Dipodomys spectabilis (banner-tailed kangaroo rat): 122102888
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Entry
122102888 CDS
T07891
Symbol
Dhx8
Name
(RefSeq) ATP-dependent RNA helicase DHX8
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
dsp
Dipodomys spectabilis (banner-tailed kangaroo rat)
Pathway
dsp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dsp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122102888 (Dhx8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dsp03041
]
122102888 (Dhx8)
Enzymes [BR:
dsp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
122102888 (Dhx8)
Spliceosome [BR:
dsp03041
]
Complex C
Other components
Step II factors
122102888 (Dhx8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
Helicase_C
HA2_N
DEAD
AAA_22
GIPC1_GH2
AAA_19
nSTAND3
Flavi_DEAD
AAA_16
T2SSE
TsaE
PhoH
ABC_tran
Sigma54_activ_2
OB_RRP5_4th
Motif
Other DBs
NCBI-GeneID:
122102888
NCBI-ProteinID:
XP_042529472
LinkDB
All DBs
Position
Unknown
AA seq
1223 aa
AA seq
DB search
MAVAVATAGMLMASEPGPAEELAKLEYLSLVSKVCTELDNHLGINDKDLAEFVISLAEKN
TTFDTFKSSLVKNGAEFTDSLISNLLRLIQTMRPPAKPSTSKDPVKPKTEKEKLKELFPV
LCQPDNPSVRTMLDEDDVKVAVDVLKELEALMPSAAGQEKQRDTEHRDRTKKKKRSRSRD
RERDRDRERDRDRDRERDRDHKRRYRSRSRSHSRTRERNKGKSRYRSRSKSHSPLKDRKD
RDKYGERNLDRWRDKHVDRPPPEEPAIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHI
SELRREGRVANVADVVSKGQRVKVKVLSFTGTKTSLSMKDVDQETGEDLNPNRRRNLVGE
TNEETSMRNPDRPTHLSLVSAPEVEDDSLERKRLTRISDPEKWEIKQMIAANVLSKEEFP
DFDEETGILPKVDDDEDEDLEIELVEEEPPFLRGHTKQSMDMSPIKIVKNPDGSLSQAAM
MQSALAKERRELKQAQREAEMDSIPMGLNKHWVDPLPDAEGRQIAANMRGIGMMPNDIPE
WKKHAFGGNKASYGKKTQMSILEQRESLPIYKLKEQLVQAVHDNQILIVIGETGSGKTTQ
ITQYLAEAGYTSRGKIGCTQPRRVAAMSVAKRVSEEFGCCLGQEVGYTIRFEDCTSPETV
IKYMTDGMLLRECLIDPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTS
ATLDAVKFSQYFYEAPIFTIPGRTYPVEILYTKEPETDYLDASLITVMQIHLTEPPGDIL
VFLTGQEEIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFDPAPPGSRKVVI
ATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQRAGRAGRTGPG
KCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPMETLITA
MEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQNV
FYRPKDKQALADQKKAKFHQTEGDHLTLLAVYNSWKNNKFSNPWCYENFIQARSLRRAQD
IRKQMLGIMDRHKLDVVSCGKSTVRVQKAICSGFFRNAAKKDPQEGYRTLIDQQVVYIHP
SSALFNRQPEWVVYHELVLTTKEYMREVTTIDPRWLVEFAPAFFKVSDPTKLSKQKKQQR
LEPLYNRYEEPNAWRISRAFRRR
NT seq
3672 nt
NT seq
+upstream
nt +downstream
nt
atggctgtggccgtggccaccgcgggaatgctgatggcctcggagccaggccctgcggag
gagctcgccaaactcgaatatttgtctttggtatcgaaggtttgcacggaactggacaat
cacttagggatcaacgacaaggatctagctgaatttgtgatcagtcttgctgagaaaaat
accacttttgatacatttaagtcttcccttgtcaaaaatggagcagaattcacagattct
cttattagtaatctacttcgactcatacaaaccatgcgccctccagcaaagccttctact
agcaaagatccagttaaacccaaaacagaaaaagaaaagctgaaagaactcttcccggtc
ctttgccagccagacaatccatctgttcggaccatgctggatgaagatgatgtgaaggtt
gccgtggatgtcttaaaggaactggaagccttaatgcccagtgcagcaggccaagagaag
cagagagacacggaacaccgggacaggacaaagaaaaagaagcggagtcggagtcgagat
cgagaacgtgaccgagaccgagagcgagatcgagacagagacagagagcgagacagagac
cacaagcggagataccgatcccgctctcgatcacattccaggacccgagagagaaataaa
gggaagtctagatatcggtccaggagcaagagtcacagccccctcaaagaccgaaaggac
cgggataagtatggagagagaaatctggacagatggcgggataagcatgtggaccgccct
ccccctgaggagcctgccatcggggacatttacaatggcaaagttaccagcatcatgcag
tttggatgctttgtacagctggagggattaaggaagcggtgggaaggcctggtgcatatc
tctgagcttcggcgggaaggccgtgtggccaatgttgctgatgtggtgagcaaaggccag
agagtcaaagtcaaagtgctgtccttcactgggaccaagaccagcttgagcatgaaggat
gtagatcaagagacgggagaagatctaaacccaaatcgacggcgaaatttggttggggag
accaatgaggagacttcaatgcggaatccggacagacccactcacctctcccttgtcagt
gcccccgaagtagaggatgactctctggagcgcaagcgcctcacccgcatctctgaccca
gagaagtgggagatcaaacagatgattgctgctaatgtcctttccaaagaagagtttcca
gactttgatgaagagactggcatccttcctaaggtggatgatgatgaagatgaggacctt
gagattgaactggttgaggaagagcctccattcctgagaggtcacaccaagcaaagcatg
gacatgagccccatcaaaattgttaagaacccagatggttccctctcccaggctgccatg
atgcagagtgctttggccaaggaaaggcgggaactcaagcaagcccagcgggaagcggag
atggattctattcccatgggactcaacaaacactgggttgatcctttgcctgatgcggaa
ggcaggcagattgctgccaacatgaggggcattggaatgatgcccaatgacattcccgag
tggaagaagcatgcctttggaggcaacaaagcttcttatgggaaaaagacccagatgtcc
atcctcgagcagagggagagcctgcccatctataaactgaaagagcagctggtccaggct
gttcatgacaatcagatcctaattgttattggagagacaggatctgggaagacaacgcag
attacccagtacctagcagaggcaggctacacttccagaggcaagattgggtgtacacag
ccaagaagagtggcagccatgtccgtggccaaaagagtatcagaggaatttggttgttgt
ttaggtcaagaggtgggctatacaattcgatttgaggactgcaccagtcccgagacagtc
atcaagtacatgacagatggcatgttgctcagggaatgcctgattgaccctgacctcact
cagtacgccatcatcatgttggacgaggcccatgaaagaacaattcacacagacgtgctt
tttgggttgctgaaaaagacagttcagaaacggcaggacatgaagctgattgtcacttca
gctaccttggatgcagtgaagttttctcagtacttctatgaagcacctatcttcaccatc
ccaggccgaacttacccagtggaaatactgtacacaaaggaacctgagacagattacctg
gatgccagcctcattactgtcatgcagatccacttaactgagccaccaggtgatatcttg
gtcttcctgactggtcaggaagagattgatactgcttgtgagatcctatatgaaagaatg
aaatccttgggacctgatgttccagagttaattatccttccagtgtattctgctcttccc
agtgagatgcagacccggatctttgacccagctcctcctggcagcagaaaggtcgtgatt
gccaccaacattgcagaaacatcactgactatcgatggcatctactatgtggtggaccct
gggtttgtgaagcagaaagtttacaattctaagacagggattgaccagttggtggtgaca
cctatttctcaggctcaggctaagcaacgagctggcagagctgggagaacaggcccaggg
aagtgttacaggctgtacacagaacgtgcctaccgagatgaaatgctgaccaccaacgtg
ccagaaattcagagaaccaacttggcaagcaccgtactgtccctcaaggccatgggcatt
aatgacctgctgtcctttgactttatggatgccccaccaatggaaactctgatcacagcc
atggagcagctatatacactgggggccctggatgatgagggcctgcttactcgcctgggt
cgcaggatggcagagttccctctagaaccaatgctgtgcaaaatgctcatcatgtctgtg
catctaggctgcagtgaagaaatgctgaccattgtgtccatgctgtcagtgcagaatgtc
ttttacaggcccaaggataagcaagccctcgcagatcagaagaaggccaaattccaccag
actgaaggggaccatctcacccttctggctgtgtacaactcctggaaaaacaacaagttc
tccaacccatggtgctacgagaactttatccaggcccgttccctgcgccgggcccaggac
atccgtaagcagatgttaggcataatggacagacacaagctggatgtggtgtcctgtggc
aagtccacagtccgagtgcagaaggccatctgcagtgggttcttccgtaatgctgccaag
aaagacccgcaggagggctataggaccctgatcgaccagcaggtggtttacatccaccct
tccagtgcgctcttcaacagacagccagaatgggtggtgtatcatgaactggtgctgacc
acaaaggagtacatgcgtgaagtcaccaccattgacccccggtggctcgtggagtttgcc
ccagccttcttcaaggtctctgatccaaccaagctaagcaagcagaagaagcagcagaga
ctcgaacccctatacaaccgctacgaggagccaaatgcctggagaatatcccgggccttc
cggcgacgctga
DBGET
integrated database retrieval system
