KEGG   Dipodomys spectabilis (banner-tailed kangaroo rat): 122108180
Entry
122108180         CDS       T07891                                 
Symbol
Sec13
Name
(RefSeq) protein SEC13 homolog
  KO
K14004  protein transport protein SEC13
Organism
dsp  Dipodomys spectabilis (banner-tailed kangaroo rat)
Pathway
dsp03013  Nucleocytoplasmic transport
dsp04141  Protein processing in endoplasmic reticulum
dsp04150  mTOR signaling pathway
dsp05014  Amyotrophic lateral sclerosis
Brite
KEGG Orthology (KO) [BR:dsp00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    122108180 (Sec13)
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    122108180 (Sec13)
 09130 Environmental Information Processing
  09132 Signal transduction
   04150 mTOR signaling pathway
    122108180 (Sec13)
 09160 Human Diseases
  09164 Neurodegenerative disease
   05014 Amyotrophic lateral sclerosis
    122108180 (Sec13)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dsp03019]
    122108180 (Sec13)
   04131 Membrane trafficking [BR:dsp04131]
    122108180 (Sec13)
Messenger RNA biogenesis [BR:dsp03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     122108180 (Sec13)
Membrane trafficking [BR:dsp04131]
 Protein recycling
  Rab GTPases and associated proteins
   Rab11 associated proteins
    122108180 (Sec13)
 Endoplasmic reticulum (ER) - Golgi transport
  Forward pathways
   Coat protein complex II (COP-II)
    122108180 (Sec13)
 Autophagy
  Other autophagy associated proteins
   SEACAT/GATOR2 complex
    122108180 (Sec13)
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_IFT122_1st Beta-prop_WDR5 WD40 Beta-prop_WDR3_1st WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 Beta-prop_WDR3_2nd Beta-prop_EIPR1 WD40_MABP1-WDR62_2nd WDR55 WD40_Gbeta Beta-prop_RIG_2nd EIF3I ANAPC4_WD40 Beta-prop_NOL10_N Beta-prop_WDR41 Beta-prop_WDR90_POC16_2nd Beta-prop_WDR35_TULP_N Beta-prop_WDR75_1st Beta-prop_Vps41 Beta-prop_WDR36-Utp21_1st Beta-prop_EML NBCH_WD40 PAC11
Other DBs
NCBI-GeneID: 122108180
NCBI-ProteinID: XP_042536098
LinkDB
Position
Unknown
AA seq 322 aa
MVSVINTVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPV
WQVAWAHPMYGSVLASCSYDRRVIVWKEENGTWEKTHEHAGHDSSVNSVCWAPHDYGLIL
ACGSSDGAISLLTYAGEGQWEVKKISNAHTIGCNAVSWAPAVVPGSLIDQPSGQKPSYIK
RFASGGCDNLIKLWREEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRV
FIWTCDDASGNMWSPKLLHKFSDVVWHVSWSITANILAVSGGDNKVTLWKESVDGQWVCI
SDVNKGQGSVSASVTEGQQNEQ
NT seq 969 nt   +upstreamnt  +downstreamnt
atggtgtcggtaattaacactgtggacacatcccatgaggacatgatccacgatgcccag
atggactactatggcacccgcctggccacctgctcctctgacaggtccgtcaagatcttt
gatgtgcgcaacggagggcagattctcatcgccgacctccgagggcacgagggcccagtg
tggcaggtggcctgggctcaccccatgtacggcagcgtcctggcgtcctgctcctacgac
cgcagggtcatcgtctggaaagaggagaatggcacgtgggagaagacccacgagcacgcc
ggacacgactcgtcagtgaactctgtgtgctgggccccccatgactatggcctgatcctg
gcctgcggaagctcggacggggccatctccctgctgacctacgccggggaaggccagtgg
gaagtgaagaagatcagcaatgcccataccatcggctgcaatgccgtcagctgggcccct
gctgtcgtccctgggagcctcatagaccagccgtcgggccagaagcccagttacatcaag
aggtttgcctcgggcggctgtgacaacctcatcaagctgtggagggaagaagaggacggc
cagtggaaggaggagcagaagctggaggcccacagtgactgggttcgagacgtggcctgg
gctccctccatcggcctgcccaccagcaccatcgccagctgctcccaggacggccgggtg
ttcatctggacctgcgatgacgcctcgggcaacatgtggtcgcccaagctgctgcacaag
ttcagcgacgtggtgtggcacgtgagctggtccatcactgccaacatcctggccgtctcg
ggcggcgacaacaaggtgacattgtggaaagagtcagtggacggacagtgggtgtgcatc
agtgatgtcaacaagggccaggggtccgtgtcagcttcggtcacagagggccagcagaat
gagcagtga

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