Dipodomys spectabilis (banner-tailed kangaroo rat): 122105970
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Entry
122105970 CDS
T07891
Symbol
Snrnp40
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
KO
K12857
Prp8 binding protein
Organism
dsp
Dipodomys spectabilis (banner-tailed kangaroo rat)
Pathway
dsp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dsp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122105970 (Snrnp40)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dsp03041
]
122105970 (Snrnp40)
Spliceosome [BR:
dsp03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
122105970 (Snrnp40)
Complex C
U5 SnRNP specific factors
122105970 (Snrnp40)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
WD40_Prp19
Beta-prop_TEP1_2nd
WD40_CDC20-Fz
WD40_WDHD1_1st
EIF3I
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
Beta-prop_EML
NBCH_WD40
WDR90_beta-prop_4th
Beta-prop_SCAP
WD40_MABP1-WDR62_1st
ANAPC4_WD40
Beta-prop_EIPR1
Beta-prop_SPT8
Beta-prop_IFT122_1st
Beta-prop_RIG_2nd
Beta-prop_DCAF4
WD40_RFWD3
Beta-prop_IFT140_1st
Beta-prop_WDR75_2nd
Beta-prop_WDR19_1st
Beta-prop_Vps41
eIF2A
Beta-prop_WDR35_TULP_N
Beta-prop_HPS5
Beta-prop_NWD2_C
Beta-prop_RIG_1st
Cytochrom_D1
WD40_like
WDR54
Beta-prop_Nup120_160
Motif
Other DBs
NCBI-GeneID:
122105970
NCBI-ProteinID:
XP_042533214
LinkDB
All DBs
Position
Unknown
AA seq
358 aa
AA seq
DB search
MIEQQKRKGPELPLVPIKRPRHELLLGAAGSVPGAGQQQATPGALLQAGPPRCSSLQAPI
MLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNT
DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW
DIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVT
GLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSK
IAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPIILSASSDKRLYMGEIQ
NT seq
1077 nt
NT seq
+upstream
nt +downstream
nt
atgatagaacagcagaagcgtaaaggcccggagttgccgctggtcccgatcaagcggcca
cggcatgagttgcttttgggagcggcggggtcggtccccggagccggacagcagcaggcg
acgcctggggctttgctgcaagcgggccctccaaggtgttcctcccttcaggcccctatc
atgctgctctcaggacatgaaggagaagtttactgttgcaagtttcaccccaatggatcc
accttagcttctgcaggatttgaccgtcttatattgctgtggaatgtctatggtgactgt
gataactatgccacattaaagggccacagtggagctgtgatggagctacattataacacg
gatggcagtatgctcttctcagcatccacagataaaactgtggcagtgtgggacagtgaa
acaggcgagagggtcaaaaggctgaagggacacacttcctttgtgaactcctgttaccca
gccaggaggggcccccagcttgtctgcactggcagtgacgatggtacagtgaagctttgg
gacatccggaagaaagcagctatccagacatttcagaacacataccaggtgttagcagtg
accttcaatgacacaagtgatcagattatctctggaggaatagacaatgatattaaggtc
tgggacctacgccagaacaagctaacctacaccatgagaggccatgcagattcagtgact
ggcctgagtttaagttctgaaggttcttacctcttgtccaatgccatggacaatacagtg
cgtgtctgggatgtgcggccctttgccccaaaagagaggtgtgtgaagatatttcaagga
aatgtacacaactttgaaaagaatctcctgagatgttcttggtcacctgatggaagcaaa
atagcagctggctcagcagacaggtttgtgtatgtgtgggacactaccagcaggagaatc
ctgtataagctgcctggccatgctggctccatcaatgaagtagccttccacccggatgag
cccatcattctctcagcatccagtgacaagagactgtacatgggagagatccagtga
DBGET
integrated database retrieval system
