Dipodomys spectabilis (banner-tailed kangaroo rat): 122106331
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Entry
122106331 CDS
T07891
Symbol
Prpf40b
Name
(RefSeq) pre-mRNA-processing factor 40 homolog B isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
dsp
Dipodomys spectabilis (banner-tailed kangaroo rat)
Pathway
dsp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dsp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122106331 (Prpf40b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dsp03041
]
122106331 (Prpf40b)
Spliceosome [BR:
dsp03041
]
Complex A
U1 snRNP components
U1 related factors
122106331 (Prpf40b)
Complex B
122106331 (Prpf40b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
DUF4936
WW_2
RhoGAP-FF1
Motif
Other DBs
NCBI-GeneID:
122106331
NCBI-ProteinID:
XP_042533628
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All DBs
Position
Unknown
AA seq
889 aa
AA seq
DB search
MSVPDSGPRPPAAPAPFPPGPPMMPPPFMPPPGIPPPFPPMGLPPMSQRPPAIPPMPPGI
LPPMLPPMGAPPPLTQIPGMVPPMMPGMLMPAVPVTAATAPGADTASSAVAGTGPLRALW
SEHVAPDGRIYYYNADDKQSVWEKPSVLKSKAELLLSQCPWKEYKSDTGKPYYYNNQSQE
SRWTRPKDLDDLEALVSQEAAGKQQQSQTLQPQPPQSQPDPPPVPPGPTTVSTGFLEPEP
GGSEDCGISEAAQPLEQGFLQQPEEGPSSSTGQHQEEEESKPEPERSGLSWSNREKAKQA
FKELLRDKAVPSNASWEQAMKMVVTDPRYSALPKLSEKKQAFNAYKAQREKEEKEEARLR
AKEAKQTLQHFLEQHERMTSTTRYRRAEQTFGELEVWAVVPERDRKEVYDDVLFFLAKKE
KEQAKQLRRRNIQALKSILDGMSSVNFQTTWSQAQQYLMDNPSFAQDQQLQNMDKEDALV
CFEEHIRALEREEEEERERARLRERRQQRKNREAFQTFLDELHETGQLHSMSTWMELYPA
VSTDVRFANMLGQPGSTPLDLFKFYVEELKARFHDEKKIIKDILKDRGFCVEVNTAFEDF
AHVISFDKRAAALDAGNIKLTFNSLLEKAEAREREREKEEARRMRRREAAFRSMLRQAVP
ALELGTAWEEVRERFVCDSAFEQITLESERIRLFREFLQVLEQTECQHLHTKGRKHSRKG
KKHHRKRSHSPSGSESEEEELPPPSLRPPKRRRRNPSESGSEPSSSLDSVESGGATLGGR
GSPSSHLLGSEHGLRKAKKPKKKTKKRRHKSNSPESETEPEEKPGKESEEKEQEQAKDME
LRQAELPNRSPGFGVKKEKTGWDTSESELSEGELERRRRTLLQQLDDHQ
NT seq
2670 nt
NT seq
+upstream
nt +downstream
nt
atgtcggttcccgattctggtccccggcccccagcagcgcctgcccccttcccaccgggg
ccccccatgatgccaccacccttcatgccccctccagggattccccctccctttcctccg
atggggctccctcctatgagtcagagaccaccagcgattccccccatgccaccaggcatt
ctgcccccaatgcttccgcccatgggggcaccaccaccactcacacagataccaggaatg
gtacctccaatgatgccaggaatgctgatgccagcagtgcccgtcaccgcagcgacggct
ccgggtgcggacaccgccagctctgctgtggctggaacaggccctctgagggccctatgg
agtgagcatgtggcccctgatgggcgcatctactactacaatgctgacgacaagcagtcc
gtgtgggagaagcccagcgtgctcaagtccaaggcagagctgctgctgtcccagtgcccc
tggaaagagtacaagtcggacacaggcaagccttactactacaacaaccagagtcaggag
tcccggtggacccgccctaaagacctggatgacctggaggctctagtcagtcaagaggct
gctgggaaacagcaacagtcacagacactccagccacagcctcctcagtcacagcctgat
cccccgcctgtacctccgggtcccaccacagtgtccacaggctttctggaacctgagcca
ggtgggagtgaagattgtggtatatcagaggctgcccagccactggagcagggcttcctg
cagcagccagaggagggtcccagcagttctactggacagcatcaggaggaagaagaatcc
aagccagaaccagagagatctggcctcagttggagcaaccgggagaaggcaaagcaggca
ttcaaggagctgctgagggacaaggctgtcccctccaatgcctcgtgggaacaggccatg
aagatggtggtcactgaccctcgttacagtgccttgcctaaactgagtgagaaaaagcag
gcattcaatgcctacaaggcacagcgggaaaaggaggagaaggaagaggctcggctcagg
gccaaggaagccaagcagacccttcagcatttcctggagcaacacgaacgcatgacctcc
accacacgctaccggcgggcagaacagacctttggggagctggaggtctgggctgtggtt
cctgaaagggatcgaaaagaggtttatgatgatgtcctcttcttcctggccaagaaggag
aaggaacaggccaagcagctccggcgccgcaacatccaggccctgaagagcatcttggat
gggatgagtagcgttaacttccaaaccacatggtcccaggcccagcagtacctcatggat
aaccccagttttgctcaggaccagcagctgcagaatatggataaggaagatgccctggtc
tgctttgaggagcacatccgagccttagagagggaggaagaggaagagcgggagcgggcc
cggcttcgggagcggcgccagcagcgcaagaaccgggaggccttccagaccttcctggac
gagctgcacgagacagggcagctacactccatgtctacctggatggagttgtacccagca
gtcagcactgatgtccgctttgccaacatgctgggccagccgggctccacccctctggac
ttattcaagttttatgtggaggagttgaaggcacgattccatgatgagaagaagatcatt
aaagacattcttaaggaccggggcttctgtgtggaggtgaacacagcctttgaggacttc
gcccacgtcataagctttgacaagagggctgctgcgctggacgcaggcaacatcaagctg
accttcaatagtctgctggagaaggcagaggcccgggagagggagcgggaaaaggaggag
gcacggaggatgcggcgcagggaggctgcctttcgaagcatgctgaggcaggccgtgcct
gctctggagctgggcactgcgtgggaagaggtccgtgagcgctttgtgtgcgactcagcc
tttgagcagatcaccctggagtcggagaggatccggctcttccgggagttcctgcaggtg
ctggagcagaccgaatgccagcacctccataccaaaggccgaaagcacagcaggaagggc
aagaagcaccatcggaaacgctcgcactcgccttcaggctctgagtcagaagaggaggag
ctgcccccaccatccctccgaccccccaagcgaaggcggcggaatccctcagagtcaggc
tctgagccttcatcatcacttgattcagttgaaagtgggggtgctaccctcggaggacgg
ggatccccatcttcccacctccttggatcagagcatggccttcggaaagccaagaaacca
aaaaagaaaactaagaaaagaagacacaagtcgaacagtcctgagagtgagacagagccc
gaggagaagcctggcaaagagagtgaagaaaaagaacaggaacaggctaaggatatggag
ctccggcaggcagaactccctaaccgctccccaggcttcggagtcaagaaggagaagaca
ggctgggacacatcagaaagtgagctgagtgagggagagctggagaggcgccggcggaca
ctcctgcagcagctagatgaccaccagtga
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integrated database retrieval system
