Dipodomys spectabilis (banner-tailed kangaroo rat): 122103391
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Entry
122103391 CDS
T07891
Symbol
Col1a1
Name
(RefSeq) collagen alpha-1(I) chain
KO
K06236
collagen type I alpha
Organism
dsp
Dipodomys spectabilis (banner-tailed kangaroo rat)
Pathway
dsp04151
PI3K-Akt signaling pathway
dsp04510
Focal adhesion
dsp04512
ECM-receptor interaction
dsp04611
Platelet activation
dsp04820
Cytoskeleton in muscle cells
dsp04926
Relaxin signaling pathway
dsp04933
AGE-RAGE signaling pathway in diabetic complications
dsp04974
Protein digestion and absorption
dsp05146
Amoebiasis
dsp05165
Human papillomavirus infection
dsp05205
Proteoglycans in cancer
dsp05415
Diabetic cardiomyopathy
Brite
KEGG Orthology (KO) [BR:
dsp00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
122103391 (Col1a1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
122103391 (Col1a1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
122103391 (Col1a1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
122103391 (Col1a1)
09150 Organismal Systems
09151 Immune system
04611 Platelet activation
122103391 (Col1a1)
09152 Endocrine system
04926 Relaxin signaling pathway
122103391 (Col1a1)
09154 Digestive system
04974 Protein digestion and absorption
122103391 (Col1a1)
09160 Human Diseases
09161 Cancer: overview
05205 Proteoglycans in cancer
122103391 (Col1a1)
09172 Infectious disease: viral
05165 Human papillomavirus infection
122103391 (Col1a1)
09174 Infectious disease: parasitic
05146 Amoebiasis
122103391 (Col1a1)
09166 Cardiovascular disease
05415 Diabetic cardiomyopathy
122103391 (Col1a1)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
122103391 (Col1a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
dsp00536
]
122103391 (Col1a1)
Glycosaminoglycan binding proteins [BR:
dsp00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
122103391 (Col1a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
122103391
NCBI-ProteinID:
XP_042529903
LinkDB
All DBs
Position
Unknown
AA seq
1462 aa
AA seq
DB search
MFSFVDLRLLLLLAATALQTHGQEADEVVRQHEDIPKISCIYDGIRHPNNQTWKPEPCLV
CICNNGTTVCDDVMCDNAFDCLEPQMIEGECCPVCVEHSVMPDQESLGVEGPKGDTGPRG
PRGPAGPPGRDGIPGKPGLPGIPGPPGPPGPPGLGGNFAPQMSYGYDEKSAGVSVPGPMG
PSGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPG
ERGPSGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMG
PRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEAGPQGARG
SEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQG
PSGAPGPKGNSGEPGAPGNKGDTGAKGETGPAGVQGPPGPAGEEGKRGARGEPGPAGLPG
PPGERGGPGSRGFPGADGVAGPKGPTGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTG
SPGSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPG
PPGAVGPAGKDGEAGAQGPPGPSGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKTGEQG
VPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGSNGAPGNDGAKGDTGAPGAPGSQG
APGLQGMPGERGAAGLPGPKGDRGDAGPKGADGSPGKDGVRGLTGPIGPPGPAGAPGDKG
ESGPSGPAGPTGARGAPGDRGEQGPPGPAGFAGPPGADGQPGAKGEPGDTGAKGDAGPPG
PAGPAGPPGPIGNVGAPGPKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPVG
KEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAGSPGTPGPQGIAGQRGVVG
LPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGSPGAEG
SPGRDGSPGPKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPIGPVG
ARGPAGPQGPRGDKGETGETGERGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRG
PPGSAGAAGKDGLNGLPGPIGPPGPRGRTGDAGPVGPPGPPGPPGPPGPPSGGFDFSFMP
QPPQEKAQDGGRYYRADDANVVRDRDLEVDTTLKSLSQQIENIRSPEGSRKNPARTCRDL
KMCHSDWKSGEYWIDPNQGCNLDAIKVFCNMETGETCVFPTQPTVAQKNWYLSKNPKEKK
HVWFGESMNGGFQFEYGSDGSDPADVAIQLTFLRLMSTEASQNITYHCKNSVAYMDKQTG
NLKKSLLLQGSNEIELRGEGNSRFTYSTLEDGCSSHTGTWGKTVIEYKTIKTSRLPIIDV
APLDIGAPDQEFGIDIGPACFV
NT seq
4389 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggacctccggctcctgctcctcttagcggccaccgccctccagacg
cacggccaagaggcagacgaagtcgtgcgccaacacgaagacatccccaaaatcagctgc
atatacgatggcatcaggcatcctaataaccaaacgtggaaacccgagccctgcctggtc
tgtatctgcaacaacggcaccacggtgtgtgacgatgtgatgtgcgacaacgcctttgac
tgtctggaaccccagatgattgagggcgagtgctgtcctgtctgtgtggaacactcggtc
atgccagaccaagaaagcctaggagtcgagggacccaagggagacactggcccccgaggc
ccacggggacctgccggccctcctggacgagatggcatccccggaaagcctggacttccc
ggaatccccggccctcctggacctcccggaccccctggccttggaggaaacttcgctcct
cagatgtcttatggttatgatgagaaatcagctggagtttccgtgcccggccccatgggt
ccctctggtcctcgtggtctccccggcccccctggtgcacctggtccccaaggttttcaa
ggaccccctggtgagcctggcgaacctggagcttcaggtcccatgggtccccgcggcccc
ccaggacctcctggcaagaacggagatgatggggaagctggcaaacctggccgtcctggt
gaacgtggaccttctgggcctcagggtgctcgaggattgcccggaacagctggccttcct
ggaatgaaaggacacagaggtttcagtggtctggatggtgctaagggagatgctggtcct
gctggtcccaagggtgaacctggcagccctggtgaaaatggagctcctggccagatgggt
ccccgtggtctgcctggtgagagaggtcgccctggagcccctggacctgctggtgcacgt
ggaaatgatggtgctactggtgcagctggacccccgggtcccactggccccgctggtcct
cctggctttcctggtgctgttggtgctaagggtgaagctggtccccaaggagctcgaggt
tctgaaggtccccagggtgtgcgtggtgagcccggcccccctggccctgctggtgctgct
ggtcctgctggaaaccctggtgctgatggacagcctggtgctaaaggtgccaacggagct
cctggtattgctggtgctcctggtttccccggtgcccgtggtccctctggaccccagggt
cccagcggcgctcccggtcccaagggtaacagcggtgaacctggtgctcccggaaacaaa
ggagacactggtgccaaaggagagactggccctgctggtgttcaaggaccccctggccct
gctggtgaagaaggaaagcgaggagcccgaggtgaacctggacctgctggcctgcctggg
ccccctggcgagcgtggagggcctggtagccgtggattccctggtgcagatggcgttgct
ggtcccaagggtcccactggcgaacgtggttctcctggccctgctggtcccaaaggttct
cctggtgaagctggtcgccctggagaagctggcctgcccggtgccaagggtctgactgga
agcccaggaagccctggtcctgatggaaaaactggtccccctggtcccgctggtcaagat
ggtcgccctggacccccaggtccccctggtgcccgtggtcaggctggtgtgatgggattc
cctggacctaaaggtgctgctggagaacccggaaaagctggagagcgaggtgtcccagga
ccccctggtgctgttggtcctgctggcaaagatggagaagctggagctcagggaccccca
ggcccttctggtcccgctggtgagagaggtgaacaaggccctgctggctcccccggattc
cagggtctccctggccccgctggtcctcctggcgaagcaggcaaaactggtgaacagggt
gttcctggagaccttggtgcccctggcccctctggagcaagaggcgagagaggtttccct
ggtgaacgtggtgtgcaaggtccccctggtcctgctggtccccgtggatccaacggtgct
cctggcaatgatggtgccaagggtgatactggtgcccctggagcccctggtagccaaggt
gcccctggtcttcaaggaatgcccggtgaacgtggtgcagctggtcttccaggccctaag
ggtgaccgaggtgatgctggtcccaaaggcgctgatggttctcctggcaaagatggcgtc
cgaggtctgactggccccattggtcctcccggccctgctggtgctcctggtgacaagggt
gaatctggtcccagcggccctgctggtcccactggagcccgcggtgcccccggtgaccgt
ggtgagcaaggaccccctggccctgctggcttcgctggcccccctggtgctgatggccaa
cccggtgctaaaggtgaacctggtgatactggtgctaaaggcgatgctggtcctcctggc
cctgccggccctgccggaccccctggtcccattggtaacgttggtgctcctggacccaaa
ggtgctcgtggcagtgctggtccccctggtgctactggttttcctggtgctgctggccga
gttggtccccccggcccctctggaaatgctggtcctcccggccctcctggccctgttggc
aaagaaggcggcaaaggtccccgtggtgagactggtcctgctggacgtcctggtgaagtt
ggtccccccggtcctcccggccctgctggcgagaaaggatctcctggtgccgatgggcct
gctggctctcctggtactcctggacctcagggtatcgctggacaacgtggtgtggttggt
ctgcctggtcagagaggagaaagaggcttcccaggtcttcctggcccctctggcgagccc
ggcaaacagggtccttccggagcaagtggtgaacggggtcctcctggtcccatggggccc
cctgggttagctggacctcctggtgaatctggacgtgagggatctcccggtgctgaaggc
tcccctggaagagatggctctcctggccccaagggcgaccgtggtgagactggccccgct
ggaccccctggcgctcctggtgctcccggtgcccctggtcctgttggccctgctggcaag
agtggcgatcgtggtgagactggtcccgccggtcctgctggacccatcggtcctgttggt
gcccgtggtcctgctggaccccaaggtccccgtggtgacaagggtgagactggcgaaact
ggcgaaagaggcataaagggtcaccgtggcttctctggtctccagggtccccctgggcct
cctggctcccctggtgaacaaggtccctccggagcttctggtcctgctggtcctcggggt
cctcctggctctgccggtgctgctggcaaagatggacttaatggtctccctggtcccatc
ggcccccctggtcctcgtggtcgcactggtgatgctggtcctgttggtccccctggccct
cctggaccccctggtccccctggtcctcccagcggtggtttcgacttcagcttcatgccc
cagccacctcaagagaaagctcaggatggtggccgctactaccgggctgacgatgccaat
gtggtgcgtgaccgtgaccttgaagtggacactaccctcaagagcctgagccagcagatt
gagaacatccgcagccccgaaggcagccgcaagaaccccgcccgcacctgccgcgacctc
aagatgtgccactctgactggaagagcggagagtactggatcgaccccaaccaaggctgc
aacctggatgccatcaaagtcttctgcaacatggaaactggagagacctgtgtgttcccc
actcagcccaccgtggcccagaagaactggtacctcagcaagaaccccaaggagaagaag
cacgtgtggttcggcgagagtatgaatggcggcttccagttcgaatatggcagcgacggc
tcagaccctgctgatgtggccatccagctgaccttcctgcgcctgatgtccactgaggcc
tcccagaacattacctaccactgcaagaacagcgtagcttacatggacaagcagaccggc
aacctcaagaagtccctactcctccagggctccaacgagatcgagctccgaggcgaaggc
aacagccgcttcacctacagcaccttagaggatggctgctcgagccacacgggaacctgg
ggcaagacagtcattgaatacaaaaccatcaagacctcccgcctgcccatcattgatgtg
gcacccttggacattggcgccccagaccaggaattcggaatcgacattggccctgcctgc
tttgtgtaa
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