Dipodomys spectabilis (banner-tailed kangaroo rat): 122108222
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Entry
122108222 CDS
T07891
Symbol
Pdzrn3
Name
(RefSeq) E3 ubiquitin-protein ligase PDZRN3 isoform X1
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
dsp
Dipodomys spectabilis (banner-tailed kangaroo rat)
Brite
KEGG Orthology (KO) [BR:
dsp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
dsp04121
]
122108222 (Pdzrn3)
Enzymes [BR:
dsp01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
122108222 (Pdzrn3)
Ubiquitin system [BR:
dsp04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
122108222 (Pdzrn3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
zf-C3HC4_2
zf-RING_2
zf-C3HC4
zf-RING_UBOX
Sina_ZnF
zf-C3HC4_3
zf-TRAF
zf-C3HC4_4
zf-RING_5
TRAF3_RING
Prok-RING_4
PDZ_Tricorn
zf-rbx1
CEP104_ZnF
Motif
Other DBs
NCBI-GeneID:
122108222
NCBI-ProteinID:
XP_042536144
LinkDB
All DBs
Position
Unknown
AA seq
1068 aa
AA seq
DB search
MGFELDRFDGDVDPDLKCALCHKVLEDPLTTPCGHVFCAGCVLPWVVQEGSCPARCRGRL
SAKELNHVLPLKRLILKLDIKCAHAARGCGRVVKLQELPEHLERCDFAPARCRHAGCGQV
LLRRDVEAHMRDACDARPVGRCQEGCGLPLTHGEQRAGGHCCARALRAHNGALQARLGAL
HKALKKEALRAGKREKALVAQLAAAQLELQMTALRYQKKFTEYSARLDSLSRCVAAPSGG
KGEETKSLTLILHRDSGSLGFNIIGGRPCVDNQDGSSSEGIFVSKIVDSGPAAKEGGLQI
HDRIIEVNGKDLSRATHDQAVEAFKTAKEPIVVQVLRRTPRTKMFTPPAESQLVDTGTQT
DITFEHIMALTKMSSPSPPVLDPYLLPEEHSSAHEYYDPNDYMGDMHQEMDREELELEEV
DLYRMNSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQN
REEAVALLTSEENKNFSLLIARPELQLDEGWMDDDRNDFLDELHMDMLEEQHHQAMQFTS
SVFQQKKHEEDGGTTDTATIMSNQHEKDSGVGRTDESTRNDESSEQENNGDDATASSSNP
LAGQRKLTCSQDTLGSGDLPFSNESFISADCTDVDYLGIPVDECERFRELLELKCQVKSA
SPYGLYYPGSPLEAGKSDPDSVDKELELLNEELRSIELECLSIVRAHKMQQLKEPCAREP
WMLHHSAFRNYNTSIDLRRHELSDITELPEKSDKDSSSAYNTGESCRSTPLTLETSPDNS
LRRAAQGAPTEAYGPSPKNLLAITEDPETVTPSYNNPAAKELDPGLSPESKDHRTGGGDG
RSPSASPPKLGGGAYLSPYPHSPYKHAHIPAHAQHYQSYMQLIQQKSAVEYAQSQMSLVS
MCKDLNSSHSSTEPRMEWKVKVRSDGTRYITKRPVRDRLLRERALRIREERSGMTTDDDA
VSEMKMGRYWSKEERKQHLVKAKEQRRRREFMMQSRLDCLKEQQQQQQQGADDRKEVNIL
ELSHKKMMKKRNKKIFDNWMTIQELLTHGTKSPDGTRVYNSFLSVTTV
NT seq
3207 nt
NT seq
+upstream
nt +downstream
nt
atgggcttcgagctggaccgcttcgatggcgacgtggacccggacctgaagtgcgcgctg
tgccacaaggtcctggaggacccgctgaccaccccgtgcggccacgtcttctgtgccggc
tgcgtgctgccctgggtggtgcaagagggcagctgcccggcgcgctgccgcggtcgcctg
tcggccaaggagctcaaccacgtcctgcccctcaagcgcctgatcctcaagctggatatc
aagtgcgcgcacgcggcgcgcggctgcggccgggtggtcaagctgcaggagctgcccgag
cacctggagcgctgcgacttcgcgcccgcgcgctgccgccacgcgggctgcggccaggtg
ctgctgcggcgcgacgtggaggcgcacatgcgcgacgcgtgcgacgcgcggcccgtgggc
cgctgccaggagggctgcgggctgccgctgacgcacggcgagcagcgcgcgggcggccac
tgctgcgcgcgggcgctgcgggcgcacaacggcgcgctgcaggcccgcctgggcgcgctg
cacaaggcgctcaagaaggaggcgctgagggccggcaagcgcgagaaggcgctggtggcg
cagctggccgccgcgcagctcgaactgcagatgaccgcgctgcgctaccagaagaagttc
accgagtacagcgcgcgcctcgactcgctcagccgctgcgtggccgcgccgtcggggggc
aagggtgaagaaaccaaaagtctaacactcatcctacatcgggattctggctccctggga
ttcaatattattggtggccggccttgtgtggacaatcaagatggatcatccagtgaagga
atctttgtatccaaaatagttgacagtgggccggcagccaaggaaggaggcctgcaaatt
catgacaggattattgaggtaaacggcaaagatttatccagagcaactcatgaccaggct
gtggaagctttcaagacagccaaagagcccattgtggtccaggtactgaggaggacacct
cggaccaaaatgttcacgccacctgcagagtcgcagctggtggatacaggcacccaaact
gacatcacctttgaacacatcatggcactgaccaagatgtcttcacccagcccacctgtg
ctggacccctacttgctgccagaggagcactcctcagcccatgaatactatgatccaaat
gattacatgggagacatgcatcaggagatggacagagaggagctggagctggaggaagta
gacctctacagaatgaacagccaggacaagctgggtctcaccgtatgctaccggacagat
gatgaagatgacattggcatttatataagtgagattgaccctaacagcatcgcagccaag
gatgggcgcattcgagaaggagaccgcattatccagattaatggaatagaggtacagaac
cgtgaagaagctgtggctcttctgaccagtgaagaaaataagaacttttcattgctgatt
gcaaggcctgaactccagctggacgagggatggatggatgacgacaggaatgactttctg
gatgagctgcacatggacatgcttgaggaacagcaccaccaggcaatgcagttcacatcc
agcgtgttccagcagaagaagcacgaggaagacggagggaccacagacaccgccaccatc
atgtccaaccagcacgagaaggacagcggcgtagggcggacggatgagagcacgcgcaac
gacgagagctccgagcaggagaacaacggcgacgacgccacggcctcctcctccaacccg
ctggcgggccagaggaagctcacctgtagccaggacaccctgggcagtggcgacctgcct
ttcagcaacgagtccttcatctcggccgactgcaccgacgtggattacctgggcatcccg
gtggacgagtgcgagcgcttccgcgagctgctggagctcaagtgccaggtgaagagcgcc
agcccctacggcctgtactaccccggcagccccctggaggccggcaagagcgaccccgac
agcgtggacaaggagctggagctcctcaacgaggagctgcgcagcatcgagctggagtgc
ctgagcatcgtgcgcgcgcacaagatgcagcagctgaaggagccgtgcgcgcgcgagccc
tggatgctgcaccacagcgccttccgcaactacaacaccagcatcgacctgcgccgccat
gagctctccgacatcaccgagctgcccgagaagtcggacaaggatagttcgagcgcctac
aacaccggggagagttgccgcagcacgccgctcaccctggagacctccccggacaactct
ctccggagagcggcccagggcgcccccacggaggcctacgggccgtcccccaaaaatctg
ctcgccatcaccgaagaccccgagaccgtcaccccgagttacaacaacccggccgccaaa
gagctggaccccggcctgtctccggagagcaaggatcaccgcaccgggggcggggacggc
cggagccccagcgccagccctccgaagctgggcggcggcgcctacctgtccccgtacccc
cactccccgtacaaacacgcgcacatccccgcgcacgcgcagcactaccagagctacatg
cagctcatccagcagaagtcggccgtggagtacgcgcagagccagatgagcctggtgagc
atgtgcaaggacctgaactcctcccactcgtccaccgagccccggatggagtggaaggtg
aaggtccgcagcgacggcacgcgctacatcaccaagaggcccgtgcgcgaccggctgctg
cgcgagcgcgcgctgcgcatccgcgaggagcgcagcggcatgaccaccgacgacgacgcg
gtgagcgagatgaagatggggcgctactggagcaaggaggagcgcaagcagcacctggtg
aaggccaaggagcagcggcggaggcgcgagttcatgatgcagagccggctggattgtctg
aaggagcagcagcagcagcagcagcaaggggcggatgaccggaaggaggtcaatatcctc
gaactgagccacaagaaaatgatgaagaagaggaataagaagatcttcgacaactggatg
accatccaggaactcctcacgcacggcaccaagtccccggacggcacccgggtgtacaat
tctttcctgtccgtgacgactgtatga
DBGET
integrated database retrieval system
