Dipodomys spectabilis (banner-tailed kangaroo rat): 122107224
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Entry
122107224 CDS
T07891
Symbol
Col6a3
Name
(RefSeq) collagen alpha-3(VI) chain
KO
K06238
collagen type VI alpha
Organism
dsp
Dipodomys spectabilis (banner-tailed kangaroo rat)
Pathway
dsp04151
PI3K-Akt signaling pathway
dsp04510
Focal adhesion
dsp04512
ECM-receptor interaction
dsp04820
Cytoskeleton in muscle cells
dsp04974
Protein digestion and absorption
dsp05165
Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:
dsp00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
122107224 (Col6a3)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
122107224 (Col6a3)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
122107224 (Col6a3)
09142 Cell motility
04820 Cytoskeleton in muscle cells
122107224 (Col6a3)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
122107224 (Col6a3)
09160 Human Diseases
09172 Infectious disease: viral
05165 Human papillomavirus infection
122107224 (Col6a3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
dsp04147
]
122107224 (Col6a3)
00536 Glycosaminoglycan binding proteins [BR:
dsp00536
]
122107224 (Col6a3)
Exosome [BR:
dsp04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
122107224 (Col6a3)
Glycosaminoglycan binding proteins [BR:
dsp00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
122107224 (Col6a3)
Hyaluronan
Extracellular matrix or blood plasma proteins
122107224 (Col6a3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VWA
VWA_2
Collagen
VWA_3
Kunitz_BPTI
fn3
Motif
Other DBs
NCBI-GeneID:
122107224
NCBI-ProteinID:
XP_042534747
LinkDB
All DBs
Position
Unknown
AA seq
2998 aa
AA seq
DB search
MRKHRHLPLVAIFCLLFSGFSMTYAQQQHAAQDSADIIFLIDGSNNTGGVHFAVIRNFLV
NLLERLPLGTQQMRVGVVQYSDEPRTMFSLGSFSSKAQALEAVKALEFAGGELANIGLAL
DFVVENHFTPAGGSRVEEGVPQVLVLISAGPSSDEIRDAVIALKQASVFSFCLGAQAASR
AELQHIATDDNLVFTVPEFRSFGDLQEQLLPYIVGVAQRHIVLQPPTIVTQVIEVNKRDI
VFLMDGSSNLGLANFNAIRDFIARVIQRLEIGQDLIQVAVAQYADTVKPEFYFNSYPGKR
EMISAVRRMKPLEGSALYTGSALDFVRDKLFTSSAGYRAAEAVPKLLVLITGGKSLDEIS
QPAQELKRNSIMAFAIGSKAADQAELEEIAFDSSLVFVPAEFRAAPLQSMLPSLLAPLRT
LSGTSEVHVNKRDIIFLLDGSVNVGKTNFPYVRDFVMNLVNSLDVGSDNIRVGLVQFSDT
PVTEFSLDTYQSKPELLAHLRRFQLRGGSGLNTGAALSYVQANHFTEAGGSRIREHVPQL
LLLLTAGRSEDSYLQAANALARAGVLTFCVGASRADRAELEQMAFNPSLVYLMDDFSSLP
ALPQQLIQPLTTYVSGGVEEVPLTQPESKRDILFLFDGSANVMGQFPALRDFLYKVIDEL
DVKPDGTRVAVAQFSDDVRVESRFNQHLNKAEILNLVKKMKVKTGRTLNLGYALDYAQRH
IFVKSAGSRVEDGVLQFLVLLVAGRSADAVDGPASSLRQSGVVPFIFQAKNADPAELEQI
VPSPAFILTAESLPKIGDLQSQIVSLLKSVNNGAPAPVSGEKDVVFLIDGSEGVRSGFSL
LKDFMQRVVESLDVGPDRVRVAVVQYSDRTRPEFYLNSHMDQQGVINAIRRLTLLGGPTP
NTGAALDFVLRHILTSSTGSRMAEGVPQLLIVLTAERSGDDVRGPSVVLKKGGAVPIGIG
IGNADIAEMQMISYIPDFAVAIPTFRELGTVQQVISERVTQLSREELKQLQPVFLPPSGP
DVGSKKDVVFLIDGSQNASPEFQYIRTLIERMVNYLDVGFDTTRVAVIQFSEDPKVEFPL
NAHSSKDEVQSAVRRLRPKGGQQANIGGALEYVLKNIFKRPLGSRIEEGVPQFLVLISSR
KSDDEVDDAAVELKQFGVAPFTIARHSDQEELVKISLSPEYVFSVSTFRELPTLEQKLLT
PITTLTAEQIQQILSRTRFPPPAVESGVADIVFLIDSSDSVRPDGIAHIRDFVSRIVRRL
NIGPNKVRIGVVQFSNDVFPEFYLKTYKSQATVLDAIRRLRFKGGSPLNTGKALEFVARN
LFVKSAGSRIEDGVPQHLVLFLGGKSQDDVSRFSQIISSSGIASLGIGDRNTDRTELQTI
TNDPRLVFTVREFRELPNIEERVVSSLGPSGATPAPPGVGPPSPSRPEKKQADIVFLLDG
SINFRRDSFQEVLRFVAEIVDTVYEEGDSIQVGLVQYNSDPTDEFFLKDFSTKRQIIDAI
NKVVYKGGRHANTRVGIEHLRLNHFVPEAGSRLDQRVPQIAFVITGGKSVEDAQDVSLAL
TQKGVKVFAVGVRNIDSEEVGKIASNSATAFRVGNVQELSELSEQVLETLHDAMHETLCP
GVTDVSKACNVEVILGFDGSRGQNVFMAQRGLESKVDDILNRISQMQRISCSGSQLPVVR
VSVVANTPTGPVEAFDFAEYQPELFEKVRGMRNQQTYVLTADTLKLYQNKFRQSSPDSVK
VVIHFSDGVDGDLADLHRASEELRQEGVRTLILVGLERVSHMDQLSQLEFGRGFMYNRPL
SLNLLDLDYELAEQLDNIAEKACCGVPCKCSGERGDRGPIGSIGPKGIAGEDGYRGYPGD
EGGPGERGPPGVNGTQGFQGCPGQRGVKGSRGFPGEKGELGEIGLDGLDGEEGDKGLPGS
SGEKGSLGRRGDKGPKGDKGERGDVGIRGDPGDSGRDSQQKGPKGETGDIGPMGLPGRDG
VAGSPGEPGKNGGFGRRGPVGAKGNRGGPGQPGFEGEQGARGAQGPPGPIGPPGLMGEQG
IPGSRGGGGTAGAPGERGRTGPLGRKGEPGEPGPKGGIGSRGPRGETGDDGRDGVGGEGR
RGKKGERGFPGYPGPKGTPGEPGTDGAPGPKGVRGRRGNSGPPGAVGQKGDPGYPGPSGH
KGNRGDSVDQCALIQNIKDKCPCCYGPLECPVFPTELAFALDTSEGVTQDTFSRMRDVVL
KIVGDLTIAESNCPRGARVAVVTYNNEVTTEIRFADSTKKSALLDSIKNLQVALTSKQQS
LETAMSFVARNTYKRVRSGFLMRKVAIFFSNKATRDTPQLQEAVLKLSDAGITPLFLTSQ
EDRQLVNALQINNTAVGHALVLPARRDLTDFLKNILTCHVCLDICNIDPSCGFGSWRPVF
RDRRAAGSNVDVDLAFILDGSESTTLFQFNEMKKYIGYLVRQLELSPDPKGSQHFARVAV
VQHAPYESVGNASLLPVKVEFSLTDYSSKKNLLDFLSRGMRQLQGRSDLGSAVEYTVENV
FESAPNPRDLKIVVLMLTGQLQKQQVEEAQKAILRAKCKGYFFVVLGIGRKVNVKEVYSF
ASEPNDVFFKLVDKSTELNEEPLMRFGRLLPSFVGSKHAFYLSPDIKKQCDWFQGDQPVN
NGVKFGHKQVNIPNNVTSSPTMKPVTTTTPTTIVSLPPAKPAPAKPAAPSTATVRPAVAA
KPAASKPAVAKPSVVRPPAVAAARPAPPKPEAPRPPQPKPVATKPETKPASTKPEAKPTS
IKPETKPASTKTEAKPASTKTEAKPAATKPEAPRPQAKPAVTKPATAKPVVQASREVQVS
EITENSAKLSWERPEPPSSYFYDLTVTSAHDQSLVLRQNLTVTSRIVGGLRAGQTYHVAV
VCSLRSQVRAFYQGSFSTQKTQPPPVQSVQTASSSTTNLIVNTKPLDFTQTDICMLPKDT
GTCRKFVVAWYYDYHNKSCGRFWFGGCGGNENRFDSQEACEAVCAPGLTKPVINVIGT
NT seq
8997 nt
NT seq
+upstream
nt +downstream
nt
atgaggaaacatcgacatttgcccttagtggccatcttttgcctccttttctcaggcttt
tccatgacttatgcccaacagcagcatgcagcacaagactctgctgacattattttcctt
attgacggatcaaacaacaccggaggtgtccatttcgctgtcattcgcaacttccttgta
aatctccttgagaggctcccccttggaacccagcagatgcgagtgggggtggtgcagtat
agtgatgagcccaggaccatgttctccttgggcagcttctcttccaaggctcaggctctg
gaagcagtgaaggccttggagtttgctgggggggagctggccaatattggcctggccctt
gactttgtggtggagaaccacttcacgccggcagggggcagccgcgtggaggaaggggtg
ccgcaggtgctggtgctcatcagtgccgggccgtctagcgatgagattcgggatgccgtg
atagctctgaagcaggctagcgtgttctcattctgcctcggagcccaggccgcctccagg
gcagagcttcaacacatagctaccgatgacaacctggtgtttactgtcccggaattccgt
agctttggggacctccaggagcaattactgccctacattgttggcgtggcccaaaggcac
attgtcttgcaaccgccaacgattgtcactcaagtcattgaagtcaacaagagggacata
gtcttcctgatggatggctcatccaacttggggctggccaacttcaatgccatccgagac
ttcattgccagagtcatccagaggctggagatcggacaggaccttatccaagtggcagtg
gcgcagtacgcagacactgtcaagcccgagttttatttcaatagctatcctggcaaaaga
gagatgatatcagctgtgcggcggatgaagcctctggaaggctcggccctgtacacgggg
tccgctctggacttcgttcgtgacaagctattcactagctcggctggctaccgggctgcg
gaagcggtccccaagctcctggtgctcatcacaggtggcaagtccctagatgagatcagc
cagcctgcccaggagctgaagaggaacagcatcatggcctttgccattgggagcaaggcg
gccgatcaggccgagctggaagagatcgctttcgactcctccctggtgttcgtccccgct
gagttccgcgctgcccctttgcaaagcatgctgcccagcctgctggcacctctcaggacc
ctttctggaacctctgaagttcacgtaaacaaaagggatatcatcttccttttggatgga
tcggtcaacgttggcaagaccaatttcccctacgtgcgcgactttgtaatgaacctagtt
aacagccttgatgttggaagtgacaatatccgtgtgggtctagtgcaatttagtgacact
ccggtcacggagttctctctggacacgtaccagagcaagccagagctgctggctcacttg
agacgctttcagctcagggggggctcgggcctgaacacgggggcggccctgagctacgtc
caggccaaccacttcaccgaggccggcggcagcaggatccgggaacacgtgccgcagctg
ctgctcctgctcacggccgggcggtctgaggactcctatttgcaagctgccaatgccctg
gcccgtgcgggcgtgctgaccttctgtgtgggggccagccgggccgacagggcagagctt
gagcagatggcttttaacccaagcctggtgtacctcatggacgatttcagctccctgccg
gctctgcctcagcagctgattcagcccctaaccacgtatgttagtggaggggtggaggaa
gttccactcacccagccagagagcaagcgagacatcctgttcctctttgacggctcagcc
aacgtcatgggccagttccccgccctccgggactttctctacaaggtcatcgacgagctg
gacgtgaagccggatgggacccgggtggccgtggcgcagttcagcgacgacgtccgggtg
gaatctcgcttcaaccagcacctgaacaaggcagagatcctgaatctcgtgaagaagatg
aaggtgaagacgggcaggaccctcaacctgggctacgccctggactacgcgcagaggcac
atcttcgtgaagtccgcgggcagccgtgtggaggacggcgtgcttcagttcctggtgctc
ctggtggccgggaggtcggccgatgccgtggacgggccggcgagcagcctgcggcagagc
ggggtggtgcccttcattttccaagccaagaacgcggaccctgcggagctggagcagatc
gtgccgtcccccgccttcatcctcacagcggagtcgctccccaagatcggtgacctccag
tcgcagatcgtcagcctcttgaagtcagtgaacaacggagccccagctccagtttcaggc
gagaaggatgtggtgtttctgatcgacggctctgagggcgtcaggagtgggttttccctg
ctgaaggacttcatgcagagggtggtagagagcctggatgtgggtcctgaccgtgtgcgc
gtggccgtggtgcagtacagcgaccggacgaggcccgagttctacttgaattcccacatg
gaccaacagggcgtcatcaacgccattcgcaggctgaccctgctgggtgggccgaccccc
aacacaggggcggccctggacttcgtcctgaggcacattctgaccagctcaactggaagc
aggatggcggagggtgtcccccagctcctgatcgtgctcacggccgagcggtctggggac
gacgtgaggggcccctcggtggtcctgaagaagggcggtgcggtgcctatcggcatcggc
atcgggaatgccgacatcgccgagatgcagatgatctcctacatcccggacttcgcggtg
gccatccctaccttccgggagctgggcacggtccagcaggtcatctccgagcgggtgacc
cagctcagccgtgaggagctgaagcagttgcagcctgttttcctgcccccgtccggccca
gatgttggtagcaagaaagacgtggtcttcctcattgatgggtctcaaaacgccagcccc
gagttccagtacatccgcacgctgattgagaggatggtcaactacctggacgtgggcttt
gacaccacccgcgtggcagtgatccagttcagcgaggatcccaaggtggagtttccgctg
aacgcgcactccagcaaggacgaagtgcagagcgccgtgcgcaggctgaggcccaagggc
gggcagcaggcgaacatcggcggtgccctggagtatgtgctgaagaacatcttcaagagg
cccctgggcagccggatcgaggagggcgtcccgcagttcctggtgctcatctcctccagg
aagtctgacgatgaagtggacgacgcggctgtggagctcaagcagttcggggtggcccct
ttcaccatagccaggcactccgaccaggaggagctggtgaagatctccctgagccccgag
tacgtgttctcggtcagcaccttccgggagctgcccaccctggagcagaaactgctgaca
cccatcaccaccctgacggccgagcagatccagcagatcctgtccagaactcgcttccct
cccccagcagtggagagtggcgtggctgacatagtgttcctcatcgacagctctgacagc
gtgagacccgacggcatcgctcacattcgagacttcgtcagcaggattgtccgaagactt
aacattggccccaataaagtgaggatcggggtcgtgcagttcagcaacgacgtcttccca
gaattttacctgaagacctacaaatcccaggccaccgtgctcgacgccatacggcgcctg
cggttcaaagggggctctccactgaacaccgggaaagccctggagtttgtagcaaggaac
ctgtttgtgaagtcggctgggagccggatagaagatggggttccccaacacctggtcctg
tttctgggtgggaaatcccaggatgatgtttccaggttctcccagatcatcagctcctca
gggattgcgagtttaggaatcggagaccggaacactgacagaacagaactgcagaccatc
accaacgacccccggctggtcttcacggtgcgggagttccgggagctccccaacatagaa
gagagggtggtgagctcgttaggaccctctggagccacgcctgcgcctccaggggtaggc
ccgccctctccttcaagaccagagaagaagcaagcagacattgtgttcttgttggatgga
tccatcaatttcaggagggacagcttccaggaagtgctccgttttgtagctgaaattgtg
gacacggtttatgaagagggtgactccatccaagtaggattggtccagtacaattctgac
cccacggatgaattcttcttgaaagatttctccaccaagaggcagattatcgacgccatc
aacaaagtggtctacaaaggggggagacatgccaacaccagggtgggcatcgaacacctg
cggctcaatcactttgtgccagaggccggcagccgcctggaccagagagtccctcagatc
gccttcgtgatcaccggagggaagtcggtggaggacgctcaggacgtgagcctggcgctc
acccagaaaggggtcaaggtgtttgcagtgggtgtgaggaacattgactcggaggaggtg
ggaaagatagcttccaacagtgccacggccttccgagtgggcaacgtccaggagctgtcg
gagctgagtgagcaggtcttggaaacgctgcacgacgccatgcacgaaaccttatgtccc
ggtgtgaccgatgtttccaaagcttgtaatgtggaagtgattctagggttcgatggatcc
agaggtcagaatgtgtttatggcccagaggggccttgagtccaaggtggatgacatcttg
aatagaatcagtcagatgcaaagaatcagctgcagtggcagccagctgcccgtcgtgcgg
gtatcagtggtggccaacacgccaacgggacctgtggaggcctttgactttgccgagtac
cagccagaactgtttgagaaggtccgtggcatgcgcaaccagcagacatacgtcctcacg
gccgacacgctgaagctctaccagaacaagttccgacagtcctcgcccgacagcgtgaag
gtggtgattcatttttctgatggagtggacggagacctggctgacttacacagagcttcc
gaggagctccgacaagaaggtgtccggaccctgatcctggtgggtctggaacgggtctcc
cacatggaccagctgtcccagctggagtttggacggggcttcatgtacaaccggcccctg
agcctcaacttgcttgacttggactacgaacttgcggaacagctggacaacattgctgag
aaagcgtgctgtggggttccctgcaaatgctctggagagagaggagaccgtggacccatt
ggcagcattgggccgaagggcattgcgggagaagatggctaccgaggctatcctggagac
gagggcggccctggtgagcgaggtccgcctggtgtgaacggcactcaaggtttccagggc
tgtccgggccagagaggagtcaagggctctcgaggattcccaggagaaaagggtgaatta
ggagagatcgggctggatggtctcgacggtgaggagggagacaaaggcttgccgggttct
tctggagagaaagggagcctgggaaggcggggtgataaaggaccaaagggagacaaagga
gagagaggagatgttggaattcggggtgatccgggtgattctggacgcgacagccagcag
aaaggacccaaaggagagacgggtgacatcggccccatgggtcttccaggaagagacggt
gtagctggaagcccaggagaacctggcaagaatggaggctttggccgaaggggacccgtg
ggagctaagggaaaccgaggaggtccgggccagccaggattcgaaggagagcagggggcc
agaggagcccagggcccgcctggtcccattggtcctccaggcctgatgggggagcaaggc
atacctggatctcggggaggtggaggcaccgctggggctcccggagaacgtggcagaact
ggtcctctgggaagaaagggtgagcctggagagccaggacccaagggaggcatcgggagc
cgcggccctcggggggagacgggagatgatgggcgagatggagttggtggtgaaggacgc
agaggcaaaaaaggagaacgaggtttccccgggtacccaggaccaaagggtacccctggg
gagcccgggacagacggagcaccaggacccaaaggtgtcagaggccggaggggaaactca
ggacctccgggggcagtcggacagaagggagaccctggttacccaggaccatctggtcac
aaaggcaaccgtggtgactccgtggatcaatgtgccctcatccaaaacatcaaggataaa
tgcccttgctgctatggacccctggagtgccctgtcttcccgacagagcttgcgtttgcc
ttggacacctcggaaggggtcactcaagacacctttagccgcatgcgtgatgtagtgttg
aagatcgtgggcgatctgaccattgctgagagcaactgcccgcggggcgcccgggtggcc
gtggtcacctacaacaacgaggtgaccactgagatccgctttgctgactctacgaagaag
tccgccctcctggatagcatcaagaacctgcaggtggccctgacatccaagcagcagagt
ctggagaccgccatgtcatttgtggccagaaacacatacaagcgtgtgaggagcggattc
ctgatgaggaaagtggccattttcttcagcaacaaggccaccagagacactccgcagctc
caagaggctgtgctcaagctctccgatgcggggatcacacccttgttcctcacgagccag
gaagaccggcagctcgtcaatgccttgcagatcaataacaccgctgtggggcacgcgctt
gtcctgccggcgaggagggacctcacggacttcctgaagaacatcctcacttgccacgtt
tgcctggatatctgcaacatcgacccctcctgcggatttggcagctggcggccggtcttc
agggataggagagcagccggcagcaatgtggacgtggacttggctttcatcttggatggc
tcggagtccaccaccctgtttcagttcaacgagatgaagaaatacatcggttacctggtc
cggcagctggagctgagcccagaccccaaagggtcccagcactttgccagggtggctgtt
gtgcaacacgccccctacgaatctgtgggcaatgccagcctgctgccggtgaaggtggaa
ttctccctgacggactatagctctaagaagaatcttctggatttcctcagcaggggaatg
aggcagctacaaggcaggagtgacttgggcagcgccgttgaatacactgtagagaacgtc
tttgaaagtgcacccaaccctcgggacctgaaaattgtggtgctgatgctgactggccag
ctgcagaagcagcaggtggaggaggcccagaaagccatcctgagggccaagtgcaagggc
tacttcttcgtggttctgggcatcggcaggaaagtgaacgtcaaggaggtgtatagcttc
gccagtgagcccaacgacgtcttcttcaaactagtggataagtccaccgagctcaacgaa
gagcctttgatgcgatttgggaggctgctaccctcctttgtcggcagtaaacatgctttt
tacttgtctccagatatcaagaaacaatgtgattggttccaaggggaccaaccagtgaac
aatggtgtgaagtttggtcacaaacaagtaaacattccaaacaatgttacttcaagtcct
accatgaagcctgtgaccaccacaacacctaccactattgtcagtctgcctcccgcgaag
ccagctcccgcgaagccagcggcccccagcacagccacagtcaggcctgcagtggctgcg
aagccagcggcctcgaagcctgcagtggcaaagccatccgtggtgagaccgcctgccgtg
gctgccgcaaggccagcccctcccaagccagaggctcccaggccaccgcagcccaagccc
gttgctaccaaaccagaaaccaagccagcctcaaccaaaccagaagccaagccaacctct
atcaaaccagaaaccaaaccagcctctaccaaaacagaagccaagccagcctctaccaaa
acagaagccaaaccagctgccactaaaccagaggcccccaggccacaggccaaaccagcc
gtcaccaagccagccacggctaaacctgtagttcaagcgtcccgcgaagtccaggtgtca
gagatcacggagaacagtgccaaactctcctgggagaggcccgagccgcccagttcttac
ttttacgacctcaccgtcacctcggcccacgaccagtccctggttctgcggcagaacctc
acggtcaccagccgcatcgtcgggggcctgcgggcggggcagacgtaccacgtggcggtg
gtgtgctccttgcgctctcaggtccgggccttctaccagggcagcttcagcacgcagaaa
acccagcctccacctgtacagtcagtgcagacagcatctagttccaccaccaacctcata
gtgaacacgaaaccattggatttcactcaaacagatatatgtatgctgcccaaggacacg
ggaacatgcagaaaattcgtggtggcctggtactacgactatcacaacaaaagctgcggg
aggttttggtttggaggctgtgggggcaacgagaacagatttgactcacaggaagcatgc
gaagccgtctgtgctcctgggctcaccaaaccagtcatcaatgtgatcggcacctag
DBGET
integrated database retrieval system
