Dipodomys spectabilis (banner-tailed kangaroo rat): 122107844
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Entry
122107844 CDS
T07891
Symbol
Chd8
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 8 isoform X1
KO
K04494
chromodomain helicase DNA binding protein 8 [EC:5.6.2.-]
Organism
dsp
Dipodomys spectabilis (banner-tailed kangaroo rat)
Pathway
dsp04310
Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:
dsp00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
122107844 (Chd8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
dsp03036
]
122107844 (Chd8)
Chromosome and associated proteins [BR:
dsp03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
122107844 (Chd8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD6-9
Helicase_C
Chromo
BRK
ResIII
DEAD
HDA2-3
HTH_Hrp3
MUN
Myb_DNA-bind_7
Motif
Other DBs
NCBI-GeneID:
122107844
NCBI-ProteinID:
XP_042535600
LinkDB
All DBs
Position
Unknown
AA seq
2595 aa
AA seq
DB search
MKMADPIMDLFDDPNLFGLDSLTDDSFNQVTQDPIEEALGLPSSLDSLDQMNQDGGGGDV
GSSSASGLVPPPEETAPTELPKESTAPAPESLTLHDYTTQPTSQEQPAQPVLQTSTPTSG
LLQVSKSPEILSQGNPFMGVSATAVSSSNHGGQPPQSAPKIVILKAPPSSSVTGAHVAQI
QAQGITSTAQPLVAGTANGGKVTFTKVLTGTPLRPGVSIVSGNTVLAAKVPGNQAAVQRI
VQPSRPVKQLVLQPVKGSAPAGNPGAAGPPLKPAVTLTSTPTQGESKRITLVLQQPQSGG
PQGHRHVVLGSLPGKIVLQGNQLAALTQAKNAQGQPAKVVTIQLQVQQPQQKIQIVPQPP
SSQPQPQQSPSTQPLTLSSVQQAQIMGPGQSPGQRLSVPLKMVLQPQAGSSQGASSGLSV
VKVLSASEMAALSSPASSVPHTGGKTGMEENRRLEHQKKQEKANRIVAEAIARARARGEQ
NIPRVLNEDELPSVRPEEEGEKKRRKKNSGERLKEEKPKKSKTSGSSKTKGKSKLNTITP
VVGKKRKRNTSSDNSDVEVMPAQSPREDEESSIQKRRSNRQVKRKKYTEDLDIKITDDEE
EEEVDVTGPIKPEPILPEPVQEPDGETLPSMQFFVENPSEEDAAIVDKVLSMRVVKKELP
SGQYTEAEEFFVKYKNYSYLHCEWATISQLEKDKRIHQKLKRFKTKMAQMRHFFHEDEEP
FNPDYVEVDRILDESHSIDKDNGEPVIYYLVKWCSLPYEDSTWELKEDVDEGKIREFKRI
QSRHPELKRVNRPQANAWKKLELSHEYKNRNQLREYQLEGVNWLLFNWYNRQNCILADEM
GLGKTIQSIAFLQEVYNVGIHGPFLVIAPLSTITNWEREFNTWTEMNTIVYHGSLASRQM
IQQYEMYCKDSRGRLIPGAYKFDALITTFEMILSDCPELREIEWRCVIIDEAHRLKNRNC
KLLDSLKHMDLEHKVLLTGTPLQNTVEELFSLLHFLEPSQFPSESEFLKDFGDLKTEEQV
QKLQAILKPMMLRRLKEDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLSKGAGH
TNMPNLLNTMMELRKCCNHPYLINGAEEKILTEFREACHIIPHDFHLQAMVRSAGKLVLI
DKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSKP
DSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLI
TRNSYEREMFDKASLKLGLDKAVLQSMSGRDGNITGIQQFSKKEIEDLLRKGAYAAIMEE
DDEGSKFCEEDIDQILLRRTTTITIESEGKGSTFAKASFVASENRTDISLDDPNFWQKWA
KKADLDMDLLNSKNNLVIDTPRVRKQTRHFSTLKDDDLVEFSDLESEDDERPRSRRHDRH
HAYGRTDCFRVEKHLLVYGWGRWRDILSHGRFKRRMTERDVETICRAILVYCLLHYRGDE
NIKGFIWDLISPAENGKTKELQNHSVFDVSPLPGLSIPVPRGRKGKKVKSQSTFDIHKAD
WIRKYNPDTLFQDESYKKHLKHQCNKVLLRVRMLYYLRQEVIGDQAEKVLGGAIASEIDI
WFPVVDQLEVPTTWWDSEADKSLLIGVFKHGYEKYNTMRADPALCFLEKAGRPDDKAIAA
EHRVLDNFSDIVEGVDFDKDCEDPEYKPLQGPPKDQDDEGDPLMMMDEEISVIDGDEAQV
TQQPGHLFWPPGSALTARLRRLVTAYQRSYKKEQMKIEAAERGDRRRRRCEAAFKLKEIA
RREKQQRWTRREQTDFYRVVSTFGVEYDPDNMQFHWDRFRTFARLDKKTDESLTKYFHGF
VAMCRQVCRLPPAAGDEPPDPNLFIEPITEERASRTLYRIELLRRLREQVLCHPLLEDRL
ALCQPPGPELPKWWEPARHDGELLRGAARHGVSQTDCNIMQDPDFSFLAARMNYMQNHQA
GAPATSLSRCSTPLLHQQYTSRTASPLPLRPDAPVEKSPEETAVQVPNLESLTLKLEHEV
VARSRPTPQDYEMRVAPSDPTPLVSRSVPPVKLEDEDDSDSELDLSKLSPSSSSSSSSSS
SSSSTDESEDEKEEKLTADRPCPKFYDEESLLSLTMSQDGLPNEDGEQMTPELLLLQERQ
RASEWPKDRVLINRIDLVCQAVLSGKWPSSRKTQEMITGGILGPGNHLIDSPSLTPGEYG
DSPVPTPRSSSAASMAEEEASAVTTAAAQFTKLRRGMDEKEFTVQIKDEEGLKLTFQKHK
LMANGVMGDGHPLFHKKKGNRKKLIELEVECMEEPNHLDVDLETRIPVINKVDGTLLVGE
DAPRRAELEMWLQGHPEFAVDPRFLAYMEERRKQKWQRCKKNNKAELNCLGVEPVQTANS
RNGKKGHYAETAFNRVLPGPIAPESSKKRARRTRPDLSKMMALMQGGSTGSLSLHNTFQH
SSSGLQSVSPLGHSSATSAPLPFMPFVMGGTASSPHVDSSTMLHHHHHHHHHPHPHHHHH
HHPGLRATGYPSSPVTTTSGTAFRLPPLQPEEEDEDEDEDDDDLSQGYDSSERDFSLIDD
PMMPANSDSSEDADD
NT seq
7788 nt
NT seq
+upstream
nt +downstream
nt
atgaagatggcggaccccatcatggatctgtttgatgacccaaatttatttgggctggac
tctctgactgatgatagctttaaccaggttactcaagaccctattgaggaagcccttgga
ctgccaagttctctggactccttggatcaaatgaaccaggatggtggaggtggtgatgtg
gggagttcatcagcaagtggcctggtccctccaccagaggaaacagcccccacagaactt
cccaaagaatctacagctccagctccagaatccttaaccttgcatgattataccactcag
cccaccagccaggaacagccagcccaacctgtcttacagacatctacgccaacatcagga
cttctgcaggtctccaagagcccggagatcctgagccaagggaatcctttcatgggtgtc
tctgccacagctgtttcctccagtaatcatgggggacaaccacctcagtcagcccctaag
attgttatccttaaggccccaccaagttcctcagtcactggtgcccatgtggcacaaatt
caggctcaaggtatcaccagcacagctcagcccctggtggctggcacagccaatggtgga
aaagtcacttttaccaaagtgctaactggcacaccccttcgaccaggtgtttccattgtc
tctggtaatacagtgttggccgccaaggtccctgggaaccaggctgctgttcagcgcatt
gtccagcccagccgaccagtaaagcagctggtcctccagccagttaagggttcagctcct
gctggaaaccctggggccgcagggcccccactgaagcctgcagttacactgacctctaca
cctactcagggtgaatcaaaacgcatcaccctggtcctccagcagccacagtctggaggt
ccccaaggacatcgacatgttgtgttagggagtctaccaggcaagatagtattacagggc
aaccagctggcagccctgactcaagccaagaatgcccagggacagcctgccaaagttgtg
actatccagctgcaggtgcaacagccacagcaaaaaatccagattgtaccacagcctcca
tcatcacagccccagccccagcaatcaccctcaacccagccattgactctctcttctgtg
cagcaggctcagataatgggaccaggacaaagcccaggacagagactctcagtaccactc
aagatggtattgcagccacaggctggctcttcccaaggagcttcttctggcctttctgta
gttaaagttttaagtgccagtgaaatggcagctctgtcatcgccagcaagctctgttcca
catacgggaggaaaaacaggaatggaggaaaaccgaagactggagcaccagaagaagcaa
gaaaaagcaaatcggattgtagcagaggccatagctagggcccgagcccggggtgagcag
aacatacctcgagtcctcaatgaggatgaactgcctagtgttcgaccagaggaggaaggt
gaaaagaaacgcaggaagaagaacagtggggaaaggctgaaggaagaaaagccaaagaag
agtaaaacctctggttcttctaaaactaagggcaagagtaagctaaacaccatcactcct
gtagtgggtaagaagagaaagcgtaatacttcatctgataattcagatgtggaagtcatg
cctgcacagtcaccccgggaggatgaagaaagcagcattcagaagagacgctcaaaccgc
caagtgaagcgaaaaaaatatacagaggacctggatataaagattacagatgatgaagag
gaagaagaggtagatgtaactggtccaataaaacctgagcctatccttcctgaaccagta
caagaaccagatggtgagactttgccttccatgcagttttttgtggagaatcccagtgaa
gaagatgcggctattgtggacaaagtgctttctatgcgggttgtgaagaaggagcttcct
tctggacagtataccgaagcagaagaattctttgtcaagtataagaactattcctatctg
cactgtgaatgggctactatctctcaactagagaaggataaaagaatccatcaaaaacta
aagcgcttcaaaaccaaaatggctcagatgagacacttcttccatgaggatgaagagccc
tttaatccagactatgtagaggtggataggatattggatgagtctcacagcatagacaag
gataatggtgagcctgtaatttactacctggtgaaatggtgctctctgccctatgaggat
agtacatgggagctgaaggaggatgttgatgagggaaaaattcgagaatttaaacgcatc
cagtccagacacccagaactcaaaagggtgaatcgtccacaggcaaatgcctggaagaag
ttggagctgtcacatgaatataaaaacaggaaccagttacgggaatatcaattggaaggg
gtcaattggcttctctttaattggtataacaggcagaactgcattctggctgatgagatg
ggattgggaaaaactattcagtccattgccttcttgcaggaggtatataatgtgggcatc
catggccccttcttggtcattgctccactatccacaattaccaactgggaacgagaattc
aatacatggacagagatgaacactattgtataccatggcagcctggctagccggcagatg
attcagcaatatgaaatgtactgcaaagattcaagggggcgcctcatcccaggtgcttac
aaatttgatgccttgattacgacttttgagatgattttgtcagactgtccagaacttcgt
gaaattgaatggcgttgtgtcatcattgatgaggcccatcggttaaagaatcgtaattgc
aagctgcttgatagtctcaagcacatggacctggagcacaaagtgttactcacgggaaca
ccattgcaaaatactgtggaggaattgtttagcttgcttcatttcttggaaccttcacag
tttccttcagaatcagaattcctcaaggattttggggatcttaagacagaagaacaggtt
caaaaactacaggccattctcaagccaatgatgctgagaagacttaaagaggatgttgaa
aaaaacttggctcctaaacaggaaactattattgaagtagagctaactaacatccagaag
aaatactatcgggctattttggaaaagaatttctccttcctttccaaaggagcgggtcat
actaacatgcctaatctactcaacacaatgatggagctgcgcaagtgctgtaaccacccg
tatctcatcaatggtgcagaagaaaaaatcctaacagagtttcgggaagcttgccacatt
atacctcatgactttcacctgcaggccatggttcgctctgctggcaaattggttcttatt
gacaagttacttccaaagcttaaagctggtggccataaagttctaatcttttcccagatg
gtacgctgtctagatatcctagaagactatctaatccagaggaggtacttgtatgaacgc
atagatggtcgcgttagaggaaaccttcgacaggctgctatcgatcgctttagtaagcct
gactctgaccgctttgtcttcttgctgtgtactcgagctggtggacttggaattaatctt
acagctgctgatacctgcatcatctttgattcagattggaatccacaaaatgacttgcag
gcccaggcacggtgtcatcgaattggacagagcaaagctgtgaaggtgtaccgactcatc
actcgtaattcctatgagagagaaatgtttgataaggctagcctcaagttgggattggat
aaggctgtgcttcagtccatgagtggtcgggatggcaacatcactggtatccagcagttc
tccaaaaaagagattgaagatctcttaagaaaaggggcttatgcagccataatggaggaa
gatgatgagggctccaagttttgtgaagaggacatagaccagatcttgttaagacgaact
acaactatcactattgaatctgaaggaaaaggctctacctttgccaaggcaagctttgtt
gcttctgaaaatagaacagatatttctctggatgatcccaatttttggcaaaaatgggcc
aaaaaggctgatctagacatggacctgcttaatagcaagaataatttggtgattgacaca
cctagagtacggaaacagacccgccacttcagcactctgaaagatgatgacttggttgaa
ttctctgatttagaaagtgaggatgatgagaggccacggtcccgaagacatgatcgtcat
catgcttatggacgcacagactgctttcgggtggaaaagcatctcctagtatatggttgg
ggacgatggcgagatattttgtcccatggacgttttaagcggcggatgactgaacgagat
gtggagacaatatgtcgtgccatccttgtatattgcttgctacactaccgtggagatgaa
aatatcaaaggcttcatttgggatttgattagccctgctgaaaatggcaagacaaaagaa
ttgcagaatcattcggtctttgatgtctcccctcttccaggtctgtcaatccctgtgccc
cgtggacgcaagggcaaaaaagttaagtcacaaagtacttttgacatccataaggcagat
tggatccggaaatataatcctgatactcttttccaagatgagagttataagaagcatttg
aaacatcaatgtaacaaggtactgttgagagtacgaatgctgtattacctaaggcaagag
gttattggagaccaggcagagaaggtattaggtggtgccattgccagtgagattgacata
tggttcccagtcgtggatcagctggaagttccaacaacttggtgggacagtgaggctgat
aagtctcttctcattggagtctttaagcatggctatgaaaaatataatactatgagggca
gatccagccttgtgcttcctggaaaaggctggccggccagatgacaaagccattgccgca
gaacatcgagtgttagataatttctctgacatagtagaaggggttgactttgataaggac
tgtgaagatcctgaatataaaccactccaagggcccccaaaagatcaagatgatgagggt
gatcctttgatgatgatggatgaggagatctcagtgattgatggagatgaagcccaggtg
actcaacaaccagggcatctattctggcctccaggctctgccttaacagctcggcttcgc
cgcctagtaacagcctatcagcgcagctacaagaaagaacaaatgaagatagaggctgca
gaacgtggggaccgacggcgacggcgttgtgaagcagccttcaagttaaaagaaattgca
cggcgggaaaaacaacaacgatggactaggcgtgaacaaactgacttctatcgagtagtg
tctacctttggtgtggaatatgaccctgacaacatgcagttccattgggatcggttccgt
acttttgctcgactagataaaaagacagatgaaagcctaaccaagtatttccatggattt
gtagccatgtgccgacaagtgtgccgccttcctccagcagctggagatgaacccccagac
cctaacctgttcattgagcccatcactgaggaaagggcctcaaggactctctaccgcatt
gaattgcttcggcgcttacgggaacaagttttatgccacccacttttggaagataggctg
gcattgtgtcagcctccaggtccagaattgcctaaatggtgggagcctgctcgtcatgat
ggggagcttctacgaggggcagctcgccatggagtgagccaaacagactgtaacatcatg
caggacccagacttctcttttctggctgctcgtatgaattatatgcagaaccatcaggca
ggagcaccagctacatccttatcccgctgctccactccactgctacaccagcagtatacc
tcgcgcactgcctcaccattgcccctgcgcccagatgctcctgttgaaaagtcacctgag
gagacagctgtccaagtccccaatttggagagtctgactttaaagctagagcatgaggtg
gtggccaggagccgaccaacccctcaagactatgaaatgcgtgtagccccctctgatcct
acccctctggtgtcccggagtgttccaccagtcaaactggaagatgaggatgattcagac
tctgagctggacttgagcaagctgtcaccatcatcctcttcttcctcatcctcatccagc
tccagctccagcactgatgagagtgaggacgagaaagaagagaagttaactgctgaccga
ccctgcccaaagttctatgatgaagagagtctcttgtccctcactatgtctcaagatgga
ctcccaaatgaagatggggaacaaatgactcctgaactgctgctactgcaggagagacaa
agagcctctgaatggcccaaggatcgtgtcctgataaaccgaattgacctcgtctgtcag
gctgtactctcagggaaatggccttctagccgaaagacccaggaaatgataacaggagga
attttggggcctggcaaccatttaatagacagcccctctttgaccccaggagaatatggt
gactctccagttcctacaccacgaagcagcagtgcagcttccatggcagaggaggaggct
tctgcagtcaccacagcagcagcccagtttaccaaactgcgcagaggcatggatgagaag
gagtttacagttcagatcaaagatgaggaaggattaaagttaacattccagaagcacaaa
ctgatggctaatggcgtaatgggagatggccatccactgtttcataagaagaaggggaac
agaaagaagctaatagagctggaggtggagtgcatggaagagcctaatcaccttgatgtg
gacctggagacccggatccccgtcatcaataaggtggatggtactttgctggtgggtgag
gatgcccctcgccgggctgaactggagatgtggttacagggtcatccagagtttgctgtc
gatccccgatttctagcgtatatggaggagcgcagaaaacagaagtggcagagatgtaaa
aagaacaataaggcagaattgaactgtttgggagtggaaccagtacagacagctaactct
aggaatgggaagaagggtcactatgctgaaactgctttcaaccgagttttgccagggcct
attgcaccagagagcagcaagaagcgggctcgtaggacacgaccagacctttctaagatg
atggccctgatgcagggtggaagcactgggtccctatctctgcataataccttccagcac
agcagcagtggcttacagtctgtgtctcctctgggtcacagcagtgccacttctgcacct
ttgccttttatgccgtttgtgatgggcggtacagcatcatccccccatgtagactccagc
accatgcttcatcaccaccaccaccaccaccaccacccccacccccaccatcaccaccat
caccatccaggtttgagagccactggctacccatcttcaccagtgactaccacctctggt
actgcctttcggttaccaccactacaacctgaggaagaggatgaggatgaggatgaagat
gatgatgatttatctcagggctatgatagctcagaaagagacttctcactcattgatgat
cctatgatgccagccaactcagactccagtgaagatgctgatgactga
DBGET
integrated database retrieval system
