Dipodomys spectabilis (banner-tailed kangaroo rat): 122108643
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Entry
122108643 CDS
T07891
Symbol
Nup88
Name
(RefSeq) nuclear pore complex protein Nup88 isoform X1
KO
K14318
nuclear pore complex protein Nup88
Organism
dsp
Dipodomys spectabilis (banner-tailed kangaroo rat)
Pathway
dsp03013
Nucleocytoplasmic transport
dsp05014
Amyotrophic lateral sclerosis
Brite
KEGG Orthology (KO) [BR:
dsp00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
122108643 (Nup88)
09160 Human Diseases
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
122108643 (Nup88)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dsp03019
]
122108643 (Nup88)
Messenger RNA biogenesis [BR:
dsp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
122108643 (Nup88)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Nup88
DUF659
DUF7344
FliJ
Motif
Other DBs
NCBI-GeneID:
122108643
NCBI-ProteinID:
XP_042536577
LinkDB
All DBs
Position
Unknown
AA seq
742 aa
AA seq
DB search
MASAEASVCDGELWQTWLPNHAVFSRLREGLKNQSPVEAEKSTSAVPVSPQLPPQLLTRN
LTFGLGGELFLWDAESSAFLVVRLRGLGGGGEEPHLSQYQRLLCINPPLFEIYQVLLSPT
HHHVALIGIKGLMVLEFPKRWGKNSEFEGGKATVNCSTTPVAERFFTSSPSLTLKHAAWY
PSEMLDPHIVLLTSDNVIRIYSLREPQIPTKVIVLSEAEEESLILNKGRTYTASLGETAV
AFDFGPLAAVPKHIFGQKGKDEVVAYPLYILYENGETFLTHVSLLHSPGNIGKLLGPLPM
HPAAEDNYGYDACAILCLPCVPNILVIATESGMLYHCVVLEGEEEDDQTSEKSWDYRADL
IPSLYVFECVELELALKLASGEDEPYESDFSCPIKLHRDPKCPSRYHCTHEAGVHSVGLT
WIHKLHKFLGSDEEDKDSLQELATEQKCFVEHILCTKPLPCRQPAPIRGFWIVPDILGPT
MICITSSYECLIRPLLSTVHPASPPLLCTQEDAEVAESPLRILAETPDSFEKHIRSILQR
SAANPAFLKSSEKDLAPPLEECLQLISRATQVFREQYILKQDLAKEEIQRRVKLLCDQKK
KQLEDLNYCREERKSLREMAERLADKYEEAKEKQEDIMNRMKKVLHSFHSQLPVLSDSER
DMKKELQLIPDQLRHLGNAIKQVTMKKDYQQRKMEKVLSPQKPTITLSAYQRKCIQSILK
EEGEHIREMVKQINDIRNHVNF
NT seq
2229 nt
NT seq
+upstream
nt +downstream
nt
atggcgtctgctgaggcgtctgtgtgcgatggtgagctgtggcagacctggcttcccaac
cacgcggttttctctcggctccgggagggattaaaaaatcagagtccagtggaagccgag
aaatccacttcggcggtgccggtatcgccgcagctcccgccccagctgctgacgagaaac
ctgacgttcggcctgggcggagagctcttcctgtgggacgcggagagcagcgccttcctg
gtggtccgccttcggggactcggcggcggcggcgaggagcctcacctctcccagtaccag
agattgctttgcataaatcctcccctgtttgaaatttatcaagtcttattaagtccaaca
caccatcacgtagcacttataggaataaaaggacttatggtattagaatttcccaaaaga
tgggggaagaattctgaatttgaaggtggaaaagcaacagtaaactgtagtactactcca
gttgctgagagattcttcaccagttccccctctctgactcttaagcatgctgcctggtat
ccaagtgaaatgttagatcctcacatagtacttttaacatcagataatgtaataagaatt
tactctctacgtgagccccagattcccactaaagtgattgtactctcagaagcagaagaa
gaaagtttaatactcaacaaagggaggacatacactgcgtctctcggagaaacagcagtt
gcatttgactttggaccattggcagctgtcccaaagcatatatttggacagaaaggcaaa
gacgaagtagtagcatatcctctgtacatcttatacgagaacggggagacgttcctcaca
catgttagtctgttacacagccctggaaatattggaaagttattgggtccattgccaatg
catcctgcagctgaagataactacggttatgatgcttgtgctatactctgcttaccttgt
gtccccaacatattagtgattgcaactgaatcaggaatgctgtatcactgtgtggtgcta
gagggggaggaagaagacgaccaaacatcagaaaagtcctgggattacagagccgacctc
attccatctctgtatgtcttcgaatgtgttgagctggagcttgccttgaagctggcatct
ggggaggatgagccctatgagtctgacttttcttgtccaataaaacttcacagagacccc
aagtgtccttcacgataccactgcactcatgaggctggcgtccacagtgtggggctaact
tggattcacaaacttcacaagttccttggatcagatgaagaagataaggatagtttgcaa
gaacttgctacagaacagaaatgctttgtagagcacatcctttgtacaaagccattgcca
tgcaggcaaccagctcccatccgaggattctggattgtcccagacatactggggcccacg
atgatctgtatcaccagcagctacgaatgcctcatccgtcctctcttaagtacagtccac
ccagcctctccgcctctgctttgtacccaagaagatgctgaagtggccgagtctcccctc
cgtattctggctgaaacaccagattcctttgaaaagcatattagaagcattttacagcgt
agtgctgccaacccagcatttctgaaatcttctgaaaaggacttggctcctcctcttgaa
gaatgtcttcagctcatcagcagagccacccaggtgttcagagaacagtacattcttaag
caagacctggcaaaggaggagattcagcggagagtcaagttattatgtgaccaaaaaaag
aagcaactagaagatctcaattattgtcgagaagagaggaaaagtcttcgggaaatggct
gagcgtttagctgacaaatatgaggaagccaaggaaaaacaggaagatattatgaacagg
atgaaaaaggtacttcatagtttccactctcaactcccagttctttctgatagtgagaga
gacatgaagaaagaattacagcttatacctgatcaacttcgacatctaggcaatgccatt
aaacaggttactatgaaaaaagactatcaacaacgaaagatggaaaaggtcttgagtccc
caaaaacccacaattactctcagtgcctaccagcggaagtgcattcaatccattctgaag
gaggagggtgaacacataagggaaatggtgaagcaaatcaatgatattcgaaatcatgta
aacttctga
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