Dipodomys spectabilis (banner-tailed kangaroo rat): 122108789
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Entry
122108789 CDS
T07891
Symbol
Ddx1
Name
(RefSeq) ATP-dependent RNA helicase DDX1
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
dsp
Dipodomys spectabilis (banner-tailed kangaroo rat)
Brite
KEGG Orthology (KO) [BR:
dsp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dsp03041
]
122108789 (Ddx1)
03016 Transfer RNA biogenesis [BR:
dsp03016
]
122108789 (Ddx1)
Enzymes [BR:
dsp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122108789 (Ddx1)
Spliceosome [BR:
dsp03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
122108789 (Ddx1)
Transfer RNA biogenesis [BR:
dsp03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
122108789 (Ddx1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
SPRY
ResIII
CMS1
DUF5766
Paramyxo_PNT
Motif
Other DBs
NCBI-GeneID:
122108789
NCBI-ProteinID:
XP_042536704
LinkDB
All DBs
Position
Unknown
AA seq
740 aa
AA seq
DB search
MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV
IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWH
GCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFD
NYGEEFTMHDTIGCYLDIDKGQVKFSKNGKDLGLAFEVPAHMKNQALFPACVLKNAELKF
NFGEEEFKFPPKDGFVALSKAPDSYVVKSQHTGNAQVTQTKFLPNAPKALIVEPSRELAE
QTLNNVKQFKKYIDNPKLRELLIIGGVAARDQLSVLDNGVDIVVGTPGRLDDLVSTGKLN
LSQVRFLVLDEADGLLSQGYSDFINRMHSQIPQITSDGKRLQVIVCSATLHSFDVKKLSE
KIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKNDRLWERLGKNHIRTDDVHAKDNTRPGAN
SPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFMQQGGGPDKKGHQF
SCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYV
HRIGRVGRAERMGLAISLVATEKEKVWYHVCSNRGKGCYNTRLKEDGGCTIWYNEMQLLS
EIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGNYKGHVDILAPTVQELAALEK
EAQTSFLHLGYLPNQLFRTF
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atggcggccttctccgagatgggtgttatgcctgagattgctcaagcagtggaagaaatg
gactggcttcttccaactgatatccaggccgaatctatcccattaatcctaggaggaggt
gatgtgttgatggctgcagaaacaggaagtggaaaaactggtgctttcagtattccagtt
atccagatagtttatgaaactctgaaagaccaacaggaaggtaaaaaaggaaaaacaaca
attaaaactggagcttcagtgctcaacaaatggcagatgaacccatatgatagagggtct
gcttttgcaattgggtcggatggtctttgttgtcaaagcagagaagtaaaggaatggcat
gggtgcagagctaccaaaggattaatgaaagggaaacactactatgaagtgtcctgtcac
gaccaaggtttgtgcagagttgggtggtctaccatgcaggcctctttagacctaggtact
gacaaatttggatttggatttggtggtacaggaaagaaatcccataataaacagttcgat
aattacggagaggaattcactatgcatgataccattggatgttatctagatatagataaa
ggacaagtcaagttttccaaaaatggaaaagatcttggtctggcatttgaagtaccagca
cacatgaaaaatcaagctctctttcctgcctgtgttttgaagaatgctgaactaaaattt
aacttcggggaagaagaatttaagtttccacctaaagatggctttgttgctctttccaag
gcaccagatagttatgttgtcaagtcacagcacacaggtaatgcacaagtgacacaaacc
aagtttcttcccaatgctccaaaagctctcattgttgaaccctcccgggaattagctgaa
caaactttgaataatgttaaacagtttaagaagtatattgataatcctaagttaagggag
cttctgatcattggaggtgttgcagcacgggatcaactctctgttttagataatggggtg
gatattgttgtaggtactccaggaagactagatgatttggtgtcaactggaaaactgaac
ttatctcaagtcagattcctggtcctggatgaagctgatgggcttctttctcaaggttat
tctgattttataaataggatgcacagtcagattcctcagattacctctgatggaaaaaga
cttcaggtgattgtttgctctgctactttgcattcctttgatgtaaagaagctgtcggag
aagataatgcattttcccacatgggttgatttaaaaggagaagattctgttcccgatact
gtgcaccacgttgttgtccctgtgaatcccaaaaatgacaggctctgggaaaggctgggg
aaaaaccacattaggactgatgatgtacatgcaaaagacaacacaagacctggtgctaac
agtccagagatgtggtcggaagctattaaaatcctgaagggagagtatgctgtccgagca
atcaaggaacacaagatggatcaagcaattatcttctgcagaaccaaaatagactgtgat
aacttggagcagtactttatgcaacaaggaggaggacctgataaaaaaggacatcagttc
tcgtgtgtttgtcttcatggtgacagaaagcctcatgagagaaagcaaaacctggagaga
tttaagaagggagatgtaagattcttgatttgcacagatgtagctgccagaggaattgat
atccatggtgttccttacgtcataaatgtcaccctgcctgatgaaaagcaaaactatgta
caccgaatcggcagagtaggaagagctgaaaggatgggtttggctatttccctggtggca
acagaaaaagaaaaggtttggtatcatgtgtgtagcaatcgtggaaaaggatgttacaac
acaagactcaaggaagacgggggctgtactatatggtataatgagatgcagctgctgtct
gagatagaagaacatctcaactgtaccatttctcaagttgagcctgatataaaggttcca
gtggatgagtttgatgggaaagttacctatggtcaaaaaagggctgctggtggtggaaac
tataaaggccatgtggatattttggcacctactgttcaagagttggccgcccttgaaaag
gaggcacagacatctttcctgcatcttggctaccttcccaaccagctgttcagaaccttc
tga
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