KEGG   Dipodomys spectabilis (banner-tailed kangaroo rat): 122104883
Entry
122104883         CDS       T07891                                 
Symbol
Ddb1
Name
(RefSeq) DNA damage-binding protein 1
  KO
K10610  DNA damage-binding protein 1
Organism
dsp  Dipodomys spectabilis (banner-tailed kangaroo rat)
Pathway
dsp03420  Nucleotide excision repair
dsp04120  Ubiquitin mediated proteolysis
dsp05161  Hepatitis B
dsp05170  Human immunodeficiency virus 1 infection
dsp05203  Viral carcinogenesis
Brite
KEGG Orthology (KO) [BR:dsp00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    122104883 (Ddb1)
  09124 Replication and repair
   03420 Nucleotide excision repair
    122104883 (Ddb1)
 09160 Human Diseases
  09161 Cancer: overview
   05203 Viral carcinogenesis
    122104883 (Ddb1)
  09172 Infectious disease: viral
   05170 Human immunodeficiency virus 1 infection
    122104883 (Ddb1)
   05161 Hepatitis B
    122104883 (Ddb1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:dsp04121]
    122104883 (Ddb1)
   03400 DNA repair and recombination proteins [BR:dsp03400]
    122104883 (Ddb1)
Ubiquitin system [BR:dsp04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Adoptor protein
     122104883 (Ddb1)
DNA repair and recombination proteins [BR:dsp03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      122104883 (Ddb1)
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      122104883 (Ddb1)
SSDB
Motif
Pfam: CPSF_A Beta-prop_RSE1_1st Beta-prop_RSE1_2nd Beta-prop_RIG_2nd
Other DBs
NCBI-GeneID: 122104883
NCBI-ProteinID: XP_042531796
LinkDB
Position
Unknown
AA seq 1140 aa
MSYNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGK
IAVMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGI
IGIIDPECRMIGLRLYDGLFKVIPLDRDNKELKAFNIRLEELHVIDVKFLYGCQAPTICF
VYQDPQGRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYH
NGDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDL
RVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIV
DMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPSRE
TDDTLVLSFVGQTRVLMLNGEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLVS
QEPKALVSEWKEPQGKNISVASCNSSQVVVAVGRALYYLQIHPQELRQISHTEMEHEVAC
LDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSH
YLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIY
SSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYES
PRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHET
SFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEE
AEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTEKELR
TECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEIL
DDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGET
STPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTER
KTEPATGFIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKREATADDLIKVVEELTRIH
NT seq 3423 nt   +upstreamnt  +downstreamnt
atgtcgtacaactatgtggtaacggcacagaaacccaccgccgtgaacggctgcgtgacc
ggacattttacttcagcagaagacttgaatctgttgattgccaaaaacacaagattagag
atctatgtggtcactgcagaggggcttcggccagtcaaagaggtgggcatgtatgggaag
attgcagtcatggagcttttcaggcccaagggggagagcaaggatctgctgtttatcttg
acagctaagtataatgcctgcatcttggagtataagcagagtggagagagcattgatatc
attacacgagcccatggcaatgtccaggatcgtattggccgcccctcagaaactggcatt
attggcatcattgaccctgagtgccggatgattggcctgcgactctatgatggtcttttc
aaagttattccactggaccgtgacaataaagagctcaaggcatttaacatccgcctggag
gaattgcatgtcatcgatgtcaagttcttgtatggttgtcaagcacctaccatatgcttt
gtctaccaggaccctcaggggcggcatgtaaaaacctatgaggtgtctcttcgagaaaag
gaattcaataaaggcccttggaaacaggaaaatgtagaagctgaggcttccatggtgatt
gcagtcccagaaccctttggaggggccatcatcattggacaggagtccatcacctatcat
aatggtgacaaatacctggcgattgcacctcctatcatcaagcaaagcacaattgtgtgc
cacaatcgtgtggaccctaatggttccagatacctgctgggagacatggaaggacggctt
ttcatgctgctgttggagaaggaggagcaaatggatggcactgtcacactcaaggatctc
cgtgtagaactcctcggagagacctccattgccgagtgcctgacttacctggataatggg
gtggtgtttgttgggtctcgccttggtgactcccagcttgtgaagctcaatgttgatagc
aatgagcaaggctcctatgttgtggccatggaaacctttaccaatttaggacccattgtg
gatatgtgtgtggtggatctggagagacaggggcaggggcagctggtcacttgctctggg
gccttcaaggaaggttccttgaggatcatccggaatggaattggaatccatgagcatgcc
agcattgacttaccaggcatcaaaggcttatggccactgcgatctgaccccagccgtgag
acggatgacactttggtgctctcttttgtgggccagaccagagtcctcatgctaaatgga
gaggaggtggaggaaactgaactgatgggttttgttgatgatcagcagactttcttctgt
ggaaatgtggctcatcagcaacttatacagatcacatcagcatctgtgaggctggtctct
caagagcccaaagctctggtcagtgagtggaaggaaccccagggcaagaacattagcgta
gcctcctgcaacagcagtcaggtggtggttgctgtaggaagagccctctactacctgcag
atccatccccaggagctacggcagatcagccacacagagatggaacatgaagtggcctgc
ctagacatcactccattaggagatagcaatggtttatccccactttgtgccattggcctc
tggacagacatctcagcccgtatcttaaagctgccatcttttgaactgctgcacaaggag
atgctgggtggagagatcattcctcgttccatccttatgaccacttttgagagtagccac
tacttactttgtgccttgggagatggtgccctattctactttgggctcaatattgagaca
ggcttgttgagtgatcgtaagaaggtgaccttgggcacgcagcccacagtattgaggact
ttccgttctctctctaccaccaacgtgtttgcttgctctgaccgccccactgtcatctat
agcagcaaccacaagttggtcttctccaatgtcaacctcaaggaggtgaactacatgtgt
cctctcaactcagatggctatcctgacagcctggcactggccaacaatagcaccctcacc
attggcaccattgatgagattcagaagctgcacattcgaacagttcccctgtatgagtct
ccgaggaagatctgttatcaggaggtgtcccagtgcttcggggtcctctccagccgcatt
gaagtccaagacacaagtggaggcacaactgctctgaggcccagcgccagtacccaggct
ctgtccagtagtgtcagttccagcaagctgttctccagcagcaccgctcctcatgagacc
tcctttggagaagaggtggaggtgcacaacctcctcatcattgaccagcatacctttgaa
gtgcttcatgcacaccagtttctacagaacgaatatgctctcagcctggtctcctgcaag
ttgggcaaagaccccaatacatacttcattgtgggtacagctatggtgtatcctgaagag
gcagagccaaagcagggtcgcattgtggtcttccagtattcggatggaaaactacagact
gtggctgaaaaggaagtgaaaggtgctgtgtattctatggtggagtttaacgggaagctc
cttgccagcatcaacagcacggtacggctgtatgagtggaccacagagaaggagctccgc
accgagtgcaatcattacaacaacatcatggccctctacctgaagaccaagggtgacttc
atccttgtaggtgacctcatgcgctcagtgctgctgcttgcctacaagcccatggaggga
aactttgaagagattgcccgagattttaatcccaactggatgagtgcagtggaaatcttg
gatgatgacaatttcctgggggctgaaaatgccttcaacttgtttgtctgtcagaaggac
agtgctgctactactgacgaggaacggcagcacctacaagaggttgggctcttccatctg
ggcgaatttgtcaacgtcttctgccacggctctctggttatgcagaatctgggcgagact
tctacccctacacagggctcagtgctctttggcacagtcaatggcatgattgggctggtg
acctcactgtcagagagttggtacaacctcctgttggacatgcagaaccgactcaataaa
gtcatcaaaagtgtgggcaagatcgaacactccttctggagatcctttcacactgagcga
aagacagagccagctacaggcttcatcgatggtgacctgattgagagtttcttggatatt
agccgtcccaagatgcaagaggtcgtggcaaacctacagtatgatgatggcagtggtatg
aagcgagaggccacagctgacgacctcatcaaggttgtggaagagctcactcggatccat
tag

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