Dipodomys spectabilis (banner-tailed kangaroo rat): 122106164
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Entry
122106164 CDS
T07891
Symbol
Pabpc4
Name
(RefSeq) polyadenylate-binding protein 4 isoform X1
KO
K13126
polyadenylate-binding protein
Organism
dsp
Dipodomys spectabilis (banner-tailed kangaroo rat)
Pathway
dsp03015
mRNA surveillance pathway
dsp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dsp00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122106164 (Pabpc4)
09123 Folding, sorting and degradation
03018 RNA degradation
122106164 (Pabpc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dsp03019
]
122106164 (Pabpc4)
03041 Spliceosome [BR:
dsp03041
]
122106164 (Pabpc4)
Messenger RNA biogenesis [BR:
dsp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
122106164 (Pabpc4)
mRNA cycle factors
Stress granule specific factors
122106164 (Pabpc4)
Spliceosome [BR:
dsp03041
]
Complex C
Other components
Complex C specific factors
122106164 (Pabpc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RRM_7
RRM_occluded
RRM_10
RBD_RDR6
RRM_3
POP1_C
ApbA_C
Motif
Other DBs
NCBI-GeneID:
122106164
NCBI-ProteinID:
XP_042533392
LinkDB
All DBs
Position
Unknown
AA seq
660 aa
AA seq
DB search
MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEK
HEDANKAVEEMNGKEISGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKN
LDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS
KPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPAVPQAQGRP
PYYTPNQLAQMRPNPRWQQGGRPQGFQGMPSAIRQSGPRPTLRHLAPTGNAPASRGLPTT
TQRVGSECPDRLAMDFGGAGAAQQGLTDSCQSGGVPTAVPNLAPRAAVAAAAPRAVAPYK
YASSVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHS
NLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQKVGAVAAATS
NT seq
1983 nt
NT seq
+upstream
nt +downstream
nt
atgaacgctgcagccagcagctaccccatggcctccctgtacgtgggcgacctgcactcg
gacgtcaccgaggccatgctgtacgaaaagttcagtcctgcggggcctgtgctgtccatc
cgggtctgccgcgatatgatcacccgccgctctctgggctatgcctacgtcaacttccag
cagccagctgacgctgagcgggccttggacaccatgaactttgatgtgattaagggaaag
ccaatccggatcatgtggtctcagagggatccctctttgagaaaatctggtgtgggaaat
gtcttcatcaagaacctggacaaatctatagataacaaggcactttatgatactttttcc
gcttttggaaatattctgtcctgcaaggtggtgtgtgatgagaacggctctaagggttat
gcctttgtccacttcgagacccaagaggctgctgacaaggccatcgagaagatgaatggc
atgctcctcaatgaccgcaaagtgtttgtagggagattcaagtctcgcaaagagcgtgaa
gctgaacttggagccaaagccaaggaattcacgaatgtttatatcaaaaactttggggaa
gaggtggatgatgagaatctgaaagagctatttagccagtttggtaagactctcagtgtc
aaggtgatgagagatcccagcgggaaatccaaaggcttcggctttgtgagttacgaaaaa
cacgaggatgccaataaggccgtggaagaaatgaatggaaaagaaatcagtgggaaggct
atatttgtaggccgtgcacagaagaaagtagaacggcaggctgagctaaagcggaaattt
gaacagctgaaacaggagagaataagccgataccagggtgtgaatctctacattaagaac
ttggatgataccattgatgatgagaaattaagaaaagaattttctccttttggctcaatc
accagtgctaaggtgatgctagaggatggaaggagcaaagggttcggcttcgtctgcttc
tcttcccctgaagaagcaaccaaagcagtcactgagatgaatggacgcattgttggctcc
aagcctctgtatgttgccctggcccagaggaaggaagaaagaaaggctcacctgacaaac
cagtacatgcagcgggtggccgggatgagagcactccctgccaatgccatcttgaatcag
ttccagcctgcagctggtggctattttgtgccagcagttccacaggctcagggaagacct
ccatattacacccctaaccagttagcacaaatgaggcctaacccacgctggcagcaaggc
gggagacctcaaggcttccaaggaatgccaagtgccattcgccagtctgggcctcgtcca
actcttcgccatctggctccaactggtaatgctccggcctctcgtggcctccctactacc
actcagagagtcgggtctgagtgcccggaccgcttggctatggactttggtggggctggt
gccgcccagcaagggctgactgacagctgccagtctggaggtgttcccacagctgtgccc
aacctagcacctcgcgctgcagttgctgctgctgctcctcgggctgtggcaccctacaag
tatgcctccagtgtccgcagcccccaccctgccatacagcctctgcaggcaccgcagcct
gcagtccatgtacaggggcaagagcctctaacagcctccatgctggctgcagcacccccc
caagaacagaaacagatgctgggagaacgtttgtttccccttatccaaacaatgcattca
aatctggctggaaagatcacagggatgctgctggagatcgacaactctgagctgctgcac
atgctggagtccccagagtccctccgctccaaggtagatgaagctgtagcagttctacag
gctcatcatgccaagaaagaagctgcccaaaaggtgggcgctgttgctgctgctacctct
tag
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