Dipodomys spectabilis (banner-tailed kangaroo rat): 122107222
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Entry
122107222 CDS
T07891
Symbol
Trmt13
Name
(RefSeq) tRNA:m(4)X modification enzyme TRM13 homolog isoform X1
KO
K15446
tRNA:m4X modification enzyme [EC:
2.1.1.225
]
Organism
dsp
Dipodomys spectabilis (banner-tailed kangaroo rat)
Brite
KEGG Orthology (KO) [BR:
dsp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dsp03016
]
122107222 (Trmt13)
Enzymes [BR:
dsp01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.225 tRNA:m4X modification enzyme
122107222 (Trmt13)
Transfer RNA biogenesis [BR:
dsp03016
]
Eukaryotic type
tRNA modification factors
Methyltransferases
122107222 (Trmt13)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TRM13
zf-TRM13_CCCH
zf-U11-48K
Methyltransf_32
OrgC
Motif
Other DBs
NCBI-GeneID:
122107222
NCBI-ProteinID:
XP_042534746
LinkDB
All DBs
Position
Unknown
AA seq
482 aa
AA seq
DB search
MMAASPPTPCAAGFPAEGRCGYYVEKKKRFCRMVAAAGKRFCGEHAGAAEEENSRKRILC
PLDPKHTVYEDQLAKHLKKCNAREKPKPDFFIQDINAGLKDDTEIPEQLVPISSLSEEQL
GNLINKLRKASEGLSSTLNDHIMSHPALHDAINDPRNGDSATKHLKQQASILGNIEKLQL
LGPRRCFVEFGAGKGKLSHWVDVALKDAEKVHFILVEKVTTRFKVDGKHRKKNSVFERLQ
IDIQHLCLNKIPVLREGKLPVVGIGKHLCGVATDLALRCLVETYAACYEKRNEEPLAKRI
KNDKTENEINTLAKEGSENNVPEKWTPVAGIVIALCCHHRCEWRHYVGKEYFRGLGLGAV
EFHYFQRMSSWATCGMRKAPLEDTAVTTKSKDHQSDDSEEHDDGEYRIRDDSTDNLPGIL
TVEEKKKIGHLCKLLIDQGRVQYLQHKGFSPALQNYIDPLVSLENVLLTALPIPSSSLQT
TG
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgatggcggcctctccgccgactccgtgcgctgcggggtttccagccgaggggagatgc
gggtactacgtggaaaagaagaagcggttctgcaggatggtggcggccgcggggaagagg
ttctgcggcgagcacgccggcgccgcggaggaagaaaattctcgaaaaagaatcctgtgt
cctttagatccaaaacacacagtatatgaagatcaactagcaaagcatttgaaaaaatgt
aatgcaagagagaagccaaagcctgatttctttattcaagatattaatgcaggcttaaaa
gatgatacagaaatacctgaacaattagttcccatttcttctctatcagaagagcagttg
ggaaacttaattaacaaattgagaaaagcaagtgaaggtttgagttccacacttaatgat
cacatcatgtctcacccagcattacatgatgccattaatgaccctagaaatggggattct
gcaaccaagcacttgaaacaacaggcttctattttaggtaacattgaaaaattacagtta
cttggtccaagaagatgctttgttgagtttggagcaggcaagggaaaattatctcattgg
gttgatgttgccttaaaagatgctgaaaaagttcacttcatcctcgtagaaaaagtaact
acaagattcaaggtggatggtaaacacagaaagaaaaattcagtgttcgaaagacttcaa
attgatattcagcacttatgtttgaacaagattcctgttctaagagaagggaaactacct
gtagtaggaattggaaagcatctgtgtggtgtggcaacagatcttgcattacgatgtttg
gttgaaacctatgctgcctgttatgagaaaaggaatgaagaacctttagccaaacgcata
aagaatgataaaacagaaaatgaaattaacactttggccaaggaaggaagtgaaaataat
gtcccagagaagtggacccctgtggctggcattgttattgcactctgttgtcaccacagg
tgtgaatggagacattatgtgggcaaagaatatttcaggggtctaggccttggagcagtg
gaattccactatttccagcgaatgagtagttgggcgacttgtgggatgcggaaagcgcct
ttggaagacacagctgttactacaaagagcaaagatcatcaaagtgatgacagtgaagaa
catgatgatggagaatataggatcagagatgacagcactgacaatttgcctgggattctc
actgttgaagaaaagaagaagatagggcatctttgtaaactgctgattgaccaaggccga
gttcagtatttacagcacaagggattcagtcctgctttacagaactatatagaccctttg
gtgtctctggaaaatgtattgttaacggctttaccaattccttcttcttcactacaaaca
actggttaa
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