Dipodomys spectabilis (banner-tailed kangaroo rat): 122103247
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Entry
122103247 CDS
T07891
Symbol
Prpf8
Name
(RefSeq) pre-mRNA-processing-splicing factor 8
KO
K12856
pre-mRNA-processing factor 8
Organism
dsp
Dipodomys spectabilis (banner-tailed kangaroo rat)
Pathway
dsp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dsp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122103247 (Prpf8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dsp03041
]
122103247 (Prpf8)
Spliceosome [BR:
dsp03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
122103247 (Prpf8)
Complex C
U5 SnRNP specific factors
122103247 (Prpf8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
122103247
NCBI-ProteinID:
XP_042529693
LinkDB
All DBs
Position
Unknown
AA seq
2335 aa
AA seq
DB search
MAGVFPYRGPGNPVPGPLAPLPDYMSEEKLQEKARKWQQLQAKRYAEKRKFGFVDAQKED
MPPEHVRKIIRDHGDMTNRKFRHDKRVYLGALKYMPHAVLKLLENMPMPWEQIRDVPVLY
HITGAISFVNEIPWVIEPVYISQWGSMWIMMRREKRDRRHFKRMRFPPFDDEEPPLDYAD
NILDVEPLEAIQLELDPEEDAPVLDWFYDHQPLRDSRKYVNGSTYQRWQFTLPMMSTLYR
LANQLLTDLVDDNYFYLFDLKAFFTSKALNMAIPGGPKFEPLVRDINLQDEDWNEFNDIN
KIIIRQPIRTEYKIAFPYLYNNLPHHVHLTWYHTPNVVFIKTEDPDLPAFYFDPLINPIS
HRHSVKSQEPLPDDDEEFELPEFVEPFLKDTPLYTDNTANGIALLWAPRPFNLRSGRTRR
ALDIPLVKNWYREHCPAGQPVKVRVSYQKLLKYYVLNALKHRPPKAQKKRYLFRSFKATK
FFQSTKLDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRF
GNAFHLCREVLRLTKLVVDSHVQYRLGNVDAFQLADGLQYIFAHVGQLTGMYRYKYKLMR
QIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAAGWRVWLFFMRGITPLLERWLGNLLARQF
EGRHSKGVAKTVTKQRVESHFDLELRAAVMHDILDMMPEGIKQNKARTILQHLSEAWRCW
KANIPWKVPGLPTPIENMILRYVKAKADWWTNTAHYNRERIRRGATVDKTVCKKNLGRLT
RLYLKAEQERQHNYLKDGPYITAEEAVAVYTTTVHWLESRRFSPIPFPPLSYKHDTKLLI
LALERLKEAYSVKSRLNQSQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIEFMD
LYSHLVPVYDVEPLEKITDAYLDQYLWYEADKRRLFPPWIKPADTEPPPLLVYKWCQGIN
NLQDVWETSEGECNVMLESRFEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVINYK
DMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAGPPQMPNDFLSFQDIATE
AAHPIRLFCRYIDRIHIFFRFTADEARDLIQRYLTEHPDPNNENIVGYNNKKCWPRDARM
RLMKHDVNLGRAVFWDIKNRLPRSVTTVQWENSFVSVYSKDNPNLLFNMCGFECRILPKC
RTSYEEFTHKDGVWNLQNEVTKERTAQCFLRVDDESMQRFHNRVRQILMASGSTTFTKIV
NKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK
ELGGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHEEDQLIPNLYRYIQPWESEFI
DSQRVWAEYALKRQEAIAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRT
DFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEG
LFWEKASGFEESMKWKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGI
FMHGKIPTLKISLIQIFRAHLWQKIHESIVMDLCQVFDQELDALEIETVQKETIHPRKSY
KMNSSCADILLFASYKWNVSRPSLLADSKDVMDSTTTQKYWIDIQLRWGDYDSHDIERYA
RAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHSAYGNWFPGSKPLIQQAMAKIMKANPAL
YVLRERIRKGLQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGNLTT
KPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQPKQ
IIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKVEKFGDLILKATEPQMVLFNLY
DDWLKTISSYTAFSRLILILRALHVNNDRAKVILKPDKTTITEPHHIWPTLTDEEWIKVE
VQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSQQRQQIAEIEKQTKEQSQLT
ATQTRTVNKHGDEIITSTTSNYETQTFSSKTEWRVRAISAANLHLRTNHIYVSSDDIKET
GYTYILPKNVLKKFICISDLRAQIAGYLYGVSPPDNPQVKEIRCIVMVPQWGTHQTVHLP
SQLPQHEYLKEMEPLGWIHTQPNESPQLSPQDVTTHAKIMADNPSWDGEKTIIITCSFTP
GSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPAQSSWN
YNFMGVRHDPNMKYELQLANPKEFYHEVHRPSHFLNFALLQEGEVYSADREDLYA
NT seq
7008 nt
NT seq
+upstream
nt +downstream
nt
atggccggagtatttccctaccgagggccgggtaatccggtgcccggccctctagccccg
ctgccggactacatgtcggaggagaagctgcaggaaaaagcccgaaaatggcagcagttg
caggccaaacgatatgcagaaaagcgcaagtttggatttgtggatgctcagaaggaagac
atgcccccagaacatgtaaggaagattattcgagatcacggagacatgaccaaccggaag
tttcgtcatgacaaaagagtctatttaggtgccctaaagtacatgcctcatgctgtcctc
aaactcctggaaaacatgcctatgccatgggagcagattcgggatgtgcctgtgctgtac
cacatcactggagccatttccttcgtcaatgagattccttgggtcattgaaccagtctac
atctcccagtgggggtcaatgtggattatgatgcgtcgagaaaaaagagacaggaggcat
ttcaaaaggatgcgtttccctccttttgatgatgaggaaccacccctggattatgctgac
aacatcctagatgttgagccactggaagccattcagcttgagctggaccctgaggaggat
gcccctgtattggactggttctatgaccaccagcccttgagagacagcaggaagtatgtt
aatggctccacttaccagcgttggcagttcacactgcctatgatgtctactctctaccgc
ctggctaatcagcttctaacagacttggtggatgacaactacttctatctgtttgatctg
aaggccttctttacttctaaggcactcaatatggccattcctggaggaccaaagtttgaa
cctcttgttcgagacatcaatttacaggatgaagactggaatgaattcaatgatattaat
aagataataattcggcagcctattcgaactgaatacaagattgcttttccttacctatac
aacaaccttccacaccatgtccatcttacctggtatcacactcctaatgttgtgttcatc
aagactgaggatcctgatttgccagctttctactttgatcctttgatcaatccaatctct
cacaggcactcggtcaagagccaggaaccattgccagacgatgatgaggagttcgagctc
ccagaatttgtggagccctttctgaaggacacacccctctacacagacaatacagccaat
ggcattgccctgctttgggccccacgacccttcaacctacgttctggtcgcacccgccgg
gccctggacatacctcttgtcaagaactggtatcgggagcattgtccagctggacagcct
gtgaaagtgcgagtctcctatcagaaattgcttaagtactatgtgctgaatgccttgaag
catcggcctcctaaggcccaaaagaagaggtatctgttccgctcctttaaggctaccaaa
ttctttcagtccacaaagctggactgggtggaggtgggcctgcaagtttgccgccaggga
tacaacatgcttaaccttctcattcatcgaaaaaatctcaactaccttcacctggactat
aacttcaacctcaagcccgttaagacactcaccaccaaggaaagaaagaaatctcgtttt
gggaatgcgtttcatctttgtcgggaagtactgcgattaactaagctggttgtggacagt
cacgtgcagtatcgcttgggcaatgtggatgctttccagctggcagatggactgcagtat
atatttgcccacgtggggcagctgacaggcatgtatcgatacaaatacaagttgatgcga
caaatccgcatgtgcaaggacctgaagcatctcatctattaccgcttcaacacgggccct
gtagggaagggccctggctgtggcttctgggctgctggctggcgagtctggctgtttttc
atgcgtggcattacccctttgctggaaagatggctgggcaacctcctggcccggcaattt
gaaggccgacattcaaagggggtagcaaagacagtgacaaagcagcgagtggaatcccat
tttgaccttgaacttcgggcagctgtgatgcatgatattctggacatgatgcctgaaggc
atcaaacagaacaaggcccggacaattctgcagcacctcagtgaagcctggcgctgctgg
aaggcaaacattccctggaaggtcccagggctgccaacacccatagagaatatgatcctt
cgatatgtgaaggccaaggctgactggtggactaacactgcccattacaacagagaacgg
attcgtcgtggggccactgtagacaagactgtttgcaaaaagaacttgggccgcctcacc
cgactgtacctgaaggcagaacaggagcggcagcacaattatctgaaggatgggccttac
atcacagcagaggaagcagtagcagtgtataccaccactgtacattggttggaaagtcgt
aggttctctcccatcccttttcccccactttcctacaagcatgataccaagttgcttatc
ttggctctggagcgactcaaggaagcttatagtgtcaagtctcggttgaaccagtcccag
agggaggagctaggtctgattgagcaagcttatgacaacccccatgaggcattgtcccgc
atcaagcgtcacctccttacacagagagcctttaaggaagtgggcattgagtttatggac
ctctatagccacctagtaccagtgtatgatgtagagccactggagaagataactgatgct
tacctggaccaatatctgtggtatgaagcagacaagcgacgccttttcccaccttggatc
aagcctgctgacacagaaccacctccactgcttgtttacaagtggtgccaaggtatcaat
aatcttcaggatgtatgggagaccagtgagggcgagtgtaatgttatgctggaatcacgc
tttgagaagatgtatgaaaagattgacttgaccctacttaataggctactgcgacttatt
gtggaccacaacatagctgactacatgacagctaagaacaatgttgtcatcaactataag
gacatgaaccatacaaattcatatggcatcatcagaggtttgcagtttgcctcattcata
gtgcagtactatggcttagtgatggatttgcttgtgttgggattgcaccgggccagtgag
atggctggaccccctcagatgccaaatgatttcctcagtttccaagacatagccactgag
gctgcccaccccatccgactcttctgtcgatacatcgatcgcatccatattttcttcagg
ttcacagcagatgaagctcgggacctgatccaacgttacttgacagagcatcctgacccc
aacaatgagaacattgttggatataataacaagaaatgctggccccgagatgctcgcatg
cgtctcatgaagcacgatgtcaacttgggtcgagcagtcttctgggacatcaagaaccgt
ctgccacgatcggtgaccacagttcagtgggagaacagctttgtgtctgtgtatagtaaa
gataaccccaacctgctgttcaacatgtgtggctttgagtgccgcatcctgcctaaatgc
cgtaccagctatgaggagttcactcacaaagatggagtctggaatctacagaatgaggta
accaaggagcgaacagcccaatgtttcctgcgtgtggatgatgagtcaatgcagcgcttc
cataatcgtgtgcgtcaaattttgatggcctctggatctaccaccttcacaaagattgtg
aataagtggaatacagctctcattggccttatgacatactttcgagaagctgtagtgaac
acccaggaactcctagacttgctggtaaagtgtgagaataagatccagacacgtatcaag
attggactcaactccaagatgccaagtcgatttcctcctgttgtgttctacactcctaag
gaattgggtggacttggcatgctttccatggggcatgtgctaatcccccagtctgacctc
aggtggtccaagcagacagatgtaggtattacacactttcgttcaggaatgagtcatgaa
gaagaccagctgattcccaacttataccgctacatacagccatgggagagtgaattcatt
gactctcagcgggtctgggctgaatatgcactcaagagacaagaggccattgctcagaac
agacgattgactttagaagatctagaagattcatgggatcgtggcattcctcgaatcaac
acccttttccagaaggaccggcatacattggcttatgataagggctggcgtgtcagaaca
gactttaagcagtaccaggttttgaaacagaaccctttctggtggacacaccagcggcat
gatggaaagctctggaacctaaacaattaccgtacagacatgatccaggccctgggtggt
gtagaaggcattctggagcacacactcttcaagggcacctacttccctacatgggaaggt
ctcttctgggagaaggccagtggctttgaggaatctatgaagtggaagaaactaactaat
gctcagcgatcaggattgaatcagattcccaatcgtagattcaccctttggtggtcccca
actataaatcgagccaatgtatatgtaggctttcaggtgcagctggacctgacaggtatc
ttcatgcatggcaaaatccctacactgaagatctccctcatccagatattccgagctcac
ttgtggcagaagatccatgagagcattgttatggatttgtgtcaggtgtttgaccaggaa
ctggatgcactggaaattgagactgtgcaaaaggagacaatccatcctcgaaagtcctat
aagatgaactcttcctgtgcagacatattactgtttgcctcctataaatggaatgtctcc
cggccttcattgctggctgattccaaggatgtgatggacagcaccactactcagaagtat
tggattgacattcaattgcgctggggggactatgattcccatgatatcgaacgctatgcc
agggccaagttcctggattataccacagacaacatgagtatttacccttcacccaccggt
gtgctcattgctattgacctggcttataatctgcacagtgcctacggaaactggttccca
ggtagcaagcctctcatacagcaggccatggccaagatcatgaaggcaaatcctgccttg
tatgtgttacgtgaacggattcgtaaggggctccaactctattcatctgagcccactgag
ccttatctgtcctctcagaactatggtgaactcttttccaaccagattatctggtttgtg
gatgacactaatgtctacagagtgactatccacaagacctttgaagggaacttgacaacc
aagcctatcaacggagccatctttatcttcaatccacgcacaggacaactgttcctcaag
ataatccacacatctgtgtgggctggacagaagcgtttagggcagttggccaagtggaag
acggctgaggaagtggctgccctgatccgatctctgcctgtggaggagcagcccaagcag
atcattgtcaccaggaagggcatgttagatccattggaggtacacttactggacttcccc
aacattgtgatcaaaggatcggagctccagctccccttccaggcttgtctcaaagtggaa
aagtttggggatctcatccttaaagccactgagccccagatggttctgttcaacctctat
gatgactggctcaagactatttcatcttatacggctttctcccgtctcatcctgattctg
cgggccctgcatgtgaacaatgaccgtgcaaaggtgatcctaaagccagataaaactact
attacagaaccccaccacatctggcctaccctgactgatgaggagtggatcaaggtggag
gtgcagctcaaggatcttattttggctgactacggcaagaaaaacaatgtgaatgtggca
tcactgacacagtcagaaattcgagatatcatcttgggtatggagatctcagctccatca
cagcagcggcagcagatagcagagattgagaagcagaccaaagaacagtcacagctgact
gcaacccagactcgcactgtcaacaagcatggtgacgagatcatcacctctaccaccagc
aactatgagactcagaccttctcatctaagactgaatggagggtcagggccatctctgct
gccaacctgcacctacggaccaatcacatttatgtttcctctgatgacatcaaggagact
ggctatacttatatccttccaaagaatgtgcttaagaagttcatctgcatatctgacctt
cgtgcccaaattgctggatacctgtatggggtgagcccaccagataacccccaggtaaag
gagatccgctgtatcgtaatggtaccacaatggggcactcaccagactgtgcatttacct
agccagctgccccagcatgagtacctcaaggagatggaacccttaggttggatccacaca
cagcccaatgaatccccccagctctcaccccaggatgtcactacccatgccaagatcatg
gctgacaacccatcttgggatggtgaaaagaccattattatcacttgcagcttcacacca
ggctcctgcacactgacagcctataagctgacccctagtggctatgaatggggacgccag
aacaccgacaaaggcaacaaccccaaaggttacctgccctcacattatgagagggtccag
atgctgctgtctgatcgcttcctcggcttcttcatggttcctgctcagtcctcatggaat
tataactttatgggtgtacggcatgatcccaacatgaagtatgaactgcagttggcaaac
cctaaagagttctaccatgaggtgcatagaccctcccatttcctcaactttgcgctcttg
caggagggtgaagtctattctgcagaccgtgaagatctctatgcctag
DBGET
integrated database retrieval system
