Dipodomys spectabilis (banner-tailed kangaroo rat): 122107363
Help
Entry
122107363 CDS
T07891
Symbol
Col4a3
Name
(RefSeq) collagen alpha-3(IV) chain
KO
K06237
collagen type IV alpha
Organism
dsp
Dipodomys spectabilis (banner-tailed kangaroo rat)
Pathway
dsp04151
PI3K-Akt signaling pathway
dsp04382
Cornified envelope formation
dsp04510
Focal adhesion
dsp04512
ECM-receptor interaction
dsp04820
Cytoskeleton in muscle cells
dsp04926
Relaxin signaling pathway
dsp04933
AGE-RAGE signaling pathway in diabetic complications
dsp04974
Protein digestion and absorption
dsp05146
Amoebiasis
dsp05165
Human papillomavirus infection
dsp05200
Pathways in cancer
dsp05222
Small cell lung cancer
Brite
KEGG Orthology (KO) [BR:
dsp00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
122107363 (Col4a3)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
122107363 (Col4a3)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
122107363 (Col4a3)
09142 Cell motility
04820 Cytoskeleton in muscle cells
122107363 (Col4a3)
09150 Organismal Systems
09152 Endocrine system
04926 Relaxin signaling pathway
122107363 (Col4a3)
09154 Digestive system
04974 Protein digestion and absorption
122107363 (Col4a3)
09158 Development and regeneration
04382 Cornified envelope formation
122107363 (Col4a3)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
122107363 (Col4a3)
09162 Cancer: specific types
05222 Small cell lung cancer
122107363 (Col4a3)
09172 Infectious disease: viral
05165 Human papillomavirus infection
122107363 (Col4a3)
09174 Infectious disease: parasitic
05146 Amoebiasis
122107363 (Col4a3)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
122107363 (Col4a3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
dsp04147
]
122107363 (Col4a3)
00536 Glycosaminoglycan binding proteins [BR:
dsp00536
]
122107363 (Col4a3)
Exosome [BR:
dsp04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
122107363 (Col4a3)
Glycosaminoglycan binding proteins [BR:
dsp00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
122107363 (Col4a3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
122107363
NCBI-ProteinID:
XP_042534958
LinkDB
All DBs
Position
Unknown
AA seq
1671 aa
AA seq
DB search
MRPAAAAAPRPTVGLALLLLLLAAPPVASKGCVCKDKGQCFCDGTKGEKGEKGFPGPPGF
PGQKGFPGPEGSPGPQGPKGSPGLPGLTGPKGVRGISGLPGYSGPPGLPGIPGNSGPYGL
PGLPGCNGSKGDQGFPGIPGTPGYPGVQGATGLKGQKGAPAQREDGEINGKGDPGVPGPP
GFQGLPGPPGFPGPPGPPGPPGIFGFPGAPGPRGPKGYMGDNVVGQKGERGIKGLTGPPG
PPGTVIVTLTGPENRTDLKGEKGDKGAAGEPGPPGPPGLPGESYGSEKGAPGEPGAQGKP
GKDGAPGFPGTEGAKGHRGFPGLRGEVGLKGWKGDPGPPGFRGPTEYYDTYWQKGDAGIP
GPPGPKGVRGLPGPSGPPGVPGSPGSSKPGPSGAPGWPGLKGSKGKRGAPGKDMVGLPGS
PGCPGTPGPPGSPGPPGPPGDVIFRKGPPGDRGPPGHPGSPGIPGVDGPKGEAGLVCTQC
SYIPGPPGLPGLPGFDGLKGIPGGQGPAGAKGSPGSPGSAGPPGFPGFPGALGAPGLKGE
KGETPQPQGQMGIPGEPGPRGPPGRKGSDGIPGSPGLKGSPGPKGDPALSGEKGDRGPPG
NPGSPGPPGPEGPAGPPGCGPQGEPGPKGTQGLPGAPGLPGKAGPKGEPSVSLPVPGPPG
PPGPPGRVGPRGPPGLPGSMGRCDPGLPGPEGEPGIPGIGLPGPPGPKGDRGLLGAKGPP
GYPGKMGEPGFPGDPGFPGAKGEPALARPGEPGKPGFPGERGNSGENGEIGLPGLPGVPG
LPGKDGLDGPRGDPGRAGPPGEKGPPGKCLEGPRGIPGLPGLNGLQGQPGQRGEPGPKGD
PGIPGLDRSGAPGEPGPPGVPGRQGEMGPPGQKGRPGAPGPSGLPGERGTVGMMGYPGTI
GLPGPPGEPGSPGQKGSLGTPGMKGTRGPPGAKGEQGEKGIPGPSRITQLKGDKGEPGLK
GFTGNPGEKGNRGTPGLPGLQGLPGPTGPPGPPGPRGDLGRTGNPGEAGPPGMAGGMGNM
GVPGSKGKQGTRGLPGLAGRPGLPGVPGLQGEKGEPGYSEGARPGPPGPTGDPGLPGDMG
KKGERGSPGPPGQAGPAGPEGAPGSPGVPGHPGKRGPDGQLGNKGVKGFRGPPGIKGPPG
LPGLPGSPGPVGMRGNQGRDGIPGPAGEKGETGLLGAYPGPRGNPGAQGAKGNKGAPGWP
GLPGQKGTMGDTGPPGPMGILGFPGPPGLPGAIIPGRKGNRGPPGSRGNPGEPGPPGPPG
SHIKGIKGDKGLMGQPGPKGLPGAVGDVGPPGHPGAPGDPGLPGPRGDPGFPGFPGMRGE
KGNPGFPGSIGPPGQVGLKGPPGPRGDPGTIKIISLPGSPGPSGPPGQPGMQGEPGLLGP
PGKPGPCGPKGIPGKDGKPGIPGPIGEKGNKGSKGKQGPPGFDGLPGLKGKPGDMGPPAT
GTTMTGFVFTRHSQTVVPPPCPEGTQPLYSGFSLLFVQGNERAHGQDLGTLGSCLQRFTP
MPFLFCNINNVCNFASRNDYSYWLSTPALMPMDMAPITGRALEPYISRCTVCEGPAVAIA
VHSQTTTIPPCPHGWISLWKGFSFLMFTSAGSEGAGQELASPGSCLEEFRASPFLECHGR
GTCNYYSNSYSFWLASLNPERMFRKPTPLTVKAGELERIISRCQVCMKKRH
NT seq
5016 nt
NT seq
+upstream
nt +downstream
nt
atgcgccccgcggcggcggcggcgccccggccgaccgtcgggctggcgctcctgctgctg
ctcctggcggccccgcccgtggcgagcaagggctgtgtctgcaaagataaaggccagtgc
ttctgtgatgggaccaaaggagagaagggggagaaaggctttcctggaccccctggtttt
cctggacagaaaggattcccaggccctgaaggctcgccaggaccccagggacccaagggc
tctccaggacttccaggactcactggtcccaaaggtgtcaggggaataagcggattgcca
gggtattcaggaccacctggacttccaggcattcctggcaattcagggccatacggactt
cctggtttaccaggatgcaatggttccaagggtgaccaagggttccctggcattccgggg
acaccaggctacccaggggtccagggtgctactggtttgaaaggacaaaagggtgctcct
gctcaaagagaagatggagaaatcaatggaaaaggagatccaggggtgcctggccctcca
ggattccagggtttgccaggccctcctggatttccaggacctcctggcccaccaggacct
cccggaatctttggctttccaggagctccgggaccaagaggacctaagggttatatgggt
gataacgtggttggacagaaaggagagcggggtataaaaggattaacaggacctcccgga
ccaccaggaactgttattgtgacactcaccggcccagaaaacagaacggacctcaagggg
gagaaaggagacaaaggagctgctggtgaacccggacctcctggacccccaggactgcct
ggagaatcctatggatctgaaaaaggtgctcccggagaacctggtgctcaggggaaacct
gggaaagacggtgctcctggcttccctggcactgagggagccaagggccacagaggcttc
cctgggttaaggggtgaagttggacttaagggatggaaaggagacccaggccctccagga
tttcgtggtccaacagaatattatgacacttactggcaaaagggagatgcaggaattcca
gggcccccagggcccaaaggagttcgtggcctaccaggtcccagtggcccccctggagtt
cctggaagtcctggatcatcaaagcctggccccagtggagcccctggatggccaggctta
aaaggaagtaaagggaagagaggagccccgggaaaggacatggtggggcttcccgggtct
ccaggctgtcctgggacaccagggcccccaggatcaccaggacctccaggacctccaggt
gatgtcatttttcgcaaaggtccacctggtgaccgtggaccgccaggccatccggggtcc
cctggcatcccaggagtcgatggccccaaaggagaagcaggccttgtgtgcacacagtgt
tcttatatcccagggccccctggtcttccaggattgccagggtttgatggtctcaaaggc
atcccaggaggacaaggtccggctggtgctaaaggaagcccagggtccccagggagtgca
ggtcccccaggatttccgggatttccaggtgccctgggtgctccaggacttaaaggagaa
aaaggtgaaacacctcagccccaggggcaaatgggcataccaggggagcctgggcccaga
ggaccaccaggaagaaagggctcggatggaattcctggatctccaggattaaaaggatca
ccaggacctaagggcgacccggccctgagtggagagaagggggaccgcggtcctccaggg
aatcctgggtcccctgggcctccaggacctgaaggaccagcaggaccacctggctgtgga
ccccagggagagccaggtccaaagggcacccaaggacttcctggagccccaggactgcct
ggaaaagccggtcctaagggagaacccagtgtttcactcccagtcccaggccccccagga
cctccagggccccctggccgcgtgggcccccgaggcccccctggtctccctggctccatg
ggaagatgtgatcctggtctccctggacctgaaggggaaccaggaatcccaggaatcgga
cttcctggacctccaggaccaaaaggagatcgaggcttgctaggagctaaaggaccccca
ggttaccctgggaaaatgggagaacctgggtttcctggagatccaggcttcccaggagcc
aagggggaaccagctctagccaggcctggagaaccaggaaaaccaggttttccaggagaa
agaggcaattctggggaaaatggagaaattggactccctggacttcctggcgtccctgga
cttccaggaaaagatgggctggatggacctcgaggagatccggggcgggccggaccacct
ggagaaaaaggacccccaggaaagtgcttagagggacccaggggcattccaggccttccc
ggcttaaatggactgcaaggacagccaggtcaaagaggtgaaccgggaccaaagggagac
ccgggcattccgggcttggataggtcaggagccccgggagaacctggacctcccggagtg
ccaggtcgccagggggagatgggaccaccaggccagaaaggacgtccaggtgccccagga
ccttcaggactcccaggtgaaagaggcacggttgggatgatgggctatcctgggaccatt
ggccttcctgggcctcctggggagccaggctcacccgggcaaaagggcagccttggaact
ccaggaatgaaaggcacaagaggacccccaggagccaaaggggaacaaggagaaaaagga
atccctgggccctctcgcataacccagttaaagggggacaaaggagaaccaggcctcaaa
ggatttacagggaatccaggtgagaaaggaaacagaggcactccgggcttgccaggctta
cagggtctcccaggacccactggaccaccaggaccaccaggcccgagaggagatttgggg
agaactgggaatcctggagaagcaggaccacctggcatggcgggcggcatggggaacatg
ggtgtaccaggttctaaaggaaaacaaggaaccagaggactcccaggtctagctggaaga
cctggcctccctggggttcctgggcttcaaggagaaaagggagagccaggctattcagaa
ggagcaaggccaggcccgccaggaccaacgggggatcctggactgccaggtgacatggga
aagaaaggagaaagagggtcacctggcccacctggacaggcggggcctgctggacctgag
ggagcccctgggagtcctggagttcctggccacccaggaaagcgaggccctgatggccaa
ttggggaacaaaggagtcaaaggcttccggggtcccccaggaatcaaaggccctccaggg
cttcctggattgccaggatctcctggaccagtggggatgagaggtaaccagggacgtgat
ggaattcctggtccagctggggaaaagggagaaacagggttgttgggggcctatccaggc
ccaagagggaatcctggtgcccagggtgccaaaggaaacaagggggctcctggctggccc
ggcctcccaggacagaaggggaccatgggagacaccgggcctccaggacccatgggcatc
ctaggattccccgggccacctggtctacctggggcaattatccctggtcgaaaaggaaat
cgagggccaccaggttccagaggaaatccaggtgagccaggtccccctggacctcctgga
agccacatcaagggcataaaaggtgacaaagggttgatgggccaacctggccccaaaggt
ctacctggggctgtaggagacgtggggccaccaggtcatccgggagcaccaggtgacccg
ggtctcccagggcccagaggcgatcctggatttcctgggtttccaggcatgagaggtgag
aagggcaatccgggatttccaggatcaattggacctccaggacaagttgggctgaaagga
ccacctggtccacgtggagaccctggcacaattaagatcatctcccttccgggaagccca
gggccttctggtccacctggacaaccaggaatgcaaggagaacctgggctgttggggcca
cccggaaaaccaggaccatgtggaccaaaaggtatacctggcaaagacggaaaaccagga
attcctggacccattggagaaaagggcaacaaaggttctaaaggaaagcaaggtccacct
ggattcgatggattgccaggactgaagggaaaaccgggagacatgggaccacctgcaacg
gggactacaatgacaggctttgtcttcacccggcacagtcagacagtggtgccgcctcca
tgtccagaaggaacacagccactctacagcggcttttcccttctctttgtacaagggaac
gaacgagcccatggacaagaccttggaactcttggcagttgcctgcagagatttacccca
atgccgttcttattctgtaacatcaataatgtatgcaatttcgcatctcgaaatgattat
tcatattggctgtcaacacccgctctgatgccaatggatatggctccaatcactggcagg
gccctagagccttatattagcagatgcaccgtctgtgaaggtcccgcggtagccatagcc
gttcacagccaaaccaccaccattccgccatgccctcatggctggatttctctctggaag
ggattttctttcctcatgttcacaagtgcaggctctgagggcgccgggcaagagctagcg
tctcctgggtcctgcttggaggaattccgagccagtccatttctagaatgccatggaaga
ggaacatgcaactactattccaattcctacagtttctggctggcttcattaaacccagaa
agaatgttcagaaaacctactccattaactgtgaaagctggggaattagaaagaataata
agccgctgtcaggtttgcatgaagaaaagacactga
DBGET
integrated database retrieval system
