Dipodomys spectabilis (banner-tailed kangaroo rat): 122107145
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Entry
122107145 CDS
T07891
Symbol
Rc3h2
Name
(RefSeq) roquin-2 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
dsp
Dipodomys spectabilis (banner-tailed kangaroo rat)
Brite
KEGG Orthology (KO) [BR:
dsp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
dsp03000
]
122107145 (Rc3h2)
04121 Ubiquitin system [BR:
dsp04121
]
122107145 (Rc3h2)
Transcription factors [BR:
dsp03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
122107145 (Rc3h2)
Ubiquitin system [BR:
dsp04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
122107145 (Rc3h2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-CCCH
zf-RING_UBOX
zf-RING_2
zf-CCCH_4
zf-C3HC4_3
Prok-RING_4
zf-C3HC4
zf_CCCH_4
zf-C3HC4_4
Xin
zf-C3HC4_2
Motif
Other DBs
NCBI-GeneID:
122107145
NCBI-ProteinID:
XP_042534702
LinkDB
All DBs
Position
Unknown
AA seq
1188 aa
AA seq
DB search
MPVQAAQWTEFLSCPICYNEFDENVHKPISLGCSHTVCKTCLNKLHRKACPFDQTAINTD
IDVLPVNFALLQLVGAQVPDHQSIKLSNLGENKHYEVAKKCVEDLALYLKPLSGGKGVAS
LNQSALSRPMQRKLVTLVNCQLVEEEGRVRAMRAARSLGERTVTELILQHQNPQQLSANL
WAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKTSIG
HVVQLLYRASCFKVTKRDEDSSLMQLKEEFRSYEALRREHDAQIVHIAMEAGLRISPEQW
SSLLYGDLAHKSHMQSIIDKLQSPESFAKSVQELTIVLQRTGDPANLNRLRPHLELLANI
DPNPDAVSPTWEQLENAMVAVKTVVHGLVDFIQNYSRKGHETPQPQPNSKYKTSMCRDLR
QQGGCPRGTNCTFAHSQEELEKYRLRNKKINATVRTFPLLNKVGVNNTVPTTAGNVISVI
GSTETTGKIIPSTNGISNAENSVSQLIPRSTDNSLRTLETVKKVGKVGSNGQNPAGPSAE
SVTENKISSPPKTPVSNVAATSAGPSNAGTELNPVPPKSSPFLTRVPVYPQHSENIQYFQ
DPRTQIPFEVPQYPQTGYYPPPPTVPAGVAPCVPRFVRSSNVPESSLPPASMPYADHYST
FSPRERMNSSPYQPPPPQQYGPVPPVPSGMYAPVYDSRRIWRPAMYQRDDIIRSNSLPPM
DVMHSSVYQPSLRERYNSLDGYYSVACQPPSEPRTTVPLPREPCGHLKTSCEEQIRRKPD
QWAQYHTQKAPVSSTLPVATQSPTPPSPLFSVDFRTDFSESVSGSKFEEDHLSHYSPWSC
GTIGSCINAIDSEPKDVIANSNAVLMDLDSGDVKRRVHLFETQRRTKEEDPIIPFSDGPI
ISKWGAISRSSRTGYHTTDPVQATASQGSATKPISVSDYVPYVNAVDSRWSSYGSEATSS
AHYVERDRFIVTELSGHRKHSSTGDLLSIELQQAKSNSLLLQREANALAMQQKWNSLDEG
RHLTLNLLSKEIELRNGESDYTEDAADTKPDRDIELELSALDTDEPDGQNEQIEEILDMQ
LGISSQNDHLLNGTAVENGHPVQQHQKESLKQKRQSLGEDHVILEEQKTILPVTSCFSQP
LPVSISNASCLPITTSVSVGNLVLKTHVMSEEKNDFLKPVANGKMVNS
NT seq
3567 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtgcaggcagctcaatggacagaatttctgtcctgtccaatctgctataatgaa
tttgatgagaatgtgcacaaacccatcagtttaggttgttcacacactgtttgcaagacc
tgcttgaataaacttcaccgaaaagcttgtccttttgaccagacagccatcaacacagac
attgatgtacttcctgtcaactttgcacttctccagttggttggagcccaggtaccagat
catcagtcaataaagttaagtaatctaggtgaaaataaacattatgaagttgcaaaaaaa
tgtgttgaagatttggcactctacttaaaaccactaagtggaggtaaaggtgtagctagt
ttgaaccagagtgcactgagtcgtccaatgcaaaggaaactagtgacacttgtgaactgt
caactggtggaggaagaaggtcgtgtcagagccatgcgagcagctcgttcacttggagaa
agaactgtaacagaactgatattacagcaccagaaccctcagcaattatctgccaatcta
tgggctgctgtcagggctcgaggatgccagtttctagggccagctatgcaagaagaggcc
ttgaagttggtgttgctggcattagaagatggttctgccctctcaaggaaagttctggta
ctttttgttgtgcaaagactagaaccaagatttcctcaggcatcaaaaacaagtattggt
catgttgtgcaactactgtatcgagcttcttgttttaaggttaccaaaagggatgaagat
tcttccctaatgcagctaaaggaggaatttcggagttatgaggcattgcgcagagaacat
gatgcccaaattgttcatattgctatggaagcaggactccgtatttcacctgagcagtgg
tcttcgcttctgtatggtgacttggctcataaatcacacatgcagtctatcattgataag
ctgcaatctccagagtcatttgcaaaaagtgtccaggaattgacaattgtcttgcaacga
acaggtgacccggctaacttaaatagactgaggcctcatttagagcttctagcaaacata
gaccctaatccagacgctgtttcaccaacttgggagcagctagaaaatgcaatggtagct
gttaaaacagtggttcatggtcttgtagacttcatacagaattatagtaggaaaggccat
gagacacctcagcctcagccaaatagcaaatataagactagcatgtgccgagatttgcga
cagcaaggaggttgtccacgaggaacaaattgtacatttgcccattctcaggaagagctt
gaaaagtatcgattaaggaacaaaaaaatcaatgcaactgtaagaacgtttcctctccta
aataaagttggtgtaaacaacactgtcccaaccacagccggaaatgtcatttctgtcata
ggaagtactgaaacaactgggaaaattattccaagtacaaatggaatttcaaatgcagaa
aacagtgtttcccagctaatcccacgcagtactgataattcattaagaactctggagact
gtgaagaaagtggggaaggttggctccaatggtcagaatcctgctgggccctctgcagag
tctgtaactgaaaataaaattagctctccacccaagactcctgtaagtaatgtagcagct
acctcagctgggccctctaatgctggaacagagctgaatcccgtgcctcccaagtccagc
ccattcctaactagagtaccagtatatcctcagcattctgaaaacattcagtattttcaa
gatccaaggactcagataccctttgaagtcccacagtacccacaaacaggatactaccca
ccacctccaacggtgccagctggtgtggctccttgtgttcctcgctttgtgaggtccagt
aatgttccagagtcctccctcccacctgcttccatgccatatgctgatcattacagtaca
ttctcccctcgagagcgaatgaattcttctccttaccagcctcctcctccgcagcagtat
ggaccagttcctccagtaccttccggaatgtatgctcctgtgtatgacagcaggcgcatc
tggcgccctgcaatgtatcaacgagatgacattattagaagcaattctttacctccaatg
gatgtgatgcactcatctgtctatcagccatctttgcgggaaagatataactcattagat
ggttattattcagtggcttgtcagccaccaagtgagccaaggacaactgtgcctttacca
agagaaccttgtggtcatttgaagaccagttgtgaagagcagataagaagaaagccagat
caatgggcacagtatcatactcagaaagcacctgtctcttcaactcttcctgtggcaaca
cagtcaccaacaccaccttctcctctattcagtgtagactttcgaacagatttttctgag
agtgtgagtggttcaaaatttgaagaagatcatctttcccattattctccttggtcttgt
ggcaccataggctcctgcatcaatgccatcgattcagaacccaaagatgtaattgctaat
tcaaatgctgtgttaatggatctggacagtggagatgttaagagacgagtgcatttattt
gaaactcagagaaggacaaaagaagaagacccaataattccgtttagcgatggacccatc
atctcaaaatggggtgcaatttcccgatcttcccgtacaggttaccatactacggatcct
gtccaggccactgcttcccaaggaagtgcaactaagcccattagcgtatcagattacgtc
ccttatgtcaacgctgttgattcaaggtggagttcttatggtagtgaggctacatcatca
gcacactatgttgaacgggacagatttattgttactgagttatctggtcatagaaagcat
tccagtactggagaccttttgagcattgaacttcagcaggccaaaagtaactcattactt
cttcagagggaggctaatgcattggccatgcaacagaagtggaattccttagatgaaggc
cgtcaccttaccttaaatcttctaagcaaggaaattgaactgagaaacggagagagtgat
tacacagaagatgctgccgatactaagcctgatagagatattgagttagaactttcagca
cttgatactgatgaacctgatggacaaaatgagcaaattgaagagatcctagacatgcaa
cttggtatcagttctcaaaatgatcatttgctgaatggaacagcagttgaaaatggccac
ccagtccagcagcaccagaaggagtcactgaaacagaagagacagagcttaggtgaagac
catgtgattctggaggagcaaaaaacaattcttccagtaacatcttgctttagccagcca
ctcccagtgtctattagcaatgcaagttgtctccccatcaccacatctgtcagtgttggc
aaccttgtcctgaaaactcatgttatgtctgaagagaaaaacgactttttaaaacctgtt
gcaaatgggaagatggttaacagctga
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integrated database retrieval system
