Dipodomys spectabilis (banner-tailed kangaroo rat): 122107567
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Entry
122107567 CDS
T07891
Symbol
Col4a4
Name
(RefSeq) collagen alpha-4(IV) chain
KO
K06237
collagen type IV alpha
Organism
dsp
Dipodomys spectabilis (banner-tailed kangaroo rat)
Pathway
dsp04151
PI3K-Akt signaling pathway
dsp04382
Cornified envelope formation
dsp04510
Focal adhesion
dsp04512
ECM-receptor interaction
dsp04820
Cytoskeleton in muscle cells
dsp04926
Relaxin signaling pathway
dsp04933
AGE-RAGE signaling pathway in diabetic complications
dsp04974
Protein digestion and absorption
dsp05146
Amoebiasis
dsp05165
Human papillomavirus infection
dsp05200
Pathways in cancer
dsp05222
Small cell lung cancer
Brite
KEGG Orthology (KO) [BR:
dsp00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
122107567 (Col4a4)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
122107567 (Col4a4)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
122107567 (Col4a4)
09142 Cell motility
04820 Cytoskeleton in muscle cells
122107567 (Col4a4)
09150 Organismal Systems
09152 Endocrine system
04926 Relaxin signaling pathway
122107567 (Col4a4)
09154 Digestive system
04974 Protein digestion and absorption
122107567 (Col4a4)
09158 Development and regeneration
04382 Cornified envelope formation
122107567 (Col4a4)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
122107567 (Col4a4)
09162 Cancer: specific types
05222 Small cell lung cancer
122107567 (Col4a4)
09172 Infectious disease: viral
05165 Human papillomavirus infection
122107567 (Col4a4)
09174 Infectious disease: parasitic
05146 Amoebiasis
122107567 (Col4a4)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
122107567 (Col4a4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
dsp04147
]
122107567 (Col4a4)
00536 Glycosaminoglycan binding proteins [BR:
dsp00536
]
122107567 (Col4a4)
Exosome [BR:
dsp04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
122107567 (Col4a4)
Glycosaminoglycan binding proteins [BR:
dsp00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
122107567 (Col4a4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
122107567
NCBI-ProteinID:
XP_042535288
LinkDB
All DBs
Position
Unknown
AA seq
1683 aa
AA seq
DB search
MKLFLRWTKPLLTDSWSLVLILFSVQHTCGTGKKYVGPCGGRDCSVCLCFPEKGSRGQPG
PLGPQGPIGPLGPPGPPGIPGEKGLRGDAGPPGAVGEKGDKGPTGIPGFPGLGGIPGHPG
PPGSRGKPGLNGYNGSRGDPGFPGERGVPGLGGPPGLPGERGEKGNSVFIAGAIKGTQGD
PGDPGPPGLPGSRGPPGPVGPRGYPGAAGLTGPPGHPGSPGLKGNPGVGVKGQMGDPGEV
GQQGSPGPTLLIEPPDASLYKGEKGIKGLPGMIGLPGPPGPKGESGIGIKGEKGLPGFPG
PRGVPGSHGSPGFPGLKGEQGQIGEPGLFGLRGPKGDLGERGHPGPPGILVTPPVPLKGP
TGDPGCPGRQGEMGAIGPPGPPGPPGLPGVACPGITGPPGPPGFPGPPGLPGEAGVPGKP
DLAPGKPGHPGPPGLPGAPGQPGPPGSDVIQCSVSYPGPPGIKGIMGPPGRRGSKGEKGN
QGLCACKPGPMGPRGPPGPHGRQGSKGDLGLPGWLGEKGDPGLPGAEGSPGPPGKPGALG
PPGFKGTKGDMVVARVKGIKGERGPDGPLGFPGQRGQHGQDGRDGETGEPGPPGSHEDAI
PGAKGFPGPPGPPGKPGPMGPPGLGYPGPPGERGKLGLPGRPGVRGPDGSKGQKGDTILC
NVTYLGKPGPPGFDGPPGLKGFPGPPGAPGQRCLDGQKGQRGKPGASKIPGPPGLRGNMG
DPGFEGEKGSSPPGPPGPPGRRGVDGQKGIPGESAFGHPGPPGNRGLPGVPGMKGARGHP
GCPGAEGAAGVPGSPGLKGPKGREGSPGFPGIPGPPGQSCRKGSAGIPGQPGLPGAPGSP
GAPGWKGQRGEAGPSGPTGMKGFPGPPGLPGADGFLGPPGIPGPLGEDGLPGLPGPKGPR
GLPGFPGFPGERGLPGQEGLPGRKGEIGQKGWPGFGGDQGVRGAKGTRGPPGAAGEMAIF
LKKGKAGEPGPPGENGFPGARGDKGSAGLPGRRGEPGQHGPPGLHRGEPGKNGEPGLPGP
PGPPGLPGLRGVIGFPGLPGDQGEPGFPGPRGFSGNDGGRGPKGIKGDPASLYGLPGPKG
KPGSLGCPGHVGAPGERGLPGDQGPRGPPGRPGPPGSMGPPGCPGEQGLPGLEGQPGDMG
DLGPRGLPGNPGIPGPPGVKGPAGSPGLNGLHGLKGEKGSKGASGLYEMGPPGPMGLPGR
KGERGDPGSPGISPLGPIGEKGFPGPPGPPGPPGPAGAPGRAPEGDIPEQGPSGDQGPPG
PDGPRGEPGPPGPPGSVDLLKGDPGDYGLPGAPGSPGPPGPPGCQGIPGCDGKDGQKGPM
GFPGPPGPPGFPGPPGKKGLPGPPGRKGPLGPPGSRGEPGPPADADACPRIPGLPGVPGP
RGPEGAVGLPGQRGPPGPGCKGKPGLDGRRGQDGVPGPPGPPGHKGDTGETGCAGKPGPP
GLTGDPGPKGTGLGYLSGFLLVLHSQTDQEPACPVGMPRLWTGYSLLYMEGQEKAHNQDL
GLAGSCLPMFSTLPFAYCNIHQVCHYARRNDRSYWLASAAPLPMMPVSEEEIRPYISRCA
VCEAPAQAVAVHSQDQSIPPCPRAWRSLWIGYSFLMHTGAGDQGGGQALTSPGSCLEDFR
AAPFLECQGRQGTCHFFANEYSFWLTTVNPETQFSLAPSPDTLKEGQAQRQKISRCQVCV
KYS
NT seq
5052 nt
NT seq
+upstream
nt +downstream
nt
atgaagctttttctgagatggaccaagcccttgctcacagattcatggtcacttgtactt
attctgttttcggtgcaacacacgtgcgggactggcaagaaatatgtcggtccttgtgga
ggaagagattgctcagtttgcctgtgttttcctgagaagggatctcggggccaaccagga
ccactgggacctcagggtcccatagggcccctgggacccccaggaccccctgggattcca
ggagagaagggtctaaggggtgacgccggccctcctggagccgtgggggagaaaggagac
aagggtccaactggcattcctgggtttccaggtttgggcggaatacctggtcacccaggg
cctcctggatcgagaggaaaacctggcttgaatggctacaatggatcaagaggtgatcct
ggatttccaggagaaaggggagtaccaggcctcggaggcccccctggccttcctggagaa
cgtggtgaaaaaggaaattcagtgttcattgctggtgccattaaaggtactcagggagac
cccggggacccaggacctcctggcttaccaggatctaggggtccgccaggaccagtgggc
cccaggggctaccccggtgcagcggggctcacgggacctccgggtcatcctgggagccca
gggttgaagggcaatcctggtgtgggagtgaaagggcaaatgggagacccgggtgaagtt
ggccagcaaggttctcctggacccaccctattgatagaaccacccgatgcttctctctat
aaaggagaaaagggtataaaaggacttcctggaatgattggattaccaggaccaccagga
cccaagggagaatctggtattgggataaaaggagagaaaggtcttcctggattcccagga
cctcggggtgttcctggctcccatgggtcacctggttttccaggattaaagggagaacaa
ggacagattggagagcccgggctatttggattacgtggcccaaagggggaccttggagaa
cgtggacatccgggaccaccaggcattttggtaaccccgcccgtccctcttaaaggtcct
acaggggacccaggatgcccaggccgccagggagaaatgggagccataggaccaccaggt
cccccaggcccccccggcctaccaggggtggcttgtccaggcatcacggggcctcccggg
ccaccagggtttcctggtccaccaggccttcccggggaagctggggttcctggaaaaccg
gatttggctcctggaaaaccagggcatcccgggccgccaggccttccaggagcaccaggg
cagccgggacctccaggatcggatgtgatacagtgcagtgttagctaccctggaccacca
ggaataaagggtataatgggcccaccaggaagaagaggctccaaaggagagaaaggaaac
caaggactctgtgcctgcaaacctggccccatgggtccccgtggccccccagggcctcac
gggaggcaagggagtaaaggagacttagggctccctggctggcttggagaaaaaggtgat
ccaggcctacctggtgctgaaggctctccagggccccctggtaaacctggtgccctggga
ccccctggcttcaaaggaacaaagggtgacatggttgtagcaagagttaaagggatcaaa
ggagaaagaggacctgatgggcccctaggatttccaggccagcgaggacaacatggtcaa
gatggacgcgatggagaaacaggggagccaggacccccaggcagtcacgaagatgcaatc
ccaggtgctaaagggtttcctggaccaccaggccctccagggaaaccaggccccatgggg
cctccagggctgggataccctggtccaccaggagagagagggaaactgggactgccaggc
cgccctggtgtgaggggccctgatggctccaaggggcagaaaggtgataccattctttgt
aatgtgacctaccttgggaagcctggccctccaggttttgatggacctccaggtctgaag
ggatttcctggccccccaggtgctcctgggcagaggtgtttggatggacagaaaggccag
cggggcaagccaggagcatcaaaaataccaggcccacctggcttacgtggtaacatggga
gacccagggtttgaaggggagaaggggtcctctccccctggacccccaggtcctcccggc
agacgtggagtagatggtcagaaaggaatcccaggagagtctgcatttggtcacccagga
ccacctggaaataggggtctcccaggagtgccagggatgaagggagccagaggtcaccca
ggatgcccaggggctgaaggagcagctggcgttcccggctccccaggtctcaaaggcccc
aaaggcagagagggaagccctggcttcccaggtattccaggcccacctggccagtcctgt
agaaaaggcagtgcgggcatcccaggccagccagggcttcctggggctcctggtagtcca
ggtgccccaggttggaaaggccagagaggcgaagcagggccttctggacccactggaatg
aagggcttccctggacccccgggtctgcctggagccgatgggttcctaggacctccagga
atcccaggcccccttggggaagatgggttacctggtcttccaggcccaaaggggccccgg
ggcctgcctggtttccctggatttcctggggaaagaggacttccaggccaagagggtctg
cctggcagaaagggagaaattggacagaagggctggcctggttttggaggagaccaagga
gtaagaggtgccaaaggaacaagaggacctcctggagctgcaggagaaatggccatcttt
ttaaaaaaggggaaggctggggaaccaggacctcctggagagaatgggttcccaggagcg
agaggtgataaaggaagtgccgggctgccagggagaagaggagagccgggacaacacgga
ccacctggccttcacagaggggagcctgggaagaatggagagcctggactccctggaccc
cccggccctccgggcttacctgggctcagaggggtcattggtttcccaggattacccggg
gaccagggtgaaccaggtttcccaggcccacgtggattctcaggaaatgatggaggaaga
ggacccaaaggaatcaaaggtgaccctgccagtctgtatggtctaccagggccaaagggc
aagcctggcagccttggatgtccaggacatgttggagccccaggagagcgaggactgcct
ggagatcaagggccgagaggaccccctggaagaccaggaccacctggctccatgggaccc
ccagggtgtccaggtgaacaggggctgcctgggctggagggccaaccaggagacatggga
gaccttgggcctagaggtctcccagggaaccccggcattccaggtcctccaggagtgaaa
ggtcctgctgggtctcctggcctgaatggcttacatggtttgaagggtgaaaaaggaagc
aaaggtgcttcaggtttgtatgaaatgggtccaccaggcccaatgggactacctgggaga
aaaggggagagaggagaccccgggagccccggaatttctcctctaggtcctattggagaa
aaaggtttcccgggccccccagggccacccgggccacctggtcctgcaggtgctccagga
agagctccggagggtgacattcctgaacaaggcccatctggagatcagggacctcctggc
cctgatggtcccagaggagaacctgggcctccaggcccccctggaagtgtggatcttctg
aaaggcgatcctggtgactatggcttaccaggtgccccaggatccccaggcccaccaggt
cctcccggatgtcagggtattccaggatgcgatggaaaagacggccagaaaggaccaatg
ggatttccagggcctcctggccctcctggctttcctggcccacctggaaagaaaggttta
cctggacctccaggtagaaaagggcccctgggccctccaggctccagaggtgagcctgga
ccacctgcagatgcagatgcctgtccccgaatcccagggctccctggggtaccaggcccc
agaggaccagaaggggctgtgggactccctggacagagaggccctccaggaccaggatgc
aaaggaaagcctgggctggatgggaggaggggccaggatggtgttcctgggcctcccgga
cctcctggacacaaaggtgacaccggagagactggctgtgctggaaaaccaggccctcct
ggtctgactggtgatcctgggcccaaagggactggccttggctacctcagtggcttcctc
ctggttctccacagtcagacggaccaggaacctgcctgccctgtgggtatgccccggctc
tggactggatatagtctgttatacatggaaggacaggagaaagcccacaatcaagacctc
ggtctggcagggtcatgccttcccatgtttagcacgctgccctttgcctactgtaacatc
caccaagtgtgccactatgcgaggcgaaatgacaggtcatactggctggccagcgccgcg
cccctccccatgatgccagtctccgaggaagagattcgcccttacatcagccgctgtgcg
gtgtgcgaggccccggcccaggccgtcgcagtgcacagccaggatcagtccatcccgccg
tgccctcgggcctggaggagcctctggattgggtactcatttctgatgcacacgggtgct
ggggaccaaggaggcggccaggccctcacgtcacctggcagctgcctggaggatttcaga
gccgcgccattccttgaatgccaaggccgccaagggacttgccacttctttgcaaatgag
tatagtttctggctgacaacagtgaacccagagacacagttttctttggccccatcacca
gacaccttaaaagaaggccaggcccagcgccagaaaatcagcaggtgccaagtgtgtgtg
aagtatagctag
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integrated database retrieval system
