Dipodomys spectabilis (banner-tailed kangaroo rat): 122106646
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Entry
122106646 CDS
T07891
Symbol
Rfc1
Name
(RefSeq) replication factor C subunit 1 isoform X1
KO
K10754
replication factor C subunit 1
Organism
dsp
Dipodomys spectabilis (banner-tailed kangaroo rat)
Pathway
dsp03030
DNA replication
dsp03410
Base excision repair
dsp03420
Nucleotide excision repair
dsp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dsp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
122106646 (Rfc1)
03410 Base excision repair
122106646 (Rfc1)
03420 Nucleotide excision repair
122106646 (Rfc1)
03430 Mismatch repair
122106646 (Rfc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dsp03032
]
122106646 (Rfc1)
03400 DNA repair and recombination proteins [BR:
dsp03400
]
122106646 (Rfc1)
DNA replication proteins [BR:
dsp03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
122106646 (Rfc1)
DNA repair and recombination proteins [BR:
dsp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
122106646 (Rfc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
PTCB-BRCT
RuvB_N
BRCT_2
Rad17
AAA_14
AAA_22
AAA_17
AAA_5
AAA_33
AAA_18
AAA_16
nSTAND3
AAA_7
RNA_helicase
AAA_30
NTPase_1
TIP49
AAA_19
Motif
Other DBs
NCBI-GeneID:
122106646
NCBI-ProteinID:
XP_042534000
LinkDB
All DBs
Position
Unknown
AA seq
1153 aa
AA seq
DB search
MDIRKFFGVIPSGKKAVNETVKKNEKTKSAEETLKSKKGIKEIKVNSSCKEDASKQKQTN
RKKRIIYDSDSESEETMQVKNAKKQSEKLPLSSKPSKILRQDPVTYVSETDEDDDFLSKK
TASKSKENGRSKNSYLGVSNMKKNEENTKIKNKPLSPIRLTPTSVLDYFGTGSVRRSDKK
MVASKRKEPSPNTDDSRLNDEAIAKQLQLDEDAELERQLHEDEEFARTLAMLDEEPKTKK
VQKVSGEGEAFSSVQDNLNKAEHTYPHTVKTEQLSNERKSYSPNKQTKCEHSKKSQQYSK
SSAHKTGESFSPKNSSKLALTQIKEERSYKESESVASKRKENAIELKEEKKTPQKSKNSP
AKKESVSPEDLEKKRTNYQAYRSYLNREGPKALGSKEIPKGAENCLEGLTFVITGVLESI
ERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTKIIDEDGLLNLIRT
MPGKKSKYEIAVEAEMKKEKTKLERTPKKNNQGKRKSSPTKKESESKKNKLTPKKDSPRK
ALKKETKEANVFPRGLDFSKQVAQETDDDSQARDLADDSSENQVENLLWVDKYKPTSLKT
IIGQQGDQSCANKLLRWLRNWHKSSPEEKKHAAKFGKCAGKDDGSSFKAALLSGPPGVGK
TTTASLVCQELGYSYVELNASDTRSKNSLKAIVAESLNNTSITGFYSGGSGGAASGSTKH
ALIMDEVDGMAGNEDRGGIQELIGLIKHTKIPIICMCNDRNHPKIRSLVHYCFDLRFQRP
RVEQIKGAMMSIAYKEGLKIPPPAMNEIILGANQDIRQVLHNLSMWCARSKALTYDQAKA
DSHRAKKDIKMGPFDVARKVFAAGEETAHMSLMDKSDLFFHDYSIAPLFVQENYLHVKPV
AAGGDMKKHLMLLSRAADSICDGDLVDSQIRSKQNWSLLPTQAIYASVLPGELMRGYMTQ
FPSFPSWLGKHSTTGRHDRLVQDLALHMSLRTYSSKRTVNMDYLSHIRDALVRPLTSQGV
EGVQHVVALMDAYYLMKEDFENIMDISSWGGKPSPFSKLDPKVKAAFTRAYNKEAHLTPY
ALQVVRASRSSTGPVLDPEDNEELQEDDSQSDEKDQDGLENDAMIKKKTKSSKSSKPEKD
KESKKGKGKSLKK
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
atggatattcggaaattctttggagttataccaagtgggaaaaaagctgtaaacgaaact
gtaaagaagaatgagaaaaccaagtctgctgaagaaactttaaaatcaaagaaaggaata
aaggaaatcaaggtaaatagctcttgtaaagaagatgcctccaaacagaaacaaactaac
aggaaaaagaggatcatctatgattcagattcagaatcagaagagacaatgcaggtaaaa
aatgccaaaaagcaatcagaaaaattgccattgtcttctaaacccagtaaaattttacgt
caggacccggttacatatgtttcagaaacagatgaagatgatgactttttgagtaagaag
acagcctcaaaatcaaaagaaaatggaagatctaaaaatagttaccttggagtatcaaac
atgaaaaagaatgaagaaaatactaagattaagaacaagcctttatcaccaataaggctt
acaccaacatccgtgcttgattattttggaactggaagtgttcgaaggtcagataagaag
atggtggcaagcaaaagaaaagaaccttccccaaatacagatgattccagattaaatgat
gaagccattgccaagcagttacaacttgatgaagatgcagagctggagaggcaattgcat
gaagatgaagagtttgccagaacgttagcaatgttggatgaagagcccaagaccaaaaag
gtccagaaggtctcaggagaaggagaagcattttcatctgtccaagataatttaaataaa
gcagaacatacatatcctcatacagtaaaaacagaacaattgtcaaatgagagaaagagc
tacagtcccaataaacaaactaagtgtgaacactcaaagaaatctcagcaatattccaag
tcatcagctcacaaaacaggagagtccttttctccaaagaacagttctaagctagcactc
acgcagataaaagaagagcgttcttataaagaatcagagtctgtggcctcaaaaagaaaa
gaaaatgctattgaattgaaagaagagaaaaaaactcctcaaaaatccaaaaattctcct
gccaaaaaagagtctgtaagtccagaagatttagaaaagaaacgcactaattatcaagct
tatcgaagttacttaaatagagaaggtcccaaagctctgggctccaaagaaataccaaag
ggagctgaaaactgcttggaaggccttacatttgtgatcacaggagtcctggagtctatt
gaacgagatgaagccaagtctctaattgaacgttatgggggaaaagtaacaggaaatgtc
agcaagaaaaccaactaccttgtcatgggtcgtgatagtggacagtccaagagtgacaag
gcagcagctttggggacaaaaattattgatgaagatggcctattgaatttgattagaact
atgccaggcaaaaagtccaagtatgaaatagcagttgaagctgagatgaagaaagagaaa
accaaactggagaggacacccaaaaaaaataaccaaggaaaaagaaaaagtagtccaacc
aagaaggaatcagaatctaaaaagaacaagcttactcccaaaaaggacagccctaggaag
gcattaaaaaaggaaacaaaagaagcaaatgtgttcccaagaggcctggacttcagcaag
caggtggcccaggagacagatgatgacagccaggctagggatttggctgatgacagcagt
gaaaaccaagtggaaaatctgctctgggtggataaatacaagccaacctcgctcaagacc
ataattggacagcaaggtgaccaaagttgtgccaataagctgctccgctggcttcgaaac
tggcataagagttcgcctgaagagaaaaagcatgcagccaagttcggtaaatgtgctggc
aaagatgatggctctagttttaaggcagcgttgctctcaggccctccaggtgttggcaaa
accaccacagcctctttggtgtgtcaggaattgggatacagctatgtggaactaaatgct
agtgacacgcggagcaagaatagcttgaaggcgattgtagccgaatcactcaataatacc
agcatcacaggcttttattcaggtgggtcaggtggagccgcttcaggcagcacgaagcac
gcgctcatcatggatgaagtggatggcatggcaggcaatgaggacaggggagggattcag
gaattaattggcctgataaaacatactaaaattcccattatttgtatgtgcaatgataga
aaccatcccaagattcgctctttggttcattattgttttgatcttcgttttcaaagacct
cgggttgaacaaattaagggtgctatgatgtctattgcatataaagaaggtttaaagatc
ccccctccagcaatgaatgaaataattttgggagccaaccaagatatcagacaggtttta
cacaatctgagtatgtggtgtgcacgaagtaaggcactaacctatgaccaggccaaagct
gactctcatcgggccaagaaggatatcaaaatgggcccatttgatgttgcccggaaagtg
tttgcagctggagaggagactgcccacatgtcacttatggacaaatcagatctctttttt
catgactattcaatagcacccctctttgtccaggagaattacctacacgtgaagcctgta
gctgcggggggtgacatgaaaaagcacttgatgctgttgagccgagcggcagatagcata
tgtgatggcgacttagtggacagtcagatccggagtaagcaaaattggagccttctgccc
acccaagccatttatgccagtgttcttcctggagagctgatgagggggtacatgacccag
ttcccctccttccctagctggctggggaagcactcaactacaggcagacacgatcgcctg
gttcaggaccttgcactgcacatgagtcttcgaacttactccagcaaaaggactgtgaac
atggattatctgtctcacatccgggatgcacttgtacggcccctgacctcacagggtgta
gaaggagtgcagcatgtggttgcacttatggatgcatattacttgatgaaagaagacttt
gagaatatcatggacattagcagctggggtggcaaacctagtcccttttccaagctggac
cccaaggtgaaagcagccttcacaagagcttacaataaggaggcccacctcactccatat
gcgcttcaggtggtaagggcatctagatccagcacaggcccagttctggatcctgaagac
aatgaagagttacaggaagatgactctcagtctgatgagaaagaccaggatggtctagag
aatgatgctatgatcaagaaaaagacaaaatcttcaaagtcatcaaaaccagaaaaagat
aaagaatcaaaaaaaggaaaagggaaaagtttgaagaaatga
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