Dipodomys spectabilis (banner-tailed kangaroo rat): 122103675
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Entry
122103675 CDS
T07891
Symbol
Rc3h1
Name
(RefSeq) roquin-1 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
dsp
Dipodomys spectabilis (banner-tailed kangaroo rat)
Brite
KEGG Orthology (KO) [BR:
dsp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
dsp03000
]
122103675 (Rc3h1)
04121 Ubiquitin system [BR:
dsp04121
]
122103675 (Rc3h1)
Transcription factors [BR:
dsp03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
122103675 (Rc3h1)
Ubiquitin system [BR:
dsp04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
122103675 (Rc3h1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
Prok-RING_4
zf-CCCH
zf-C3HC4_3
zf-C3HC4
zf-CCCH_UNK
zf-C3HC4_2
FYVE
zf_CCCH_4
zf-CCCH_4
Vesi_VP2
PaaA_PaaC
Baculo_IE-1
zf-RING_4
zf-RING_6
zf-RING_10
Motif
Other DBs
NCBI-GeneID:
122103675
NCBI-ProteinID:
XP_042530180
LinkDB
All DBs
Position
Unknown
AA seq
1132 aa
AA seq
DB search
MPVQAPQWTDFLSCPICTQTFDETIRKPISLGCGHTVCKMCLNKLHRKACPFDQTTINTD
IELLPVNSALLQLVGAQVPEQQPITLCSGVEDTKHYEEAKKCVEELALYLKPLSSARGVG
LNSTTQSVLSRPMQRKLVTLVHCQLVEEEGRIRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEAGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ANIDPSPDAPPPSWEQLENGLVAVRTVVHGLVDYIQNHSKKGADQQQPPQHSKYKTYMCR
DMKQRGGCPRGASCTFAHSQEELEKFRKMNKRLIPRKLLSASLGQLNEVGLPSTAMLPDE
GAVDLPSRKPSALPNGIVSSGNAVTQLIPRGTDASYDSSLKPGKIDHLSSSAPGSPPDVL
ESVPKSISALPVNPHPIPSRGPADLPPMPITKPLQMVPRGSQLYPAQQADVYYQDPRGAA
PPFEPAPYQQGMYYTPPPQCVSRFVRPPPSAPEPGPPYLDHYSPYLQDRVVNSQYGTQPQ
QYPPMYPPHYDGRRVYPAQSYTREEIFRESPIPIEIPPAAVPSYVPESRERYQPVEGYYP
VAPHPTQIRPSYPREPPYSRLPPPSQPHPSLDELHRRRKEIMAQLEERKVISPPPFAPSP
TLPPTFHQEEFLDEELKVAGKYKGNDYSQYSPWSCDTIGSYIGTKDVKPKDVMAAGSVEM
MNLESKGMRDQRLDFQRRAVESSDDDLIPFGDRPTVSRFGAISRTSKTIYQGAGPIQAMA
PQGAPTKSINISDYSPYGTHGGWGGSPYSPHQNIPSQGHFSERERISISEVASHGKPLPS
AEREQLRLELQQLNHQISQQTQLRGLEAVSNRLVLQREANTLAGQPQPLPPPKWPGMISS
EQLSLELHQVEREIGKRTRELSMENQCSLDMKSKLNTSKQAENGQPEPQNKVPTEDLTLT
FSSDVPNGSALTQENISLLSNKTSSLNLSEDPEGGGDNNDSQRSGVTPSSAP
NT seq
3399 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtacaagctccacaatggacggatttcctctcctgcccaatttgcactcaaact
ttcgacgaaacaattcgaaagcccatcagtttgggctgtggccatactgtctgcaagatg
tgcctgaataaactccaccgcaaggcttgcccttttgaccagaccactatcaatacagac
attgagctcctccccgtgaactcagcattgctgcagctagtgggtgctcaggtccctgag
cagcaacccattactttgtgtagtggggttgaagatacaaagcattatgaggaggccaag
aagtgtgtagaagaattagcattgtacctgaaaccgctcagcagtgctagaggagtgggt
ctgaatagcactactcagagtgttctgagtcgcccaatgcagaggaagcttgtgacacta
gtccactgccaactagtggaagaagaaggcaggattcgtgctatgagggctgctcgatct
ttaggtgaacgaacagttacagagctcattctccagcatcaaaatcctcaacaactctct
tccaatctttgggcagcagtcagggctagaggctgccaattccttggaccagcaatgcag
gaagaagcacttaagctggttctactggctttggaagatggttctgctttgtcacggaaa
gtgttggttctttttgtggtgcaaaggttggagccacggtttcctcaagcttctaaaaca
agcattgggcatgttgttcaactcctttatagagcctcttgcttcaaggtcactaaacgt
gatgaagactcttctttgatgcagctgaaagaagaatttagaacatatgaagctctgagg
cgagaacatgactctcagatagtgcagattgctatggaagcaggtttaagaattgcacca
gatcagtggtcctctttgctttatggagaccagtctcacaaatctcatatgcagtccatt
attgacaagttgcagaccccagcctcttttgcacaaagtgttcaagaactaacaattgct
ctccagcggactggagatccagcaaacttgaaccgactaagaccccatttggaactgtta
gcaaacattgaccctagtccagatgctccgcctccttcttgggaacagctggaaaatggc
ctggttgctgtgcgtacagtggtacatggactggttgattacatccagaatcacagtaaa
aaaggagcagatcaacagcagcccccacagcatagcaaatataaaacctatatgtgtcga
gatatgaagcagagaggagggtgccctcggggtgccagctgtacattcgcacactcacaa
gaggaactggaaaaatttcgtaaaatgaacaaacgtctgattcccagaaaactcttgagt
gcctctttgggtcaacttaatgaggtggggctgccttcgacagcaatgcttccagatgaa
ggtgcagtggatcttcctagcaggaaaccctccgctctgccaaatggaattgtatcatca
gggaatgcagtaacacagctgattccacgtgggacagatgccagctatgattctagtctg
aaacctggaaagatagatcatctgagcagtagtgctcctggatcccctcctgatgtgctg
gaatctgtccctaagagtatttctgccttacctgtgaatccacatcctataccctcaaga
gggccagcagacttgcctcccatgcctatcaccaaaccacttcagatggtaccacggggt
tctcagttatatccagcacaacaggcagatgtttattatcaggatcctcgaggagctgca
ccaccatttgaaccagcaccttatcagcagggtatgtactatactccaccaccacaatgt
gtgtcccgttttgtccgacctccaccatctgctcctgaacctggtcctccctacttggat
cattattcaccctacctccaagatcgtgttgtaaactctcagtatggcacacaaccacaa
cagtacccacctatgtatccacctcactatgatggccgtcgagtataccctgctcagtct
tatacaagagaggagattttccgagaaagccccatacctattgagattccacctgcagca
gtaccatcctatgtaccagaatccagagaaagataccagcctgtggagggttactatcca
gtggctcctcatccaacccagatcagaccttcataccccagagaacctccatatagtcga
cttcctcctccttcacaaccccaccctagtctagatgagctacatcgaagaagaaaggaa
ataatggctcaactagaggaaagaaaagttatctctccacctccttttgcaccttcacca
acattgcctcccacattccatcaagaggaatttttggatgaagaattgaaagtagctggg
aaatacaaaggaaatgactatagccaatactctccttggtcatgtgataccatcggctcc
tacattggaaccaaagatgtaaaacccaaagatgttatggcagcagggagtgtggaaatg
atgaatttggaaagtaaaggtatgagagaccagcgattagattttcagagacgagcagta
gaaagcagtgatgatgacctcattccatttggagatcgaccaacagtatctcggtttggt
gccatctctcgaacttccaaaacaatatatcaaggtgctggcccaatacaggctatggca
cctcagggagctcccacaaaatctattaacatttcagattacagtccatatggaacccat
ggaggctggggaggttctccatattcacctcatcaaaacataccttctcagggacacttc
agtgagagggagagaatatccatatcagaagtggctagtcatgggaaaccccttccatct
gctgagagggagcaactacgactagaattgcagcaactgaaccatcagattagtcagcag
acccaacttcgtggacttgaggctgttagtaacaggctggtgttacaaagggaggcaaac
accttggcaggccagccacaacccctaccacctccaaaatggcctggaatgatctcaagt
gagcagctgagcttagaacttcaccaggtggagagagaaattgggaaaagaacccgggaa
ctaagtatggagaaccagtgctctctggacatgaaaagcaagttgaacacaagcaaacaa
gcagaaaatggacaaccagaaccccaaaacaaagttccaaccgaggatcttacattgaca
ttcagcagtgatgttccaaatggatcagccttgacacaagagaatatcagcctcctgtca
aacaagaccagctctttgaacctgtcagaagaccctgagggaggaggggataacaatgac
tcccagagatcaggagttactcccagttctgctccctaa
DBGET
integrated database retrieval system
