Dipodomys spectabilis (banner-tailed kangaroo rat): 122110906
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Entry
122110906 CDS
T07891
Symbol
Ddx3x
Name
(RefSeq) ATP-dependent RNA helicase DDX3X
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
dsp
Dipodomys spectabilis (banner-tailed kangaroo rat)
Pathway
dsp04622
RIG-I-like receptor signaling pathway
dsp05161
Hepatitis B
dsp05203
Viral carcinogenesis
Brite
KEGG Orthology (KO) [BR:
dsp00001
]
09160 Human Diseases
09161 Cancer: overview
05203 Viral carcinogenesis
122110906 (Ddx3x)
09172 Infectious disease: viral
05161 Hepatitis B
122110906 (Ddx3x)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dsp03019
]
122110906 (Ddx3x)
03041 Spliceosome [BR:
dsp03041
]
122110906 (Ddx3x)
03036 Chromosome and associated proteins [BR:
dsp03036
]
122110906 (Ddx3x)
Enzymes [BR:
dsp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122110906 (Ddx3x)
Messenger RNA biogenesis [BR:
dsp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
122110906 (Ddx3x)
mRNA cycle factors
Common to processing body (P body) and stress granule
122110906 (Ddx3x)
Spliceosome [BR:
dsp03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
122110906 (Ddx3x)
Chromosome and associated proteins [BR:
dsp03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
122110906 (Ddx3x)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
122110906
NCBI-ProteinID:
XP_042539549
LinkDB
All DBs
Position
Unknown
AA seq
662 aa
AA seq
DB search
MSHVAVENALGLDQQFAGLDLNSSDSQAGGSTASKGRYIPPHLRNREATKGFYDKDSSGW
SSSKDKDAYSSFGSRSDSRGKSSFFSDRGSGSRGRFDDRGRSDYDGIGSRGDRGGFGKYE
RGGNSRWCDKSDEDDWSKPLPPSERLEQELFSGGNTGINFEKYDDIPVEATGNNCPPHIE
SFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILS
QIYADGPGESVRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVV
YGGADIGLQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQ
IRRIIEQDTMPPKGVRHTMMFSATFPKEIQILARDFLDEYIFLAVGRVGSTSENITQKVV
WVEEPDKRSFLLDLLNATGKNSLTLVFVETKKGADSLEGFLYNEGYACTSIHGDRSQRER
EEALHQFRSGKCPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGL
ATSFFNDKNGNITKDLLDLLVEAKQEVPSWLESLAFEHHYKGSSRGRSKSRFSGGFGARD
YRQSSGASSSSFSSSRASSSRSGGGGHGSSRGFGGGGYGSYYNSDGYGGNYNSQGVDWWS
NN
NT seq
1989 nt
NT seq
+upstream
nt +downstream
nt
atgagtcatgtggcagtggaaaatgcgctcgggctggaccagcagtttgctggcctagac
ctgaactcttcagatagtcaggctggaggaagtacagctagcaaagggcgctatatccct
cctcacttaaggaacagggaagctactaaaggattctacgacaaagactcttcagggtgg
agttctagtaaagataaagatgcatacagcagttttgggtctcgcagtgactcaagaggg
aagtctagtttcttcagtgatagaggaagtggatcaagaggaagatttgatgatcgtgga
aggagtgactatgatggtattggcagccgtggagatagaggtggctttggcaagtatgaa
cgtggtggaaacagtcgctggtgtgacaaatcagatgaagatgactggtccaaacccctc
ccaccaagtgaacgcttggaacaagaactcttttctggaggcaacactgggattaacttt
gagaaatatgatgacattcccgttgaggcaacaggcaacaactgtcccccacatattgaa
agtttcagtgatgttgagatgggagaaattattatgggaaacattgagcttactcgttat
actcgcccaactccagtacaaaagcatgctattcctattatcaaggagaaaagagacttg
atggcttgtgcccaaacagggtctggaaaaactgcagcatttctcttgcccatcttgagt
cagatttatgcagatggtccaggcgagtctgtgagggctatgaaggaaaatggaagatat
gggcgccgcaaacaatatccaatctccttggtattggcaccaacaagagaattggcagtg
caaatctatgaggaagccagaaaattctcatacaggtccagagttcgtccttgtgtggtt
tatggtggcgcagacattggtctgcagattcgagacttggaacgtggatgccacttgtta
gtagccactcctggacgtctagtggatatgatggaaagaggaaagattggattagacttc
tgcaaatacttggtgttggacgaagctgatcggatgttggatatgggttttgaacctcag
atccgtagaataattgaacaagatactatgcctccaaagggtgtccgccacactatgatg
ttcagtgctacttttcctaaggaaatacagattttagcccgtgatttcttggatgagtac
atatttctggctgtaggaagagttggatctacttctgaaaacatcacacagaaagtggtt
tgggtggaagagccagacaaaagatcatttcttcttgacctcctaaatgcaacaggcaag
aattcactgaccttggtatttgtggagaccaaaaagggtgcagattctctggagggtttc
ttatataatgaaggatatgcttgcaccagtatccatggagaccgttcacaaagagagaga
gaagaagcccttcaccaattccgctcaggaaaatgcccaattctggtggctacagcagta
gcagcaagaggactagatatttctaatgtgaagcatgttatcaattttgacttgcctagt
gatattgaagaatatgtgcatcgcataggtcgtacaggacgtgtaggaaatcttggtctt
gccacctcattcttcaatgataagaatggaaatattaccaaggatttattggatcttctt
gttgaagccaaacaagaagtgccatcttggttagaaagtttggcttttgaacaccactac
aagggtagcagtcgtggacgttccaagagtaggtttagtggagggtttggtgccagagac
tatcgacaaagtagtggggccagcagctccagcttcagcagcagccgtgcaagcagtagc
cgcagtggaggaggaggccatgggagcagcaggggcttcgggggaggtggctatggaagc
tattacaacagtgatggatatggaggaaactataactcccagggggttgactggtggagt
aacaactga
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