Dipodomys spectabilis (banner-tailed kangaroo rat): 122106299
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Entry
122106299 CDS
T07891
Symbol
Col2a1
Name
(RefSeq) collagen alpha-1(II) chain isoform X1
KO
K19719
collagen type II alpha
Organism
dsp
Dipodomys spectabilis (banner-tailed kangaroo rat)
Pathway
dsp04151
PI3K-Akt signaling pathway
dsp04510
Focal adhesion
dsp04512
ECM-receptor interaction
dsp04974
Protein digestion and absorption
dsp05165
Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:
dsp00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
122106299 (Col2a1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
122106299 (Col2a1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
122106299 (Col2a1)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
122106299 (Col2a1)
09160 Human Diseases
09172 Infectious disease: viral
05165 Human papillomavirus infection
122106299 (Col2a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
dsp00536
]
122106299 (Col2a1)
Glycosaminoglycan binding proteins [BR:
dsp00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
122106299 (Col2a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
122106299
NCBI-ProteinID:
XP_042533577
LinkDB
All DBs
Position
Unknown
AA seq
1487 aa
AA seq
DB search
MIRLGAPRSLVLLTLLVAAVLRCQGQDIQEAGSCLQGRQRYNDKDVWKPETCRICVCDNG
TVLCDDIICEDAKDCLHPEIPFGECCPICPADLATASGQPGPKGQKGEPGDIKDIIGPKG
PPGPQGPVGEQGPRGDRGDKGEKGPPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFA
AQMAGAFDEKAGGAQMGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMG
PRGPPGPPGKPGDDGEAGKPGKSGERGLPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKG
EAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVG
PAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGNPGSPGPAGASGNPGTDGIPGAKG
SAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGAAGPQG
APGPAGEEGKRGARGEPGGAGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAG
PKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKIGPSGTPGEDGRPGPPGPQGARGQPG
VMGFPGPKGANGEAGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPG
PSGFQGLPGPPGPPGEGGKPGDQGIPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGSRG
LPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPG
KDGARGLTGPIGPPGPAGANGEKGEAGLPGPTGSAGARGAPGERGETGPPGPAGFAGPPG
ADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPG
AAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGDPGLQGPAGPPGEKGEAG
DDGPSGADGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPG
PVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGALGAPGAPGPPGSPGPAG
PTGKQGDRGEAGAQGPMGPSGPAGARGIPGPQGPRGDKGDSGEPGERGVKGHRGFTGLQG
LPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAG
PPGNPGPPGPPGPPGPGIDMSAFAGLGQREKGPDPLQYMRADQAAGNLRQHDVEVDATLK
SLNNQIESIRSPEGSRKNPARTCRDLKLCHPEWKSGDYWIDPNQGCTLDAMKVFCNMETG
ETCVYPNPASVPKKNWWSSKSKEKKHIWFGETINGGFHFSYGDDNLAPNTANVQMTFLRL
LSTEGSQNITYHCKNSIAYLDEVAGNLKKALLIQGSNDVEMRAEGNSRFTYTALKDGCTK
HTGKWGKTVIEYRSQKTSRLPIIDIAPMDIGGPEQEFGVDIGPVCFL
NT seq
4464 nt
NT seq
+upstream
nt +downstream
nt
atgatccgcctcggggctccccgatcgctggtgctgctgacgctgctggtcgccgctgtc
cttcggtgtcagggccaggatatccaggaggctggcagctgtttgcagggcaggcagagg
tataatgataaagatgtatggaagcccgagacctgccggatctgtgtctgtgacaatggg
actgtcctctgcgacgacataatctgtgaagacgcgaaagactgcctccaccctgaaatc
cccttcggagagtgctgccccatctgcccagctgacctcgccactgccagtgggcaacca
ggaccaaagggacagaaaggagaacctggagacatcaaggatatcataggacctaaagga
cctcctggacctcagggacctgtaggtgaacaaggacccagaggtgatcgtggtgacaaa
ggagaaaaaggtccacctggacctcgtggcagagatggagagcctggaacccctggaaat
cctggtccccctggccctccaggccctcctggtccccctggccttggtgggaactttgct
gcccagatggctggagcatttgatgagaaggctggtggcgcccagatgggagtaatgcaa
ggtccaatgggccctatgggacctcgaggacccccaggtcctgctggtgctcctggccct
caaggatttcaaggcaatcccggtgaacctggcgaacctggtgtctctggtcctatgggt
ccccgtggtcctcctggcccccctggaaaacctggtgacgacggtgaagctggaaaacct
ggaaaatctggtgaaagaggccttcctggccctcagggtgctcgaggcttcccaggaacc
ccaggccttcctggtgtcaaaggtcacagaggctacccaggcctagatggagctaaagga
gaagctggtgctccaggtgtgaagggtgaaagtggctctcctggtgagaatggttctcca
ggcccaatgggtccccgaggcttgcctggtgagagaggacggaccggccctgctggtgct
gcgggtgcccggggcaatgacggccagccaggccctgctgggcctccgggtcctgtcggt
cctgctggtggtcctggctttcctggcgctcctggtgctaagggtgaagctggccccaca
ggtgcccggggtcctgaaggtgctcaaggtcctcgaggtgaacctggcaaccctgggtcc
cctgggcctgctggtgcttctggtaaccctggaacagatggtattcctggagccaaagga
tctgctggtgctcctgggattgctggcgctcctggcttccctggacctcgtggtcctcct
ggccctcaaggtgcaactggtcctctgggccccaaaggtcagacgggtgagcctggtatt
gctggcttcaagggtgagcaaggccccaaaggagaacctggtgctgctggcccccaagga
gccccaggtcctgctggtgaagaaggcaaacgaggtgcccgtggagagcctggtggtgct
gggcccattggtccccctggagaaagaggtgctcctggcaaccgaggtttcccaggtcag
gatggtctggctggtcccaagggagcccctggagagcgaggtcccagtggtcttgctggc
cccaagggagccaatggtgaccctggccgtcctggagaacctggccttcctggggcccgg
ggtctcactggccgccctggtgatgctggtcctcaaggcaaaattggtccttctggaact
cctggtgaagatggtcgccctggacctccgggtcctcagggagctcgtgggcagccaggt
gtcatgggcttccctggccccaaaggtgccaatggtgaggctggtaaagctggtgagaag
ggactgcctggtgctcctggtcttagaggtcttcctggtaaagatggcgagacaggtgct
gcaggacctcctggccccgctggacctgctggtgaacgaggcgaacagggtgctcctggg
ccatctgggttccagggacttccaggccctcctggtcccccaggtgaaggtggcaaacca
ggtgaccagggtattcctggtgaagctggagccccaggccttgtgggtcccaggggtgaa
cgaggtttcccaggtgaacgcggctctcccggtgcccagggccttcaaggttcccgtggt
ctccctggcactcctggcactgatggtcccaaaggtgcgtctggcccagctggtccccct
ggggctcaaggccctccaggtcttcaaggaatgccgggggaaagaggagcagctggtatc
gctggacccaaaggagacaggggtgatgttggtgagaaaggccccgagggagcccctgga
aaggacggtgcacgaggtttaactggtcccatcggtccccccggcccagcaggcgccaat
ggcgagaagggcgaagctggacttcctgggcccactggaagtgctggtgctcgtggtgct
ccgggtgaacgtggggagactggtcccccaggacctgctggatttgctggacctcctggt
gctgatggccaacctggtgccaagggtgagcagggagaggctggacagaaaggtgatgct
ggtgcccctggccctcagggtccttctggagctcctggaccacagggtcctactggagtg
actggtcctaaaggagcacgaggtgcccaaggccctccgggagccactggattccctgga
gctgctggccgagttggacccccaggctctaatggcaatcctggaccccctggtcctcct
ggtccttctggaaaagatggccccaaaggtgcacgaggagacagcggcccccctggcaga
gctggtgaccctggcctccaaggtcctgcaggaccccctggcgagaagggagaggctgga
gatgatggtccttctggtgctgatggtcctccaggtccccagggtctggctggtcagagg
ggcattgttggtctacctgggcagcgtggtgagagaggattccctggcctacctggtcca
tcgggtgagcctggcaagcagggtgcccctggtgcatctggagaccgaggcccccctggt
cccgtggggcctcctggcctgacaggtcctgcaggtgaacctggacgagagggcagtcct
ggtgctgatggcccccctggtagagatggcgcagctggagtcaagggtgatcgtggtgag
actggtgccctgggagctcctggagcccctggcccccctggttctcctggccctgctggc
ccaactggaaagcagggagacagaggagaggctggtgcacaaggccccatgggaccctca
ggaccagctggagcccgaggaatcccaggccctcaaggcccccgaggtgacaaaggagac
tctggagagcctggtgaaaggggagtgaagggacatcgtggcttcactggccttcagggt
cttccgggccctcccggtccttctggagaccaaggtgcttctggtcctgctggtccttct
ggccctcggggtccacctggtcctgtgggtccctctggcaaagatggcgctaatggaatc
cctggtcccattgggcctcctggtcctcgtggacgttcaggcgaaactggccctgctggt
cctcctggaaatcctggaccccctggtcctccaggtccccctggccctggtatcgacatg
tccgcctttgccggcctaggccagagagagaagggtcctgaccccctgcagtacatgcga
gctgaccaggcagctggtaatctgagacaacatgatgttgaggtagatgccacactcaag
tcactcaacaaccagatcgagagcattcgcagtcctgagggttcccgcaagaatcctgcc
cgcacctgccgtgacctgaaactctgccatccagagtggaagagcggagactactggatt
gaccccaaccagggctgtaccttggatgccatgaaggttttctgcaacatggagacaggc
gagacctgcgtctaccccaacccagcaagtgtgcccaagaagaactggtggagcagcaag
agcaaggagaagaaacacatctggtttggagaaaccatcaatggtggcttccatttcagc
tatggagatgacaacctggctcccaacaccgccaatgtccagatgaccttcctgcgcctg
ctgtccaccgagggttcccagaacatcacctaccactgcaagaacagcattgcctacctg
gatgaagtagctggcaacctcaagaaggccttgctcatccagggctccaatgatgtagag
atgagggctgagggcaacagcaggttcacatacaccgccctgaaggatggctgcacgaaa
cacactggtaagtggggcaagactgtcatcgagtaccggtcacagaagacctcacgcctc
cccatcattgacattgcacccatggacatcggagggcctgagcaggaatttggtgtggac
ataggacctgtctgcttcttgtaa
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integrated database retrieval system
