Dipodomys spectabilis (banner-tailed kangaroo rat): 122108553
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Entry
122108553 CDS
T07891
Symbol
Mid1
Name
(RefSeq) E3 ubiquitin-protein ligase Midline-1 isoform X1
KO
K08285
midline 1 [EC:
2.3.2.27
]
Organism
dsp
Dipodomys spectabilis (banner-tailed kangaroo rat)
Pathway
dsp04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
dsp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
122108553 (Mid1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
dsp04121
]
122108553 (Mid1)
Enzymes [BR:
dsp01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
122108553 (Mid1)
Ubiquitin system [BR:
dsp04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
122108553 (Mid1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
COS
SPRY
ANCHR-like_BBOX
zf-B_box
fn3
zf-RING_UBOX
RING_XB3-XBAT31
PRY
zf-C3HC4_4
zf-C3HC4
zf-C3HC4_2
Ig_DSCAM-DSCAML_C
zf-C3HC4_3
zf-RING_2
Pur_ac_phosph_N
zf-RING_5
NDNF
Baculo_PEP_C
Motif
Other DBs
NCBI-GeneID:
122108553
NCBI-ProteinID:
XP_042536459
LinkDB
All DBs
Position
Unknown
AA seq
667 aa
AA seq
DB search
METLESELTCPICLELFEDPLLLPCAHSLCFNCAHRILVSHCATNEPVESISAFQCPTCR
HVITLSQRGLDGLKRNVTLQNIIDRFQKASVSGPNSPSETRRERPFDANTMSSAEKVLCQ
FCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLIEPIPDSHIRGLMCLEHED
EKVNMYCVADDQLICALCKLVGRHRDHQVAALSERYDKLKQNLESNLTNLIKRNTELETL
LAKLIQTCQHVEVNAARQEAKLTEECDLLIEIIQQRRQIIGTKIKEGKVMRLRKLAQQIA
NCKQCIERSASLISQAEHSLKENDHARFLQTAKNITERVSMATASSQVLIPEINLNDTFD
TFALDFSREKKLLECLDYLTAPNPPTIREELCTASYDTITVHWTSDDEFSVVSYELQYTI
FTGQANVISLCNSADSWMIVPNIKQNHYTVHGLQSGTKYIFMVKAINQAGSRSSEPGKLK
TNSQPFKLDPKSAHRKLKVSHDNLTVERDESSSKKSHTPERFTSQGSYGVAGNVFIDSGR
HYWEVVISGSTWYAIGLAYKSAPKHEWIGKNSASWALCRCNNNWVVRHNSKETPIEPAPH
LRRVGLLLDYDSGSIAFYDALNSIHLYTFDVAFAQPVCPTFTVWNKCLTIITGLPIPDHL
DCTEQLP
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atggaaacgctcgagtcggagctgacctgccctatttgtctggagctctttgaggaccct
ctcctgctgccctgtgcacacagcctctgcttcaactgtgcccaccgcatcttggtgtcg
cactgtgccaccaacgagcctgtggagtccatcagcgctttccagtgccccacctgccgg
catgtcatcacgctcagccagcgaggtctagacgggctcaagcgcaacgtcaccctgcag
aacatcattgacaggttccagaaagcctcggtgagcgggcctaattcccctagcgagacc
cgccgcgagcggcccttcgacgccaacaccatgtcctctgccgagaaggtgctctgccag
ttctgtgaccaggatcctgcccaggacgctgtgaaaacctgtgtcacttgcgaagtgtcc
tactgcgatgagtgcctgaaagccactcacccgaacaagaagcccttcacaggccatcgt
ctgattgagccaatcccggactcgcacatccggggcctgatgtgcctagagcacgaggat
gagaaggtgaatatgtactgtgtggccgatgaccagttaatctgtgccttgtgtaaactg
gttgggcggcaccgcgatcatcaggtggcagctttgagtgagcgctatgacaaattgaag
caaaacttagagagcaacctcaccaaccttatcaagaggaacacagagctggagaccctt
ttggctaaactcattcaaacctgtcagcatgtggaagttaatgcagcacgtcaagaagcc
aaattgactgaagagtgcgatcttctcattgagatcattcagcaaagacggcaaattatt
ggaaccaagatcaaagaagggaaggtgatgaggcttcgcaaactggctcagcagattgca
aactgcaagcagtgcattgagcgctcagcatcgctcatctcccaagcagaacactctctg
aaggagaacgaccatgcccgcttcctgcagactgccaagaatatcactgagagggtctcc
atggcaactgcgtcctctcaggtcctcattcctgaaatcaacctcaatgacacatttgac
acctttgccttagatttttcccgagagaagaaattgctagaatgtctggattaccttaca
gctcccaaccctcccacaattagagaagagctctgcacagcttcatatgataccatcact
gtccactggacatccgatgatgagttcagtgtggtctcctatgagctccagtacaccata
ttcaccggacaagccaatgtcattagtctgtgtaactcggctgatagctggatgattgtg
cccaatatcaagcagaaccactacacagtacatggtctgcagagtggcaccaagtacatc
ttcatggtcaaggccatcaaccaggcaggcagccgcagcagcgagcctggcaagttgaag
acaaacagccaaccatttaaactggatcctaaatctgctcatcggaaactgaaggtgtcc
cacgataacctcacagtagaacgtgatgagtcatcatctaaaaagagccacacgcctgaa
cgcttcaccagccaggggagctatggagtagctggaaatgtgttcattgatagtggccgg
cattactgggaagtggtcataagtggaagtacatggtatgccattggccttgcttacaaa
tcagccccaaagcatgaatggattgggaaaaactctgcttcctgggccctctgccgctgc
aacaataactgggtggtcagacacaacagcaaggagacccccattgagccagcccctcat
ctccggcgcgttggccttctgctggactatgacagcggctccatcgccttttatgatgct
ttgaactccatccacctctacaccttcgatgtggcatttgcgcagcctgtgtgtcccacc
ttcactgtgtggaacaagtgtctgacgatcataactggtcttcctatcccagaccacttg
gattgtacagagcagctgccttga
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