Dipodomys spectabilis (banner-tailed kangaroo rat): 122109983
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Entry
122109983 CDS
T07891
Symbol
Thoc2
Name
(RefSeq) THO complex subunit 2 isoform X1
KO
K12879
THO complex subunit 2
Organism
dsp
Dipodomys spectabilis (banner-tailed kangaroo rat)
Pathway
dsp03013
Nucleocytoplasmic transport
dsp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dsp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122109983 (Thoc2)
09122 Translation
03013 Nucleocytoplasmic transport
122109983 (Thoc2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dsp03019
]
122109983 (Thoc2)
03041 Spliceosome [BR:
dsp03041
]
122109983 (Thoc2)
Messenger RNA biogenesis [BR:
dsp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
122109983 (Thoc2)
Spliceosome [BR:
dsp03041
]
Complex C
Other components
EJC/TREX
122109983 (Thoc2)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
122109983 (Thoc2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
Motif
Other DBs
NCBI-GeneID:
122109983
NCBI-ProteinID:
XP_042538400
LinkDB
All DBs
Position
Unknown
AA seq
1617 aa
AA seq
DB search
MADATVVLPAEWIKNWEKTGRCEFLHLCRLLSENKSHDSSTYRDFQQALYELSYHVIKGN
LKHEQASNVLTDISEFREDMPSILADVFCILDIETNCLEEKSKRDYFTQLVLACLYLVSD
TVLKERLDPDTLESLGLIKQSQQFNQKSVKIKTKLFYKQQKFNLLREENEGYAKLIAELG
QDLSGNVTSDLILENIKSLIGCFNLDPNRVLDVILEVFECRPEHDDFFISLLESYMSMCE
PQTLCHILGFKFKFYQEPSGETPSSLYRVAAVLLQFNLIDLDDLYVHLLPADSCIMDEHK
REIVEAKQIVRKLNMVVLSSEKMDEREKEKEKDDDKVEKPPDNQKLGLLEALLMIGDWQH
AQNIMDQLPPYYAASHKQIALAICKLIHITVEPLYRRVGVPKGAKGSPVDALQNKRAPKQ
AESYEDLRRDVFNMFCYLGPHLSHDPILFAKVVRIGKSFMKEFQSEGTKQEDKDKTEVIL
SCLLSITDQVLLPSLSLMDCNACMSEELWGMFKTFPYQHRYRLYGQWKNETYNGHPLLVK
VKAQTIDRAKYIMKRLTKENVKPSGRQIGKLSHSNPTILFDYILSQIQKYDNLITPVVDS
LKYLTSLNYDVLAYCIIEALANPEKERMKHDDTTISSWLQSLASFCGAVFRKYPIDLAGL
LQYVANQLKAGKSFDLLILKEVVQKMAGIEITEEMTMEQLEAMTGGEQLKAEGGYFGQIR
NTKKSSQRLKDALLDHDLALPLCLLMAQQRNGVIFQEGGEKHLKLVGKLYDQCHDTLVQF
GGFLASNLSTEDYIKRVPSIDVLCNEFHTPHDAAFFLSRPMYAHHISSSEPGRNAALRKE
GSWTVRSRDSYSKYDELKKSEKGNKQQHKVHKYISSCEMVMAPVHEAVVSIHVAKVWDDI
SPQFYATFWSLTMYDLAVPHSSYEREVNKLKVQMKAIDDNQEMPPNKKKKEKERCTALQD
KLLEEEKKQMEHVQRVLQRLKLEKDNWLLAKSTKNETITKFLQLCIFPRCIFSAIDAVYC
ARFVELVHEQKTPNFSTLLCYDRVFSDIIYTVASCTENEASRYGRFLCCMLETVTRWHSD
RATYEKECGNYPGFLTILRATGFDGGNKADQLDYENFRHVVHKWHYKLTKASVHCLETGE
YTHIRNILIVLTKILPWYPKVLNLGQALERRVHKICQEEKEKRPDLYALAMGYSGQLKSK
KSYMIPENEFHHKDPPPRNAVASVQNGPSGGPSSSSLGSASKSDESSTEETDKSRERSQC
GVKAINKASSATPKGNSSNGNSGSNSSKAVKENDKEKGKEKEKEKKEKTPATTPEARVLG
KDGKEKPKEERPNKDEKARETKERTPKSDKDKEKFKKEEKSKEEKFKTTIPSTESKSTQE
REREKEPSRERDVTKEMKSKENVKGGEKTPVSGSLKSPVPRSDNAEPEREQKRRKIDTHP
SPSHSSTVKDSLIELKESSSKLYINHTPPPMSKSKEREMDKKELDKSRERSREREKKDEK
DRKERKRDHSNNDREVPPDLTKRRKEENGTMGVSKHKSESPCESPYPNEKDKEKNKSKSS
GKEKSGDSFKSEKMDKLSSGGKKESRHDKEKIEKKEKRDSSGGKEEKKHHKSSDKHR
NT seq
4854 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgcaaccgtggtgcttcccgcagagtggataaagaactgggagaaaacaggg
agatgcgaattcttgcatttatgccggcttctcagtgaaaataaaagccatgacagttct
acttacagagattttcagcaagccttgtatgagttatcatatcatgtcattaaaggaaat
ttaaagcatgaacaagcatctaatgttcttactgatattagtgaatttcgcgaggatatg
ccctccattcttgctgatgtattctgcatactagatattgagacaaattgcttagaagaa
aaaagcaagagagactattttacacaattggtattagcatgtttgtatttagtttcagac
acagttctaaaggaacgtttggatccagatacattggaatcattggggcttatcaaacaa
tcacagcaattcaatcaaaagtcagttaaaatcaagacaaagctcttctataaacagcaa
aaattcaatttattaagagaagagaatgaaggttatgctaagctgattgctgaattggga
caagatttatctggaaatgttactagtgatttaatcttagaaaatatcaagtctttaatt
ggatgcttcaatctggatcccaacagagtactggatgtcattttagaagtatttgaatgc
aggccagaacacgatgacttctttatatctttattagaatcttacatgagtatgtgtgaa
ccgcaaacactgtgtcatattcttgggttcaaattcaagttttatcaggaaccaagtggt
gagactccatcatctttatacagagttgcagctgtacttctacaatttaatcttattgat
ttagatgatctttacgtacatcttcttccagctgatagttgcattatggatgaacataaa
cgagaaattgtggaagctaagcaaattgttagaaaacttaacatggttgtattgtcttct
gaaaaaatggatgagagagaaaaagaaaaggagaaagatgacgacaaagtagagaagcca
cctgacaaccaaaaacttggtttactagaagccttgttaatgattggtgactggcagcat
gcacagaatattatggatcagttgcctccatactatgcagcttcacataaacaaatagct
ttggctatttgcaagctcattcacataactgttgagcctctctatagaagagttggtgtt
cctaaaggtgctaaaggctcacctgttgatgctttgcaaaataagagagcaccaaagcaa
gcagagagctatgaagatttgaggagagatgtattcaatatgttctgttaccttggtcct
cacctttctcatgatcccattttatttgcaaaagtggtgcgcataggcaagtcatttatg
aaggagtttcagtctgaaggaaccaaacaagaagataaagacaaaacggaagttatcctt
agctgtttgcttagtattactgatcaggtactacttccatctctttctttgatggactgc
aatgcttgtatgtctgaggaactgtggggaatgtttaaaacatttccctatcaacataga
taccgtctgtatggccagtggaagaatgaaacctataatggtcatccacttttagtaaaa
gttaaagctcaaacaatagacagagctaaatatatcatgaagcgtctgaccaaggaaaac
gtgaaaccttcaggaaggcaaattgggaagttaagccacagcaatccaaccattttgttt
gattatatcttgtcacaaatacagaagtatgataacttaataacacctgtggttgattca
ttaaaatatcttacttcattgaattatgatgtcttggcctattgtatcatagaagcttta
gctaatccagaaaaggagagaatgaagcatgatgacacaaccatctcaagctggcttcag
agtctggctagtttctgtggtgcagtttttcgtaaatatccaattgatcttgctggtctt
cttcaatatgtggccaatcaactaaaagcaggcaaaagttttgatctgcttatactgaaa
gaagtggtacagaaaatggcaggaattgaaattacagaagaaatgacaatggagcaacta
gaggccatgactggtggggagcagctcaaagctgagggtggttattttggccagatcaga
aacactaaaaaatcttctcagagattaaaagatgccctattagatcatgatcttgctctt
cctctttgtttgcttatggctcagcaaaggaatggggtaatctttcaagagggtggagag
aaacatttgaaacttgttggaaaactatatgaccagtgtcatgataccctggtacagttt
ggtgggtttttagcatcaaatctaagcacagaagattatataaagcgagtgccttcaatt
gatgtgctctgtaatgaatttcatacaccccatgatgcagcattttttctgtctaggcca
atgtatgcacaccatatttcgtccagtgagccggggagaaatgcggcactcagaaaggaa
ggcagctggactgtaaggagcagagattcttattcaaagtatgatgaacttaaaaaatca
gaaaagggaaataaacagcaacataaagttcataagtacatttcatcatgtgagatggtg
atggctcctgtccatgaagcagtggtctccatacatgttgccaaagtctgggatgacatc
agccctcagttctatgccacattctggtcattgacgatgtatgatcttgcggttccacat
tccagctatgaacgtgaagtcaataaacttaaagtccagatgaaagcaattgatgacaat
caggaaatgcctccaaataaaaagaaaaaagagaaggaacgttgtactgcccttcaagat
aagcttcttgaagaagaaaagaaacaaatggaacatgtgcagagagttttacagagactg
aaattggaaaaggacaattggcttttagcaaaatctaccaaaaatgaaaccatcacaaaa
tttctacagctgtgtatatttcctcgatgtattttttcagcaattgatgctgtttactgt
gctcgttttgttgaattggtacatgaacagaaaactccaaatttttccacacttctttgc
tatgatcgagttttctctgacataatttacacagttgccagctgtactgaaaatgaagct
agtcgatatgggagatttctttgttgtatgttagagactgtgaccaggtggcatagtgat
cgagccacatatgaaaaggaatgtggaaactatccaggatttcttactatattacgggcg
actggatttgatggtggaaataaagctgatcaattagattatgaaaattttcgacatgtt
gttcataagtggcattataagctaaccaaggcatcagtgcattgccttgaaacaggcgaa
tatactcacatcaggaatatcttgattgtgctaacaaaaatacttccttggtacccaaaa
gttttgaatctgggtcaggctttggaaagaagagtacataaaatctgccaagaagaaaaa
gagaagaggccagatctatatgcattggcgatgggctactctgggcagttgaaaagtaaa
aagtcatacatgatacctgaaaatgagtttcatcacaaagaccctcctccgaggaatgct
gttgccagtgtacaaaatggccctagtggtgggccttcttcatcatccctaggaagtgca
tctaaatcggatgaaagcagtactgaggagactgataaatcaagggagagatctcagtgt
ggtgtgaaagctattaataaagcttctagtgccacaccaaaagggaattcaagcaatgga
aatagtggctctaacagcagcaaagctgttaaagaaaatgacaaagaaaaagggaaagag
aaagaaaaagaaaaaaaagaaaagactccagctactactccagaggccagggtacttggt
aaagatggtaaagaaaaaccaaaagaagagcggcccaataaagatgaaaaagcaagagag
accaaggaaagaacacctaagtctgacaaagacaaagaaaaattcaagaaggaagaaaaa
tctaaagaagagaaattcaagacaactatccccagcacagaatcaaaatctactcaagaa
agggaacgagagaaggagccatccagagaaagagatgtaacaaaggaaatgaaatcaaag
gaaaatgttaaaggaggagaaaaaacaccagtttctgggtccttgaagtcgcctgttccc
cgatcagataatgcagagcctgaaagggaacagaaacgccgcaaaattgatactcatcct
tctccgtcacattcctccacagtaaaggacagtctcatcgaactcaaggagtcttcatca
aagctctacattaatcatactcctccaccaatgtccaagagtaaggagagagaaatggac
aagaaagagttggacaagtcaagggaaagatccagagaaagagagaaaaaagatgaaaag
gacaggaaagagcggaaaagggatcactcaaacaatgaccgtgaagtaccaccggactta
accaagaggcggaaagaggaaaatggaacaatgggggtttcaaaacacaaaagtgaaagt
ccatgtgagtctccttatccaaatgagaaagacaaggaaaaaaataagtcaaaatcttca
ggcaaagaaaaaagtggtgactcatttaaatctgagaagatggataaactatcctccggt
ggcaaaaaggagtccaggcatgataaagaaaagatagaaaagaaagaaaaacgggacagt
tcaggaggaaaggaagagaagaaacatcataagtcctcggacaagcacagataa
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integrated database retrieval system
