Dipodomys spectabilis (banner-tailed kangaroo rat): 122104558
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Entry
122104558 CDS
T07891
Symbol
Msh2
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
dsp
Dipodomys spectabilis (banner-tailed kangaroo rat)
Pathway
dsp01524
Platinum drug resistance
dsp03430
Mismatch repair
dsp05200
Pathways in cancer
dsp05210
Colorectal cancer
Brite
KEGG Orthology (KO) [BR:
dsp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
122104558 (Msh2)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
122104558 (Msh2)
09162 Cancer: specific types
05210 Colorectal cancer
122104558 (Msh2)
09176 Drug resistance: antineoplastic
01524 Platinum drug resistance
122104558 (Msh2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dsp03400
]
122104558 (Msh2)
DNA repair and recombination proteins [BR:
dsp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
122104558 (Msh2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_I
MutS_II
AAA_27
Motif
Other DBs
NCBI-GeneID:
122104558
NCBI-ProteinID:
XP_042531426
LinkDB
All DBs
Position
Unknown
AA seq
934 aa
AA seq
DB search
MAVQPKDTLQLEGAAEAGFVRFFEGMPEKPTTTVRLFDRGDFYTAHGEDALLAAREVFKT
QGVIKYLGPAGAKTLQSVVLSKMNFESFVKDLLLVRQYRVEVFKNRAGNKASKENDWYMA
FKASPGNLSQFEDILFGTNDMSTSIGVMGVKMSTVDGQRQVGVGYVDSLQRKLGLCEFPD
NDQLSNLESLLIQIGPKECILPGGEIAGDMGKLRQVIQRAGILITERKRADFSTKDICQD
LNRLLKSKKGEQMNSSVLPEMENQVAVSSLSAVIKFLELLSDDSNFGQFELTTFDFSQYM
KLDIAAVRALNLFQGSVEDTTGSQSLAALLNKCKTPQGQRLVNQWIKQPLMDKNRIEERL
DLVEAFVEDAELRQSLQEDLLRRFPDLNRLAKKFQRQAANLQDCYRLYQGINQLPNVIQA
LEKHEGRHQVLLLAVFVTPFIELRSDFSKFQEMIETTLDMDQVENHEFLVKPSFDPNLTE
LRDVMNDLEKKMQSTLKHAARDLGLDPGKQIKLDSNAQFGYYFRVTCKEEKVLRNNKNFT
TVDIQKNGVKFTNSELSSLNEEYTKSKTEYEEAQNAIVKEIVNISSGYIEPMQTLNDVLA
QLDAVVSFAHVSNGAPVPYVRPDILEKGEGRIVLKASRHACVEVQDEVAFIPNDVRFDKE
KQTFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAKISIVDCILARVGAGDSQLK
GVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMF
ATHFHELTALASQIPTVNNLHVTALTTEENLTMLYQVKKGVCDQSFGIHVAELANFPKHV
IECAKQKALELEEFQNIGASQGRGEMEPAAKKCYLEREQGERIIQEFLSKVKQVPFTEMS
EENITTKLKQLKAELIAKNNSFVNELISRIKLTT
NT seq
2805 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcagccgaaggacacgctgcagctggagggtgcggccgaggccggcttcgtg
cgcttcttcgagggcatgcccgagaagccgaccaccacggtgcgcctcttcgaccggggc
gacttctacacggcgcacggcgaggacgcgctgctggcagcccgcgaggtgttcaagacc
cagggggtgatcaagtacctggggccggcaggagcaaagactctgcagagtgttgtgctt
agtaaaatgaattttgagtcttttgtaaaagatcttcttctggttcgtcagtatagagtt
gaagttttcaagaatagagctggaaataaagcatccaaggagaatgattggtatatggca
tttaaggcttctcctggcaatctgtcccagtttgaagatattctctttggtaccaatgac
atgtcaacttccattggtgttatgggtgttaaaatgtcaacagttgatggtcaaagacag
gttggagttgggtatgttgattccctgcagaggaagctaggactgtgtgagtttcctgat
aatgatcagctctccaatcttgagtctcttctgattcagattggaccaaaagaatgtatt
ttaccaggaggagagattgctggagacatggggaaactgagacaggttattcagagagca
ggaattctgatcacagaaagaaaaagagctgatttttccacaaaagacatttgtcaggac
ctgaatcggttattgaaaagcaaaaagggagaacagatgaatagttctgtcttgccagaa
atggagaatcaggttgcagtttcatcattgtctgcagtaatcaagtttttagagctttta
tctgatgattcaaattttggacagtttgaactgactacttttgacttcagccagtatatg
aaattggatattgcagcagttagagcccttaaccttttccagggttctgttgaggataca
actggctctcagtctctggctgcattgctgaataaatgcaaaaccccgcaagggcaaaga
ctagttaaccagtggattaagcagcctctcatggataagaacagaatagaagagagatta
gatttagtggaagcttttgtagaagatgcagagttaaggcagagtttacaagaagatttg
cttcgtcgattcccagatcttaacagacttgccaagaaatttcaaagacaagcagcaaac
ttacaagattgttaccgactttatcaggggataaatcaactccctaatgttatacaggct
ctggaaaaacatgaaggaagacaccaggtgttgttgttggcagtttttgtgactccattt
attgagcttcgttctgatttctccaaatttcaggaaatgatagaaacaactttagatatg
gaccaggttgagaaccatgaatttcttgtaaaaccttcatttgatcctaatctgactgaa
ttaagagacgtaatgaatgacttagaaaagaagatgcagtccacattaaaacatgcagcc
agagatctgggattggaccctggcaaacagattaaattggattccaatgcacagtttgga
tattattttcgtgtaacctgcaaggaagaaaaagtccttcgtaacaataaaaactttact
acagtagatatccagaagaatggtgttaaatttaccaacagtgaactgtcttctttaaat
gaagaatatactaaaagtaaaacagagtatgaagaggcccagaatgccattgtaaaagaa
attgtcaatatttcttcaggttatatagaaccaatgcagacactcaatgatgtgctagct
cagttagacgctgttgtcagctttgctcatgtttcaaatggagcacctgttccgtatgtt
cgaccagatattttggagaaaggagaaggaagaattgtattgaaagcatccagacatgct
tgtgttgaagttcaagatgaagttgcatttattcctaatgatgtacgctttgataaggaa
aaacagacgttccacatcattactggacccaatatgggaggtaaatcaacatatatccgc
caaactggagtaatagtactcatggcccaaattgggtgtttcgtgccatgtgaatcagca
aaaatatccattgtagattgcatcttggctcgagtcggggctggtgacagtcagttgaaa
ggagtctccacgtttatggctgaaatgctagaaacggcttctatcctcaggtctgcaacc
aaagattctttaataatcatagatgaattgggaagaggaacctctacttatgatgggttt
ggcttggcctgggctatatcagagtacattgcaacaaagattggtgctttttgcatgttt
gcaacccattttcatgaacttactgcattggccagccagataccaactgtgaataatcta
catgtgacagcattaaccactgaagagaatttaacaatgctttatcaggtcaagaaaggt
gtctgtgaccaaagttttggaattcatgttgcagagcttgctaattttcccaagcatgta
atagaatgtgccaaacaaaaagccctggaactcgaggagtttcagaatattggagcttca
caaggacgtggtgaaatggaaccagcagcaaagaagtgctatctggaaagagagcaaggt
gaaagaattatccaggagtttctatccaaggtgaaacaagtaccctttactgaaatgtca
gaagaaaacatcacaacaaagctaaaacagctgaaagctgagttgatagccaagaataat
agctttgtaaatgaactcatttcacgaataaagcttactacgtga
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