Dipodomys spectabilis (banner-tailed kangaroo rat): 122111063
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Entry
122111063 CDS
T07891
Symbol
Ddx39b
Name
(RefSeq) spliceosome RNA helicase DDX39B isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
dsp
Dipodomys spectabilis (banner-tailed kangaroo rat)
Pathway
dsp03013
Nucleocytoplasmic transport
dsp03015
mRNA surveillance pathway
dsp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dsp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122111063 (Ddx39b)
09122 Translation
03013 Nucleocytoplasmic transport
122111063 (Ddx39b)
03015 mRNA surveillance pathway
122111063 (Ddx39b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dsp03019
]
122111063 (Ddx39b)
03041 Spliceosome [BR:
dsp03041
]
122111063 (Ddx39b)
Enzymes [BR:
dsp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122111063 (Ddx39b)
Messenger RNA biogenesis [BR:
dsp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
122111063 (Ddx39b)
Spliceosome [BR:
dsp03041
]
Complex C
Other components
EJC/TREX
122111063 (Ddx39b)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
122111063 (Ddx39b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
122111063
NCBI-ProteinID:
XP_042539697
LinkDB
All DBs
Position
Unknown
AA seq
428 aa
AA seq
DB search
MAENDVDNELLDYEEDEVETAAGGDGAEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMC
HTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALA
RNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCR
KFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRC
IALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF
NYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDI
SSYIEQTR
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atggcagagaacgatgtggacaatgagctcttggactatgaagaggatgaggtggagacc
gcagctgggggagatggggctgaagcccctgccaagaaagatgtcaagggctcttatgtc
tccatccacagctctggctttcgagacttcttgctcaagccagagttgctccgagccatt
gtcgactgtggctttgagcatccatctgaagttcagcatgagtgtatccctcaagccatt
ctgggaatggatgtcctgtgccaggccaaatcaggcatgggaaagacagcagtgtttgtg
ttggccacactgcaacagttggaaccagttactggacaggtgtctgtgctggtgatgtgt
catactagggagttggcttttcagataagcaaggaatatgagcgcttctctaaatacatg
cccaatgtcaaggttgcagtgttttttggtggtctgtctatcaagaaggatgaagaggtg
ctgaagaagaactgcccgcatatcgtcgtggggactcctggccgtatcttagccctggct
cgaaataaaagcctcaacctcaaacacattaaacacttcatcttggatgagtgtgataag
atgcttgaacagctcgacatgcgtcgggatgtccaggaaatatttcgcatgaccccccat
gagaagcaggtcatgatgttcagtgctaccttgagcaaagagatccggccagtctgccga
aagttcatgcaagatccaatggagatcttcgtggatgatgagacgaagttgacgctgcat
ggattgcagcagtactacgtgaaactgaaggacaacgagaagaaccggaagctctttgac
cttttagatgtccttgagttcaaccaggtggtaatctttgtgaagtctgtgcaacggtgc
atcgccctggcccagcttctggtggagcagaatttcccagccattgccatccaccgtggc
atgccccaggaagagaggctttctcggtatcagcagtttaaggattttcaacggcgaatt
cttgtggccaccaacctgtttggtcgaggcatggacattgagcgggtgaacattgccttc
aactatgacatgcctgaggattctgacacatacctgcatcgggtggcgagagcaggccgg
tttggcaccaagggcttagccatcacatttgtgtcagatgagaatgatgccaagattctc
aatgatgtgcaggaccgctttgaggtcaatattagtgagctgcctgatgagatagacatc
tcctcctacattgaacagacacggtag
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integrated database retrieval system
