKKCPHSTPLWLLLSRLEEKVGQLTRARAILEKSRLKNPKNPGLW
LESVRLEFRAGLKNIANTLMAKALQECPSSGILWSEAVFLEARPQRKTKSVDALKKCEHD
PHVLLAVAKLFWSERKITKAREWFHRTVKIDSDLGDAWAFFYKFELQHGTEEQQEDVRKR
CENAEPRHGELWCTVSKDIANWQKKIGEVLVLVAARIKNTF
NT seq
2826 nt
NT seq
+upstream
nt +downstream
nt
atgaacaagaagaagaagccattcttgggcatgcccgctccgctcggctacgttccgggg
ctgggccggggtgccactggcttcaccacacggtcagatattggacctgctcgggatgca
aatgatcctgtggatgatcgccatgccccaccaggcaagagaactgtgggggaccagatg
aagaaaaaccaggctgctgatgatgatgatgaggatctgaatgacactaactatgatgag
tttaatggctatgccggaagcctgttctcaagtgggccttatgaaaaagatgatgaggaa
gcagatgctatttatgcagctctggataaaaggatggatgaaagaagaaaagaaagaaga
gagcaaagagagaaagaagagattgagaaatatcgaatggaacgtcctaaaatccagcag
cagttttctgacctcaagaggaagttggcagaagtcacagaggaagagtggctgagcatc
ccagaggttggcgatgccagaaacaaacgccagcggaatccacgctatgagaagctgacc
cctgtccccgatagtttctttgccaaacatttgcagactggagagagccacacttctgta
gaccctcgacaaacccaatttggaggtctgaacactccatacccaggtggcttgaacacg
ccataccccggtggcatgacacccggattgatgacacctggtacaggggagctggacatg
aggaagattggccaagcaagaaacactctgatggacatgaggctgagccaggtgtctgac
tcggtgagtgggcagactgtcgtggaccccaaaggctatctgacggatctaaactctatg
atccccacccacggaggggacatcaatgacatcaagaaggcacgactgctcctcaagtct
gttcgggagacaaacccccatcatcctccagcttggattgcttcagcccgccttgaagaa
gtcactgggaagctgcaagtggctcggaatcttattatgaaaggaacagagatgtgcccc
aagagtgaagatgtctggctagaagcagccaggttgcaacctggggacacagccaaggct
gtggtagcccaagctgtccgtcatctccctcagtctgttaggatttacatcagagcagca
gagctggaaacagatattcgagcaaagaagcgggttcttcggaaagcccttgagcacgtt
ccaaactcagttcgcttgtggaaagcagccgttgagctagaagagcctgaagatgctaga
atcatgctcagcagagctgtggagtgctgccctaccagtgtggagctctggcttgctctg
gcgaggctggagacttatgaaaatgcccgcaaggtcttaaataaagctcgtgagaacatt
cctacagaccggcacatctggatcacagctgcaaaacttgaggaagccaatggaaacaca
cagatggtggagaagatcattgaccgagccatcacttccttgcgggcgaatggtgtggag
attaatcgtgagcagtggatccaggatgctgaagagtgtgacagggctggaagtgtagtt
acctgtcaggctgccatgcgagctgtgattgggattgggattgaagaagaagatcggaag
cacacatggatggaggatgctgacagttgtgtggcccataatgccctggagtgtgcacga
gccatttatgcctatgccctgcaagtgtttcccagcaagaagagtgtgtggctacgagct
gcatactttgagaagaaccatggcaccagggagtctctggaagcacttctacagagggct
gttgcccactgcccaaaggcagaggtgttgtggctcatgggtgcgaagtctaagtggcta
gctggggatgtccctgctgccaggagcatcttggccctggcctttcaggccaaccccaac
agtgaggagatctggctggccgctgtgaaactggagtcagagaacaatgagtatgagcgt
gcccggaggctgctcgccaaggcccggagcagtgcgcccacggcccgtgtgttcatgaag
tctgtgaagctggagtgggttctggggaacattgaggctgctcaagagctgtgtgaggag
gccttgaagcactatgaggactttcccaagctgtggatgatgaaggggcagattgaagag
caaggagagctgatggaaaaggctcgggaggcttacaaccagggcttgaagaagtgcccc
cactctacaccactctggctcttgctttcccggctcgaggagaaggttgggcagctgacc
cgcgctcgagccattttggagaagtctcgattgaagaacccaaagaaccctggactgtgg
ttggagtctgtgaggctggagttccgtgccgggctgaagaacatcgccaacacactcatg
gccaaagccctccaggaatgtcccagctctggcattctgtggtcagaagccgtcttcctc
gaggcaagaccccagagaaagaccaagagtgtggatgccctgaagaagtgtgagcatgac
ccacatgtgctcctggccgtggccaagctgttctggagtgagcggaagatcaccaaggct
cgggagtggttccaccgcacagtgaaaatcgactctgacctgggggatgcctgggccttc
ttctacaagttcgagctgcagcatggcacggaggagcagcaggaggacgtgagaaagcgc
tgtgagaatgctgagccccgccatggagagctgtggtgcactgtgtccaaagatattgcc
aactggcagaagaagattggggaggtcctggtgctggtggctgcgcgcatcaagaacacc
ttctga
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