Dipodomys spectabilis (banner-tailed kangaroo rat): 122105065
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Entry
122105065 CDS
T07891
Symbol
Patl1
Name
(RefSeq) protein PAT1 homolog 1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
dsp
Dipodomys spectabilis (banner-tailed kangaroo rat)
Pathway
dsp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dsp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122105065 (Patl1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dsp03019
]
122105065 (Patl1)
Messenger RNA biogenesis [BR:
dsp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
122105065 (Patl1)
mRNA degradation factors
5'-3' decay
Decapping complex
122105065 (Patl1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
122105065
NCBI-ProteinID:
XP_042532100
LinkDB
All DBs
Position
Unknown
AA seq
770 aa
AA seq
DB search
MFRYESLEDCPLDEDDDAFQGLGEEDEEIDQFNDDTFGSGAVDDDWQEAHERLAELEEKL
PVAVNEQTGNGERDEMDLLGDHEENLAERLSKMVIENELEDPAIMRAVQTRPVLQPQPGS
LNSSIWDGSEVLRRIRGPLLAQEMPTVSVLEYALPQRLPQGPEDDRDLSERALPRRSTSP
VIGSPPVRAVPIGTPPKQMAVPSFNQQILCPKPVHVRPPMPPRYPAPYGERMSPNQLCGV
PNSSLLGHPFPPSVPPVFSPLQRAQLLGGAQLQPGRMSPSQFARVPGFVGSPLAAMNPKL
LQGRVGQMLPPAPGFRAFFNAPPTATPPPQQHPPGPGPHLQNLRSQAPMFRPDTTHLHPQ
HRRLLHQRQQQNRNQHRNLNGAGDRGSHRNSHQDHLRKDPYANLMLQREKDWVSKIQMMQ
LQSTDPYLDDFYYQNYFEKLEKLSAAEDMQGDGPKKERTKLITPQVARLEHAYKPVQFEG
SLGKLTVSSVNNPRKMIDAVVTSRSEDDETKEKQVRDKRRKTLVIIEKTYSLLLDVEDYE
RRYLLSLEEERPVLIEERKHKICSMYDNLRGKLPGQERPSDDHFVQIMCIRKGKRMVARI
LPFLSTEQAADILMTTARNLPFLIKKDAQDEVLPCLLSPFSLLLYHLPSVTVTSLLQQLM
NLPQSAAAPAPSNPHLTAVLQNKFGLSLLLVLLSRGEDLQNSDLATESTQNSQWTEMMFM
ATRELLQIPQAALAKPISIPTNLVSLFSRYVDRQKLNLLETKLQLVQGIR
NT seq
2313 nt
NT seq
+upstream
nt +downstream
nt
atgttccgctacgagtctctggaagattgtcctctggatgaagatgatgatgcatttcaa
ggcctgggagaggaagatgaggagattgatcaattcaatgatgatacatttgggtcaggt
gcagttgatgacgactggcaggaagcacatgagcggctggccgagttggaagaaaagctg
ccagtggccgttaatgaacaaacaggcaatggagagagggatgaaatggacttgttgggt
gaccatgaagagaatctggcagaaagactcagtaagatggtgattgaaaatgaacttgaa
gatccagctatcatgagagcagtgcagacaaggccagttttacaacctcagccgggaagc
ctgaattccagtatctgggatggatctgaagttctgaggcgaatccgaggaccactactt
gctcaggaaatgccgacagtgtctgtcttagaatatgccttgcctcagaggctcccccag
ggcccagaagatgaccgggatctttctgagcgcgcgttaccaagaagatcaacttcacct
gtcattgggagtcctcctgttagagctgtccccataggcacaccacctaagcagatggct
gtacccagcttcaaccaacagatcttgtgtccgaagcctgtccatgttcggcccccgatg
ccaccgcgttatcctgctccctatggtgagaggatgtctccaaaccagctctgtggtgtc
ccgaactcttccctcttgggtcacccttttcctcctagcgttccccctgttttcagcccc
ctccagagagcacagcttcttggaggagcacagttacagcctggacgaatgtctcccagc
cagtttgcacgagtccctgggtttgtaggtagcccactggctgccatgaatccaaagctg
ctgcaagggcgagttgggcagatgcttcccccagcaccaggcttccgtgccttctttaat
gctccacccactgctacaccccctccacagcagcatcctcctggccctggacctcacctg
caaaacctaagatctcaggccccaatgtttagaccagatacaactcaccttcatccacag
catcggcgactcttacaccagagacagcaacagaataggaatcagcatcggaatctcaat
ggtgccggagatcgaggaagtcaccggaatagtcaccaagatcatctccgaaaggatccc
tatgccaatctcatgttgcagcgagagaaggattgggtctctaaaatccagatgatgcag
ctgcaaagcactgacccctacctggatgatttttattaccagaattacttcgaaaaactg
gagaaactatctgctgctgaagacatgcaaggggatggccctaaaaaggaacgcaccaag
ctcatcacccctcaggtggccaggctagagcatgcctataagccagtgcagtttgagggc
tctttgggaaagcttactgtctctagtgtgaacaatcctcgaaaaatgattgatgctgtt
gtgacatcccggagtgaggatgatgagacaaaagaaaaacaggttcgagacaaaagaagg
aaaacccttgtcataattgaaaaaacctatagtttactccttgacgtggaggattatgaa
aggcgctatctcctaagtctagaagaagaacggcctgtcctgattgaagaaaggaagcac
aaaatttgtagcatgtatgacaacttgaggggcaaattgcctggacaagagaggccaagc
gatgaccactttgtacagatcatgtgtatccgaaaagggaagagaatggttgcccgcatt
ctcccttttctgtccacagagcaagcagctgacattctcatgacaactgccaggaacctc
cctttccttatcaagaaggatgcgcaagatgaggtgctgccatgtttattgagtcccttt
tctctcctcctctatcatcttccatcagtgactgtcaccagccttctgcaacagctaatg
aacctacctcaaagtgcagccgcaccagcaccctccaaccctcacctcactgctgtgctt
cagaacaagtttggcctgtcactgctccttgtcctactgagccgtggggaagacctacag
aattcagaccttgctacagaatctacgcaaaatagccagtggacagagatgatgttcatg
gcaacccgagaacttctgcagattccccaagccgccctggccaagccaatctctataccc
accaacctagtgtcccttttctctcgctatgttgaccggcaaaaactgaacttgctagag
acaaaactgcagctggttcaggggatacgataa
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