Dipodomys spectabilis (banner-tailed kangaroo rat): 122105136
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Entry
122105136 CDS
T07891
Symbol
Prpf19
Name
(RefSeq) pre-mRNA-processing factor 19
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
dsp
Dipodomys spectabilis (banner-tailed kangaroo rat)
Pathway
dsp03040
Spliceosome
dsp04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
dsp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122105136 (Prpf19)
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
122105136 (Prpf19)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dsp03041
]
122105136 (Prpf19)
04121 Ubiquitin system [BR:
dsp04121
]
122105136 (Prpf19)
03400 DNA repair and recombination proteins [BR:
dsp03400
]
122105136 (Prpf19)
Enzymes [BR:
dsp01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
122105136 (Prpf19)
Spliceosome [BR:
dsp03041
]
Complex B
Other components
Prp19 complex
122105136 (Prpf19)
Complex C
Prp19-CDC5 complex
122105136 (Prpf19)
Ubiquitin system [BR:
dsp04121
]
Ubiquitin ligases (E3)
U-box type E3
122105136 (Prpf19)
DNA repair and recombination proteins [BR:
dsp03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
122105136 (Prpf19)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
Prp19
Beta-prop_EML_2
WDR55
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
ANAPC4_WD40
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_1st
Beta-prop_IFT140_1st
Beta-prop_SCAP
Beta-prop_EIPR1
Beta-prop_TEP1_C
NBCH_WD40
WDR90_beta-prop_4th
Beta-prop_IFT122_1st
Beta-prop_HPS5
U-box
Beta-prop_Vps41
Beta-prop_DCAF4
PEP5_VPS11_N
Beta-prop_RIG_2nd
WD40_RFWD3
Beta-prop_WDR19_1st
Beta-prop_SPT8
PROPPIN
Beta-prop_Nup120_160
eIF2A
Cytochrom_D1
RMC1_N
Beta-prop_WDR35_TULP_N
Beta-prop_DCAF12
zf-Nse
Beta-prop_LRRK2
DUF1830
ATG16
Cep57_MT_bd
Motif
Other DBs
NCBI-GeneID:
122105136
NCBI-ProteinID:
XP_042532209
LinkDB
All DBs
Position
Unknown
AA seq
504 aa
AA seq
DB search
MSLICSISNEVPEHPCVSPVSNHVYERRLIEKYIAENGTDPINNQPLSEEQLIDIKVAHP
IRPKPPSATSIPAILKALQDEWDAVMLHSFTLRQQLQTTRQELSHALYQHDAACRVIARL
TKEVTAAREALATLKPQAGLIVPQAVPSSQPSVVGAGEPMDLGELVGMTPEIIQKLQDKA
TVLTTERKKRGKTVPEELVKPEELSKYRQVASHVGLHSASIPGILALDLCPSDTNKILTG
GADKNVVVFDKSSEQILATLKGHTKKVTSVVFHPSQELVFSASPDATIRIWSVPNTSCVQ
VVRAHESAVTGLSLHATGDYLLSSSDDQYWAFSDIQTGRVLTKVTDEASGCSLTCAQFHP
DGLIFGTGTMDSQIKIWDLKERTNVANFPGHSGPITSIAFSENGYYLATAADDSSVKLWD
LRKLKNFKTLQLDNNFEVKSLIFDQSGTYLALGGTDVQIYICKQWTEILHFTEHSGLTTG
VAFGHHAKFIASTGMDRSLKFYSL
NT seq
1515 nt
NT seq
+upstream
nt +downstream
nt
atgtcgctcatctgctccatttccaatgaagtgccagagcatccatgtgtgtcccctgtc
tctaatcatgtgtatgagcggcggctcattgagaagtacattgcagagaatggtacagac
cctatcaacaaccagcctctctcggaggagcagctcattgacatcaaagttgctcaccca
atccggcccaaacctccctctgctaccagcatcccagccattctgaaagccttgcaggat
gagtgggatgctgtcatgctgcacagctttaccttgcgccagcagctgcagacgacccgc
caggagctgtcccacgctctctaccagcacgatgctgcctgccgtgtgatcgcccgtctc
accaaggaggtcactgctgcccgagaagctctggctactctgaaaccacaagctggtctc
atcgtgccgcaagctgtgccgagctcacagcccagtgttgtgggcgcaggtgagcccatg
gacttgggcgagctggtgggaatgactcccgagattatccagaagctacaagacaaggcc
actgtgctgaccacggagcgtaagaagagagggaagactgtgcctgaggagctggtgaag
ccagaagagctcagcaaataccggcaggtggcatcccacgtggggctgcacagtgccagc
attcctgggatccttgccctggatctctgtccctccgataccaacaagatcctcactgga
ggtgcagataaaaacgttgttgtctttgataagagttctgagcaaatcctggccactctc
aaaggccacaccaagaaagtcaccagtgtggtgtttcacccttctcaggaactggtgttt
tctgcctctccagatgccactatccggatttggtcagtcccgaacacctcatgtgtccag
gttgttcgcgcccacgagagcgctgtcacaggcctcagtctccatgccactggtgactat
cttctgagctcctctgatgaccagtactgggccttctctgacatccagacggggcgtgtg
ctaaccaaggtgacagatgaggcctctggctgctctctcacctgtgcgcaattccaccct
gatgggctcatttttggaacaggaaccatggactctcagatcaagatctgggacttaaag
gagcgcaccaatgtggccaacttccctggccactcaggtcctatcaccagcatcgccttc
tcagagaatggctactacctggccacagcagctgacgactcctctgtcaagctttgggac
ttgcgtaagcttaagaacttcaagacgttgcagctggacaacaactttgaggtgaagtca
ctgatctttgaccagagtggcacctacctggcccttggaggcacagatgtccagatctac
atctgcaaacagtggacagagattcttcactttacagagcacagtggcctgactacgggg
gtggccttcggacaccacgccaagttcatcgcttcaaccggcatggacagaagcctcaag
ttctacagcctgtag
DBGET
integrated database retrieval system
