Dipodomys spectabilis (banner-tailed kangaroo rat): 122107003
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Entry
122107003 CDS
T07891
Symbol
Cdkal1
Name
(RefSeq) threonylcarbamoyladenosine tRNA methylthiotransferase
KO
K15865
threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1 [EC:
2.8.4.5
]
Organism
dsp
Dipodomys spectabilis (banner-tailed kangaroo rat)
Brite
KEGG Orthology (KO) [BR:
dsp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dsp03016
]
122107003 (Cdkal1)
Enzymes [BR:
dsp01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.5 tRNA (N6-L-threonylcarbamoyladenosine37-C2)-methylthiotransferase
122107003 (Cdkal1)
Transfer RNA biogenesis [BR:
dsp03016
]
Eukaryotic type
tRNA modification factors
Methylthiotransferase
122107003 (Cdkal1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF0004
Radical_SAM
TRAM
Motif
Other DBs
NCBI-GeneID:
122107003
NCBI-ProteinID:
XP_042534489
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All DBs
Position
Unknown
AA seq
578 aa
AA seq
DB search
MPSASCDTLLDDIEDIVSQEDSKPQDRHFSRKHVVPKVRKRNTQMYSQEENSPPSDSIIP
GIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHFRN
SIKKAQEENKKVVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQ
KKDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVDR
AKQSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLVEVIPEGAMLRLGMTNPPYILEH
LEEMAKILNHPRVYAFLHIPVQSASDSVLMDMRREYCVADFKRVVDFLKEKVPGITIATD
IICGFPGETDQDFQETVKLVEEYRFPSLFINQFYPRPGTPAAKAEQVPAQVKKQRTKDLS
QVFHSYNPYDHKIGERQHVLVTEESFDSKFYVAHNQFYEQVLVPKDPSFMGKMVEVDIYE
SGKHFMKGQPVLDAKVYTPSISKPLVKGEVSGLTKEFRNRRGNHAGSASYTSTETQPTSA
GSRVALHLQRLHQDCALRTAAALALLAFLLAFLAKVYN
NT seq
1737 nt
NT seq
+upstream
nt +downstream
nt
atgccttctgcatcctgcgatacactcctcgatgacattgaagatattgtgtcacaggaa
gactcaaaaccacaagatcggcatttttcaagaaagcatgttgttcccaaggtgcgaaag
cgaaatacgcaaatgtattcacaagaagaaaacagtccaccaagtgacagcattattcca
ggcatccagaaaatttggatacgaacatggggttgttcacataataattcagatggagaa
tatatggctggacaactagctgcttatggctataaaattacagaaaatgcatcagatgca
gatttatggctcctgaatagttgcactgtgaaaaacccagctgaagaccactttagaaac
tcaatcaagaaagctcaagaggagaacaaaaaagtagtgcttgctggctgtgttcctcaa
gcccagccccgccaggactacctcaaaggactaagtatcattggggttcaacagatagat
cgggtggtggaggttgtggaggaaacaattaaaggtcactctgtgagactgttgggccag
aagaaggataatggaaagcggttggggggagcacggttggatttgccaaagattaggaag
aatccactgatagaaataatttccatcaacactgggtgtctcaatgcttgtacctactgc
aaaactaaacatgccagaggaaatttggccagttatccaatcgatgaactagtagataga
gccaagcaatcttttcaagagggtgtttgtgagatctggttgaccagtgaagacacgggg
gcctatggcagagatattggcactgacctccccacactcctatggaagctggtggaagtg
attcctgaaggagcgatgctcaggcttggcatgacaaatccaccctatattttagagcat
ctggaggaaatggcgaaaatccttaatcaccccagagtgtatgccttcctgcacattccg
gtccagtctgcctctgacagcgtgctcatggatatgagaagggagtactgtgtggcggac
ttcaaaagagtggtggattttctgaaggagaaggttcctggaataacaattgctacagat
attatctgtggttttcctggagaaacagatcaggattttcaagaaacagtgaaacttgtg
gaggagtacagattcccaagtctctttattaaccagttttatccaagaccaggaactcct
gctgcaaaggcagaacaagtcccggcacaagtgaaaaagcagaggacaaaagatctttct
caagtatttcattcttacaatccatatgaccacaagataggtgaaagacaacacgtgtta
gtaacagaagaatcttttgattccaagttttatgttgcacacaatcaattttacgaacag
gtgttagtgccaaaggacccttcattcatggggaaaatggttgaagtggacatttacgaa
tcaggaaaacattttatgaagggccagccagtattggacgccaaagtatacacaccatcc
atcagcaaaccactggtgaagggagaagtctcaggtttaacaaaggaattcagaaatagg
cgtgggaatcacgcaggttcggcatcctacacctctactgaaactcagcccacctcagca
ggctccagagtggcgctgcacctgcaaagactccatcaagactgtgcactgaggacagca
gcggctctcgccttgcttgcgtttcttcttgcttttcttgccaaggtctacaattag
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