Dipodomys spectabilis (banner-tailed kangaroo rat): 122104902
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Entry
122104902 CDS
T07891
Symbol
Nxf1
Name
(RefSeq) nuclear RNA export factor 1
KO
K14284
nuclear RNA export factor
Organism
dsp
Dipodomys spectabilis (banner-tailed kangaroo rat)
Pathway
dsp03008
Ribosome biogenesis in eukaryotes
dsp03013
Nucleocytoplasmic transport
dsp03015
mRNA surveillance pathway
dsp05014
Amyotrophic lateral sclerosis
dsp05164
Influenza A
dsp05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
dsp00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
122104902 (Nxf1)
03015 mRNA surveillance pathway
122104902 (Nxf1)
03008 Ribosome biogenesis in eukaryotes
122104902 (Nxf1)
09160 Human Diseases
09172 Infectious disease: viral
05164 Influenza A
122104902 (Nxf1)
05168 Herpes simplex virus 1 infection
122104902 (Nxf1)
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
122104902 (Nxf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dsp03019
]
122104902 (Nxf1)
03009 Ribosome biogenesis [BR:
dsp03009
]
122104902 (Nxf1)
Messenger RNA biogenesis [BR:
dsp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
122104902 (Nxf1)
mRNA cycle factors
Stress granule specific factors
122104902 (Nxf1)
Ribosome biogenesis [BR:
dsp03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
122104902 (Nxf1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LRR_NXF1-5
NXF_NTF2
Tap-RNA_bind
TAP_C
NTF2
LRR_8
UBA_8
LRR_4
RRM_NXF1-2
Citrulline_exp
LRR_9
Motif
Other DBs
NCBI-GeneID:
122104902
NCBI-ProteinID:
XP_042531833
LinkDB
All DBs
Position
Unknown
AA seq
619 aa
AA seq
DB search
MADEGKSYNEHDDRVSFPQRRKKGRGPFRWKYGEGGNRRSGRGGSGIRTSRLEEDDGDVA
MSDAQDGPRVRYNPYATRPNRRGDTWHDRDRIHVTVRRDRAPPERGGAGTSQDGTSKNWF
KITIPYGRKYDKAWLLSMIQSKCSVPFTPIEFHYENTRAQFFVEDASTASALKAVNYKIQ
DRENRRISIIINSSAPPLTVQNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVA
QNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSG
NELKCERELDKIKGLKLEELWLDGNALCDTFRDQSTYISAIRERFPKLLRLDGHELPPPI
AFDVEAPTMLPPCKGSYFGTENLKSLVLHFLQQYYAIYDSGDRQGLLDAYHDGACCSLSI
PFIPQNPARSNLAEYFKDSRNVKKLKDPTLRFRLLKHTRLNVVAFLNELPKTQHDINSFV
VDISAQTSTLLCFSVNGVFKEVDGKSRDSLRAFTRTFIAVPASNSGLCIVNDELFVRNAS
PEEIQRAFAMPAPTPSSSPVPTLSPEQQEMLQAFSTQSGMNLEWSQKCLQDNNWDYTRSA
QAFTHLKAKGKIPEVAFMK
NT seq
1860 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgaggggaagtcgtacaacgagcatgatgaccgtgttagtttccctcagaga
agaaagaagggccggggtcctttccgttggaagtatggtgaaggagggaaccgtcgatct
ggaagaggcggttctggtattcgaacttcccgacttgaggaggatgatggagacgtggca
atgagtgatgcccaggatggtcctcgagttcgatacaacccctatgccacccgacctaac
cgtcggggtgatacttggcatgatcgggatcgaattcatgttactgtacgaagggacaga
gctcctccagagagaggaggggcgggcaccagccaagatgggacttcaaaaaactggttc
aagattacaattccttacggcagaaagtatgacaaggcatggctcctgagcatgattcag
agcaaatgcagtgtcccttttacccccattgagttccattatgagaacacacgggcccag
ttctttgtggaggacgccagtactgcttctgctttaaaggctgtcaactataagatccag
gatcgagagaaccgaaggatatctatcatcatcaattcctctgctccaccccttactgtt
cagaatgaattgaagcctgagcaagtagagcaactcaagctgattatgagcaaacgatat
gatggttcccagcaagctcttgacctcaagggtctccgttcagacccagatttggtggcc
caaaatattgacgttgtcctgaatcggagaagctgcatggcagctaccctacgaatcatt
gaagagaacatccccgagctattgtctttgaacttgagcaacaacaggctatatagactg
gatgacatgtccagcattgtacagaaggcacccaacctgaagatcctaaatctctccgga
aatgaattgaagtgtgagcgggagttggacaagataaaagggctgaagctagaagagttg
tggcttgatggaaatgccctgtgtgacacattccgagaccaatccacttacatcagcgcc
attcgcgaacgatttcccaagctattacgcctggatggccatgagttacccccaccaatt
gcctttgatgttgaagcccccacgatgttaccgccctgcaagggaagctatttcggaaca
gaaaacctgaagagtctggtcctgcacttcctgcagcagtactatgcaatttatgactct
ggagaccggcaggggctcttggatgcctaccatgatggggcctgctgctcactgagcatt
cctttcatcccccagaatcctgcccgaagcaacttggcagagtacttcaaggacagcaga
aatgtgaagaagctaaaagaccccaccctgcggttccgtctactgaagcatacacgtctc
aacgttgttgccttccttaatgagttgcccaaaactcagcatgacatcaattcctttgtg
gtagacataagtgcccagacaagtacattgctgtgtttttctgtcaatggggtcttcaaa
gaagtggatgggaaatctagggattctctgcgagcttttaccaggaccttcatcgctgtt
cctgccagcaattcagggctatgtattgtaaacgacgagctgtttgtgcggaatgccagc
cctgaagagatccaaagagccttcgccatgcctgcacccacaccttcctccagcccagtg
cccaccctgtccccggaacagcaggaaatgctgcaagcattctctacacagtctggcatg
aacctggagtggtcccagaagtgccttcaggacaacaactgggactatactagatctgcc
caggccttcactcatctcaaggccaagggtaagatcccagaagtggcattcatgaagtga
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