Dipodomys spectabilis (banner-tailed kangaroo rat): 122105338
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Entry
122105338 CDS
T07891
Symbol
Ighmbp2
Name
(RefSeq) DNA-binding protein SMUBP-2 isoform X1
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
dsp
Dipodomys spectabilis (banner-tailed kangaroo rat)
Brite
KEGG Orthology (KO) [BR:
dsp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
dsp03009
]
122105338 (Ighmbp2)
03012 Translation factors [BR:
dsp03012
]
122105338 (Ighmbp2)
Enzymes [BR:
dsp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
122105338 (Ighmbp2)
5.6.2.5 RNA 5'-3' helicase
122105338 (Ighmbp2)
Ribosome biogenesis [BR:
dsp03009
]
Eukaryotic type
Other ribosome biogenesis factors
122105338 (Ighmbp2)
Translation factors [BR:
dsp03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
122105338 (Ighmbp2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_11
AAA_12
SMUBP-2_HCS1_1B
AAA_30
R3H
AAA_19
Viral_helicase1
ResIII
AAA_16
zf-AN1
Helicase_RecD
nSTAND3
DEAD
AAA_25
AAA_22
UvrD-helicase
SLFN-g3_helicase
ABC_tran
Flavi_DEAD
PhoH
IstB_IS21
DnaB_C
AAA
NPHP3_N
UvrD_C_2
AAA_31
Zot
SRP54
NTPase_1
Amnionless
Motif
Other DBs
NCBI-GeneID:
122105338
NCBI-ProteinID:
XP_042532488
LinkDB
All DBs
Position
Unknown
AA seq
1008 aa
AA seq
DB search
MASAAVEDFVAKQLSLLSLERDAELQERRAWQENSSLKELQSRGVCLLKLQLASQRTGLY
GQLLVTFEPGRGGSATGLPSNSFSSGDIVGLYGSGNQDGQLATGVLTRVTQRSVTVAFDE
SHDFQLNLDPEASYRLLKLANDVTYKRLKNALLFLKKYHSGPASSLIEVLFGGAAPSPAS
ETSPLTFYNPALDASQKEAVSFALAQKELAIIHGPPGTGKTTTVVEIILQVVKQGSKVLC
CAPSNIAVDNLVERLAGRRLRVLRLGHPARLLESVQQHCLDAVLARSDSAQVVADIRRDM
DQIFLKNKKAHDKREKSNFRNEMKLLRKELKEREEAAMVEGLAAADVVLATNTGASPDGP
LKLLPEGHFDVVVIDECAQALEASCWIPLLKARRCILAGDHRQLPPTTASHKAALAGLSL
SLMERLAQERGPDVVRMLTVQYRMHQAIMRWASEAMYHGQLTAHSSVAGHLLRDLPGVAD
TEETSIPLLLVDTAGCGLFELEEDDNQSRGNPGEVRLVTLHIQALVAAGVHAGDIAVIAP
YNLQVELLRQSLAHQYPELEIKSVDGFQGREKEAVILSFVRSNRRGEVGFLAEDRRINVA
VTRARRHVAIVCDSRTVNNHAFLKTLVEYFTEHGEVRTAFEYLEDIIPENYAHEGSQGPR
RAAARPRGPAFLSMPASTQAPRGPEAKAVPQGEPRKPRTRPPQPRSDGGRPGGTEHLRAK
ITEFLDSKETQLQFPTSLSSHDRLRVHQIAEELGLCHDSAGEGAARYVTVSKRGAPAPTP
VPVGEPRGEQGRQDQPAKEQQPDKKEKPDKQQPDKKEQPDKKEKPDKRQPDKKEKPDKQQ
PDKKEQPDKEQPDKKPQKLPQNKKKKTREAKGPAASALPAEEDLDALLSAVTKADNTCSF
AKCAASIVTLGQLCQLCGHRYCLSHHLPEVGDRREPAEPLRVHGCGEKARAHARQKLRRE
GVPSAGSGARDRPLDPARRAQLQRRLDLRLGELSGQRTSKKKEKDRGT
NT seq
3027 nt
NT seq
+upstream
nt +downstream
nt
atggcctcggcggcggtggaggacttcgtggccaagcagttgtccctgctgagcctcgag
agggacgcggagctgcaggagcgcagggcctggcaggagaacagctctctgaaggagctc
cagagcaggggcgtgtgtctgctaaagctgcagctggccagccagcgcacggggctgtat
ggacagcttctggtcaccttcgagccggggcgaggcgggtctgccacaggccttcccagc
aacagcttctcttccggcgatatcgtgggcctgtacggttctgggaaccaggatggtcag
cttgccaccggggtcctgactcgagtcacccagaggtcagtcacggtggcctttgatgag
tctcatgacttccagttgaacctggaccctgaagcttcctacaggttgctaaagcttgcc
aacgacgtcacttacaagcgactcaagaatgcgctgctcttcctgaagaagtaccactcc
gggcccgcgtcctcgctcatagaggtcctgttcggtggagctgctcccagtcctgccagt
gaaacatccccgctgacgttctacaaccccgccctggacgcctcccagaaggaagctgtg
tcctttgccttggcccagaaagaactcgccatcatccacggacctcctggcactgggaaa
accacaaccgtggtggaaataatcctccaagtggtgaagcaggggtcgaaggtactatgc
tgtgcaccctccaacatcgccgtggacaacctggtggagaggctggccggccgcaggctg
cgtgtcctgcgcctcggccaccccgcccgcctgctggagtccgtgcagcagcactgtctg
gacgccgtgctggcgcgcagtgacagtgcccaggttgtcgccgacatcaggagggacatg
gaccagatcttcctgaaaaacaaaaaggcacatgataagagagagaaaagtaatttccgc
aatgaaatgaagttactaagaaaagagctgaaggaaagggaagaagcggccatggtggaa
ggcctcgcagcggctgacgtggtgctggcaaccaacacgggtgcctctcccgacggcccc
ctgaagctgctgcccgagggccactttgacgtggtggtcattgacgagtgtgcccaggcc
ctggaggccagctgctggatccctctgctgaaggccaggaggtgcatcctggccggagac
cacaggcagctgccgcccaccacggcctctcacaaggcagcgctggcggggctgtcgctc
agcttgatggagcgcctggcccaggagcgtggccccgatgtggtgcggatgctcacggtg
cagtaccgcatgcaccaggccatcatgcgctgggcctccgaggccatgtaccatgggcag
ctcacagcccactcctccgtggcgggacatctcctgagggacctccccggcgtggctgac
acggaggagaccagcatccccctgctgctcgtggacacggccggctgtggcctatttgaa
ctggaggaagatgacaaccagtccagggggaacccaggcgaagtccgccttgtcactttg
cacatccaggctctggtggccgctggtgtccacgcaggagacatcgctgtcatcgcgccc
tacaaccttcaggtggagctgctccgacagagcctggcgcaccagtaccccgagctggaa
atcaagtccgtggacggcttccagggccgagagaaggaggctgtgatcctctccttcgtc
aggtccaaccggagaggcgaagttggttttctggctgaggaccggcggatcaatgtcgcg
gtcacccgtgcacggcgccatgtggcgattgtctgtgactcccgcaccgtgaacaaccac
gcttttctaaagacactggtggagtatttcacagagcacggggaagtgcgcaccgccttc
gagtacctggaggacatcatccctgagaactatgcccacgagggctcccagggtccccgc
cgagccgctgcccggccccggggccctgcgttcctcagcatgcctgcgagtacgcaggcc
ccgcgcggcccggaggccaaggccgtgccccagggggagcccaggaagccccgcacgagg
cccccgcagccacgcagcgacggggggcgcccgggtggcacggagcacctgcgggccaag
atcacagagttcctggacagcaaggagacgcagttgcagttccccacatccctcagctcc
catgacaggctgcgcgtccaccagatcgccgaggagctggggctgtgccatgacagcgct
ggggagggggcggcgcggtacgtcaccgtgagcaagaggggcgccccagcccccacccca
gtgcccgtgggcgagccccggggggagcagggcagacaggaccagccagccaaggaacag
cagccagacaagaaggagaagccagacaagcagcagccagacaagaaggagcagccagac
aagaaggagaagccagacaagcgacagccagacaagaaggagaagccagacaagcagcag
ccagacaagaaggagcagccagacaaggagcagccagacaagaagccccagaagctgccc
cagaacaagaagaagaagacgagggaagcaaagggacccgcggcctccgctctgcccgcc
gaggaggatcttgacgccctgctgtcggccgtgaccaaggccgacaacacctgcagcttc
gccaagtgcgcggccagcatcgtgaccctgggccagctctgccagctctgcggccaccgc
tactgcctcagccaccacctgcccgaggtgggtgaccggagggaaccggcggagccgctt
cgggtccacggctgcggcgagaaggcccgcgcacacgcccgccagaaactccgccgggaa
ggggtccccagtgcaggcagcggggccagggacaggcccctggaccccgccaggagggcc
cagctgcagcgaaggctggacctgaggctgggcgagctcagcggccagaggaccagtaag
aagaaggagaaggacagggggacgtga
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