Dipodomys spectabilis (banner-tailed kangaroo rat): 122103671
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Entry
122103671 CDS
T07891
Symbol
Scaf8
Name
(RefSeq) SR-related and CTD-associated factor 8 isoform X1
KO
K13191
RNA-binding protein 16
Organism
dsp
Dipodomys spectabilis (banner-tailed kangaroo rat)
Brite
KEGG Orthology (KO) [BR:
dsp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dsp03021
]
122103671 (Scaf8)
03041 Spliceosome [BR:
dsp03041
]
122103671 (Scaf8)
Transcription machinery [BR:
dsp03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
122103671 (Scaf8)
Spliceosome [BR:
dsp03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
122103671 (Scaf8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
RRM_1
Transformer
DUF3525
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
122103671
NCBI-ProteinID:
XP_042530211
LinkDB
All DBs
Position
Unknown
AA seq
1301 aa
AA seq
DB search
MEAVKTFNSELYSLNDYKPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKV
PGLYVIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNLYRCPGDDKSKIVRVLNLWQKN
NVFKSEIIQPLLDMAAGIPPPVVTPVLAGTAAMSNTPGTPVTPVTPANVVQGLPDPWVSQ
IANTDTLAAVAQILQSPQGQQLQQLIQTLQIQQQKPQPSILQALDAGLVVQLQALTAQLT
AAAAAASTLTPLDQGVSFNKKLMDRFDFGEDSEHSEEPKKDIPTPQLSHVSESVNNSIFH
QIAEQLQQQNIEHLRQQLLEQQPQKATPQDSQEGTFGSEHSASPSQGSSQQHFLEPEANL
DDSIDIQQQDMDIDEGQDAVEEEIFEQEAKKVAVRSRSRTHSRSRSRSPRKRRSRSRSGS
RKRKHRKRSRSRSRERKRKSSRSYSSERRAREREKERQKKGLPPIRSKTLSVCSTTLWVG
QVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYVCMVHRQDAFRALQKLSSGSYKIGSK
VIKIAWALNKGVKTEYKQFWDVDLGVTYIPWEKVKVDDLDGFAEGGMIDQETVNTEWETV
KSSEPVKETVQTTQSPTPVEKETVVTTQAEVFPPPVAMLQIPVAPAVPTVSLVPPTFPVS
MPVPPPGFSPIPPPPFLRASFNPSQPPPGFMPPPVPPPVVPPPAIPPVVPTLILQASEQT
FSNLGEPTSKIRPPKALIIKTLVQPPLSMAPETVKDVGFGSLVLPGGSVAGSLAPSALPA
GNVFNPPTKQAEPEDKVPHLIEHQISSGENTRPAIPNDIPTNAAILGGQPPNVTSNSGIL
GAQRPNVPSNSEILGVRPANVSSSSGIIGAQPPHILNHSGILGIQPPNVSSSSGLLGVLP
PGLPNSSGLGGIQPPSVTNTSGLLGTQPPAGPQNLPPLNIPSQRMPALPMLDIRPGLIPQ
APGPRFPLIQPGIPPQRGIPPPVVLDSALHPPPRGPFPPGDIFSHPERPFLAPGRQNVDH
VTNPDKRIPLGNDSVQQEGDRDYRFPPVESREGISRPPAMDVRDVVGRPIDPREGPGRPP
VDGRDHFGRPPIDIRENLVRPGIDHLGRRDHFAFTPEKPWGQRGDFDEREHRVLPVFGGP
KGLHEERGRFRAGTFRFDPRSGPWNRGFGQEVHRDFDDRRRPWERQRDRDDRDFDFCREM
NGNRLGRDRIQNTWVPPPHARVFDYFEGATSQRKVDNVPQVNGENTERHAQPPPLPVPVQ
NDPELYEKLTSSNEINKEKSDTVADVESEPVVVESTETEGT
NT seq
3906 nt
NT seq
+upstream
nt +downstream
nt
atggaggccgtgaagaccttcaacagcgagttgtattccttgaatgactataaaccaccc
atttctaaagcgaaaatgacccagattacaaaagcggccatcaaagctattaagttttat
aaacatgtggtccaaagtgttgagaaattcattcagaaatgcaagccagaatataaggta
ccaggactctatgttattgactccattgtgcgacagtcccgacatcagtttggtcaagaa
aaggatgtgtttgcacccagatttagtaataacatcattagcactttccagaatttatat
cgttgccctggggatgacaagagtaaaatagtgagagtattaaacttgtggcagaagaac
aatgtatttaagagtgagatcattcagccccttttggacatggcagctgggattcctccc
ccagttgtcacacctgtgttggccggtactgcagccatgagcaacactccaggaactcct
gtgacacctgttactccggccaatgtggttcagggcctgcctgacccttgggtatctcag
atcgcaaatacagatacacttgcagctgttgctcagatcttacaaagtcctcaaggccag
cagcttcagcagttaatacagaccttacagatacagcagcagaagcctcagccctccatc
ctgcaggcactggatgcgggacttgtggttcagttgcaggccctcactgcacagcttaca
gctgcagctgcagcggccagcactctgacccccttggatcaaggagtctctttcaataag
aagttgatggatagatttgattttggggaagactctgagcatagcgaagaacccaaaaag
gatatcccaactcctcaactttctcacgtttcagagtctgtgaacaattccatttttcat
cagattgcagagcagctgcaacagcaaaacattgaacatctcagacagcagctcctggag
cagcagcctcagaaggcaactccccaggatagtcaagaaggaacatttgggtcagagcat
tcggcatcaccatcacaaggaagcagccagcaacatttccttgaacctgaagcaaatttg
gatgattccatagatattcagcaacaggatatggatatagatgaagggcaagatgcagtg
gaagaggagatctttgaacaagaagctaagaaagtagctgttcgctcaagatcaagaact
cactcaagatctcgctcaagatcaccaagaaaacgaaggtccaggtcacgatctggttct
cgaaagcgtaagcacagaaagcgatcgcgctcccgctccagagaaaggaagaggaagtca
tcacgttcctactcaagtgaaaggagagccagagaaagagaaaaagaacggcagaaaaag
ggattacctccaattagatctaaaacattaagtgtatgtagtactactctctgggttggt
caggtggacaagaaggcaacacaacaagatttaactaacctttttgaagagtttggacaa
attgaatctattaatatgattcctcccaggggctgcgcttatgtatgtatggttcatcgg
caagatgcttttcgagctcttcagaaactgagttcagggtcctataaaattggttccaag
gtcattaagattgcttgggctctaaacaaaggtgtaaaaactgaatacaaacagttttgg
gatgtagatcttggagttacatatataccatgggaaaaagttaaagtggatgacttggac
ggttttgcagaaggaggcatgattgatcaggaaactgtaaatactgagtgggaaacggtg
aaaagttcagagccagttaaagagactgtccagaccacacagagtccaactccagttgaa
aaagagactgtggtcacaacgcaggcagaggttttccctccaccggttgccatgttgcag
attccagtagcacctgcagtgccgacagttagtttagtcccaccaacgtttcctgtgtca
atgcctgtgccccctcctggattcagtcctatccctccgcctccttttctgcgagcaagc
tttaacccttcacagccacctcctggtttcatgccacctccagtccctccacctgtggta
ccaccccctgcaatccctccagtagtaccaacattaattcttcaggcttctgaacaaacc
ttcagtaatttgggcgagcctacttcaaaaattagacccccaaaggcccttattataaag
actttagtgcaaccaccattgtccatggccccagaaactgtgaaagatgttggctttggt
agccttgttctgccaggtggttctgttgccggcagtctagctccttccgctctaccagct
ggaaatgtttttaatcctccaactaaacaagcagagcctgaagacaaagtacctcatctt
atagaacatcagatttcctctggtgaaaacaccagaccagcgattccaaatgatattcca
actaatgctgcgattttaggaggacagccacctaatgtgacgagtaattctggaattctg
ggagcccaaagaccaaatgtaccaagtaattctgaaattcttggggttcggccagcaaat
gtttccagcagttctgggattattggagcacaaccaccacatatcttaaatcattctgga
attttgggaatacagccaccaaatgtgtcgagtagttctggacttctgggtgtgctgcct
cctggtctgcctaacagttctggacttggaggaatacagccaccaagtgtcacaaatact
tccggacttttgggaacgcagccaccagctggacctcaaaacttgccccctctgaatatc
cctagtcaaaggatgcctgcattgccaatgttggacattcgtcccggactaataccacag
gcacctggaccaagattccctttaattcagcctggaattccgccccagcggggtatccct
cccccagtggtcctggactcagctcttcacccaccgccccggggaccttttcctccagga
gatattttcagtcatccagaaagaccttttctagcgcctggaagacaaaatgtagaccac
gttaccaatccagacaaaagaattccacttgggaatgacagtgttcaacaagaaggagat
cgagattaccggtttcctccggtagaaagcagggaaggcattagtaggcctcctgcaatg
gatgttagggatgtggttggacggcctatagatccaagagaaggtcctggaaggcctcca
gtagatggtagggatcattttggacgacctcctatagacataagggagaatcttgtaaga
ccaggtatagatcatcttggtcgaagagaccactttgcttttactccagagaagccttgg
gggcagagaggagattttgatgagagagagcatcgggttctccctgtttttggtggtcca
aaaggcttacatgaagaaagaggaaggtttcgggctggaacctttcgctttgatcctaga
agtggtccttggaaccgaggatttggacaagaagttcacagagattttgatgaccgcaga
agaccctgggaaaggcaaagggatagggacgacagagattttgatttctgcagagaaatg
aacggaaatcgtcttggacgtgatagaattcaaaacacttgggtcccccctcctcatgct
cgggtttttgattattttgaaggggccacttcccaacgtaaagttgataacgtgcctcag
gttaatggtgaaaatacagagagacatgctcagccaccgcctttgccagttccagtacag
aacgatcctgaactttatgaaaaactgacatcttcaaatgagataaacaaggagaagagt
gacacagttgctgatgtagaaagtgaaccagtggtggtagaaagcacagaaactgagggg
acataa
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