Dipodomys spectabilis (banner-tailed kangaroo rat): 122104577
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Entry
122104577 CDS
T07891
Symbol
Msh6
Name
(RefSeq) DNA mismatch repair protein Msh6
KO
K08737
DNA mismatch repair protein MSH6
Organism
dsp
Dipodomys spectabilis (banner-tailed kangaroo rat)
Pathway
dsp01524
Platinum drug resistance
dsp03430
Mismatch repair
dsp05200
Pathways in cancer
dsp05210
Colorectal cancer
Brite
KEGG Orthology (KO) [BR:
dsp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
122104577 (Msh6)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
122104577 (Msh6)
09162 Cancer: specific types
05210 Colorectal cancer
122104577 (Msh6)
09176 Drug resistance: antineoplastic
01524 Platinum drug resistance
122104577 (Msh6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dsp03400
]
122104577 (Msh6)
DNA repair and recombination proteins [BR:
dsp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
122104577 (Msh6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
MUM1-like_PWWP
UPF0524
Motif
Other DBs
NCBI-GeneID:
122104577
NCBI-ProteinID:
XP_042531452
LinkDB
All DBs
Position
Unknown
AA seq
1377 aa
AA seq
DB search
MSRQSTLYSFFPKSPALNNAKKAGASREGRRAAAAAGASPPLSGDAARSEAGPEPGPQAV
ESSPPEAKNLNGRLRSSAAPAAPTSSSCDFSPGDLVWAKMEGYPWWPCLVYNHPFDGTFI
REKGKSVRVHVQFFDDSPTRGWVSKRLLKPYTGSKSQEAQKGGHFYSSKSEILRAMQRAD
EALNKDKIKRLEMAVCDEPSESEEEEETEVGATYASDNSEEKDSEAEMQPQKQGPRRSSR
QVKKLRVISDSESDGDSDVEFKPSTKEEASSDEMSSGMGDSESDGLSSPVKVAPKRKRMV
TGSSTFKRKSSKETPAKVSKEMPAKVPKETSAKVSKETPATTKCITGILGNKTTLSAFSA
LQNSEPHVHVSLGDDNSPPTIWYHESLEWLKKENRRDERRRRPDHPDFDASTLYVPEDFL
NSCTPGMRKWWQIKSQNFDLVIFYKVGKFYELYHMDAVLGVSELGLVFMKGSWAHSGFPE
IAFGRYSDSLVQKGYKVARVEQTETPEMMEARCRKMAHISKFDRVVRREICRIITKGTQT
YSVLEGEPSENYSKYLLSLKEKAEDFSGHSRVYGVCFVDTTLGKFFIGQFSDDRHCSRFR
TLVAHYPPVQVLFEKGNLSVETKTVLKGSLSSSLQEGLVPGSQFWDATKTLRILLEEGYF
TEKISEGSGVALPQVLKGMTSESDSIGLTPGEKSELALSALGGCVFYLKKCCIDHELLSM
ANFEEYIPLDSNMVSTTKPGAIFTKANQRMVLDAVTLNNLEIFLNGTNGSTEGTLIERID
TCHTPFGKRLLKQWLCAPLCSPFAISDRLDAIEDLMVLPDKISEVAELLKKLPDLERLLS
KIHNVGFPLKNHNHPDSRAIMYEETTYSKKKIIDFLSTLEGFKVMCKIIEIMGEVTEGFK
SKILKQIVTLQAKSPEGRFPDLTAELNRWDTAFDHEKARKTGLIIPKAGFDADYDQALAD
IRENEQSLLEYLEKQRTRMGCRSIVYWGIGRNRYQLEIPENFTTRNLPEEYELKSTKKGC
KRYWTKTIEKKLANLINAEERRDTSLKDCMRRLFYNFDKNYKDWQSAVECIAVLDVLLCL
ANYSQGGDGPMCRPVILLPGEDTLPFLELKGSRHPCITKTFFGDDFIPNDILIACGEEEE
NSKAFCVLVTGPNMGGKSTLIRQAGLLTVLAQLGCYVPAEVCRLTPVDRVFTRLGASDRI
MSGESTFFVELSETASILTHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRT
LFSTHYHSLVEDYSKNVSVRLGHMACMVENESEDPSQETITFLYKFIKGACPKSYGFNAA
KLANLPEEVIQKGHRKAREFEKMNQSLRLFREVCLVSERSTIDAEAVHKLLTLIKEL
NT seq
4134 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcgacagagcaccctgtatagcttcttccccaagtctccggcgctgaataatgcc
aagaaggccggggcctctagggaaggtcgccgcgccgccgccgccgctggggcctcccct
cccctcagcggggatgcggcccggagcgaggctgggcctgagcccgggccacaggcagtc
gagtcgtcgccgccggaagcaaagaatctcaatggaaggctgcggagctcggctgcacct
gcagccccgaccagcagttcctgtgacttctcaccaggtgatttagtttgggccaagatg
gagggttacccctggtggccttgcttggtttacaatcatccctttgatggaacattcatc
cgggagaaagggaaatcagtccgtgttcatgtgcagttttttgatgacagcccaacaagg
ggctgggtcagcaaaaggctattaaagccatatacaggttcaaaatcacaggaagcccaa
aagggtggccatttttatagttcaaagtctgaaatactcagagcaatgcaacgagcagat
gaagccctaaataaagacaagattaagaggcttgaaatggcagtgtgtgatgaaccctca
gagtcagaagaagaggaagagacagaggtaggtgcaacttatgcatcagataacagtgaa
gaaaaggacagtgaagctgaaatgcagcctcagaaacaaggacctaggagaagtagccgg
caagtaaaaaaactaagggtcatatcagactcagagagtgatggtgactctgatgtggaa
ttcaagcccagtactaaggaggaagctagcagtgatgaaatgagcagtggaatgggggat
agtgagagtgacggtctgagcagccctgtcaaagttgctccaaaacggaaaagaatggtg
actggaagcagtacttttaaaaggaaaagttcaaaggagacacctgcaaaagtttcaaag
gagatgcccgcaaaagttccaaaggagacatctgcaaaagtttcgaaggaaacacccgca
accaccaaatgcataactggaattttgggaaacaagaccacgttgagtgctttttctgcc
cttcaaaattctgaaccccacgtccatgttagtctaggtgatgacaacagcccccctact
atctggtatcatgaatctttagaatggcttaagaaggaaaatagaagagatgagcgcagg
aggcggcctgatcacccagattttgatgcatctaccctctatgtgcctgaagattttctt
aattcctgtactcctgggatgaggaagtggtggcagattaagtctcaaaattttgatctt
gtcatcttttacaaggtggggaagttctatgaactataccatatggatgctgttcttgga
gtcagtgaactggggctggtgttcatgaaaggcagttgggctcattctggttttcctgaa
atagcatttggccgatactcagattccttggtgcagaagggctataaagtagcacgagtg
gaacagactgaaactccagaaatgatggaagcaagatgtcggaagatggcacatatatct
aagtttgatagggtggtaaggagggaaatttgtaggatcataaccaagggtacacagact
tacagtgtgctggaaggtgagccctctgagaactacagtaagtatcttcttagcctcaaa
gaaaaagcagaagatttttctggccatagtcgtgtatatggcgtatgctttgttgatact
acactgggcaagtttttcataggtcagttttcagatgatcgccattgttccagatttagg
actctggtagcacattatcctccagtacaagtcttgtttgaaaaagggaatctttcagta
gaaactaagacagttctgaagggttcattatcatcttcccttcaggaaggtctggtacct
ggctcccaattttgggatgcaactaaaactttgagaatactgcttgaagaagggtatttt
actgaaaagatcagtgaaggcagtggagttgcattaccccaggtgcttaaaggtatgacc
tcagagtcagattccattggattgacaccaggagagaaaagtgaattggccctctctgct
ctaggtggttgtgtcttctacctcaaaaaatgctgtattgatcacgaacttttatccatg
gctaactttgaagagtatattcctttggattccaacatggttagtactacaaaaccaggt
gctatttttactaaagccaatcaacgtatggtgctagatgcagtgacattaaacaacttg
gagattttcctgaatgggacgaatggttctactgaggggaccctgatagaaaggatcgat
acctgtcatactccctttggaaagcggcttctgaaacaatggctttgtgccccgctctgt
agcccttttgccatcagtgatcgcctagatgccatagaagacctcatggtactccctgac
aaaatctctgaagttgcagaacttctaaaaaagcttccagatcttgagaggctcctgagt
aaaattcataatgttggatttcccttaaaaaaccacaaccacccagatagcagggctata
atgtatgaagaaaccacatatagtaaaaaaaagataattgattttctttcgactctggaa
ggattcaaagtaatgtgtaaaattatagagattatgggagaagtaactgaaggttttaag
tccaaaatccttaagcagatagtgactctacaggcaaaaagtcccgaaggtcgttttcct
gacttgactgcagaactgaaccgatgggatacagcctttgaccatgaaaaggctagaaag
actggattgatcattcccaaagcaggatttgacgctgattatgaccaagcactggccgac
ataagagaaaatgaacagagcctcctggagtacttagagaaacagcgcactcgaatgggc
tgtaggagcattgtttattgggggattggtaggaaccgttaccagttggaaattccagag
aatttcactactcgtaatctgccagaagaatatgaattgaaatctaccaagaaaggttgt
aaacgatactggaccaaaactattgagaaaaagttggctaatctgataaatgctgaagaa
cgtagagacacatcgctaaaggactgtatgcggcgactattctataactttgataaaaat
tataaggactggcaatctgctgtagaatgcattgcagtgttggatgttttactgtgccta
gctaactatagtcaagggggtgatggtcctatgtgtcgcccagtaattctgttaccagga
gaagacactctcccattcttagagcttaaaggatcacgacatccctgcattacgaagaca
ttttttggagatgattttattcctaatgatattctaatagcctgtggggaagaggaggaa
aatagcaaagccttttgtgtgcttgttactggaccgaatatgggagggaagtccacactt
ataagacaggctggtctgttaactgtactggctcagttgggttgttatgtacctgctgaa
gtatgtaggctcacaccagttgatcgggtgtttactagacttggtgcctcagatagaata
atgtcaggtgaaagtacattttttgttgaattgagtgaaactgccagcattcttacgcat
gcaacagcacattctcttgtgcttgtggatgaattaggaagaggtactgcaacatttgat
gggacagcaatagcaaatgcagttgttaaagaacttgctgagaccataaagtgtcgtaca
ttgttttctacccattaccattcattagtagaagattattctaaaaatgtttctgtgcgc
ctaggacatatggcatgcatggtagaaaacgaaagtgaagatcccagccaggagaccatt
actttcctgtataagttcattaaaggagcttgtcctaagagctatggctttaatgcagca
aaacttgcaaatctcccagaggaagttattcagaagggacatagaaaagcaagagaattt
gagaagatgaatcagtcactacggttatttcgggaagtttgcctggttagtgaaaggtca
actatagatgctgaagctgtccataagttgctgactttgattaaggaattatag
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