Dipodomys spectabilis (banner-tailed kangaroo rat): 122111103
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Entry
122111103 CDS
T07891
Symbol
Skiv2l
Name
(RefSeq) helicase SKI2W
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
dsp
Dipodomys spectabilis (banner-tailed kangaroo rat)
Pathway
dsp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dsp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122111103 (Skiv2l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dsp03019
]
122111103 (Skiv2l)
Enzymes [BR:
dsp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
122111103 (Skiv2l)
Messenger RNA biogenesis [BR:
dsp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
122111103 (Skiv2l)
mRNA degradation factors
3'-5' decay
Ski complex
122111103 (Skiv2l)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
DUF3516
Motif
Other DBs
NCBI-GeneID:
122111103
NCBI-ProteinID:
XP_042539762
LinkDB
All DBs
Position
Unknown
AA seq
1245 aa
AA seq
DB search
MMETERLVLPPPDPLNLPLRAVELGCTGRWEVLNVSGAPESTLPHGLPPCAPDLQQEAEQ
LFLSSPAWLPLHDVEHSARKWQRKTDPWSLLAALGAPVPSDLQAQRHPTTGQILGYKEVL
LENTNLSATTSLSLRRPPGPISQSLWGNPTQYPFWPGGMDEPTITDLSTREEAEEDIDFE
KDLLTVPPGFKKGMDFAPKDHPAPAPGLLSLSRLLEPLDLGGDEDESETVGQPGGPRGDT
LSASLCDAPLARASSLEDLVLKEASTVVCPVEPPKPPPQEEWAIPVDVTSPVGDFYRLIP
QPAFQWAFEPDVFQKQAILHLEQHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSP
IKALSNQKFRDFRNTFGDVGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIRDLEWVI
FDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQIYVISTV
ARPVPLEHYLFTGNSPKTQGELFLLLDSRGAFHTKGYYAAVEAKKERMSKHAQTFGAKQP
THQAGPAQDRGVYLSLLASLRTRAQLPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEIH
LFLQRCLARLRGSDRQLPQVLHMSELLHRGLGVHHSGILPILKEIVEMLFSRGLVKVLFA
TETFAMGVNMPARTVVFDSMRKHDGSTFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCKG
RVPEMADLHRMMMGKPSQLQSQFRLTYTMILNLLRVDALRVEDMMKRSFSEFPSRKDSKA
HEQALAELTKRLGALEEPDTTGQLVDLPEYYSWGEELMETRNMIQRRIMESVNGLKALSV
GRVVVVQNQVHHNALGVILQVSSNSSSRIFTTLVLCEKPMLEDPQDKEAATPDVPHPDDL
VGFKLFLPEGACDHTVAKLQPGDVAAITTKVLRVNGEKILEDFSKRQQPKFRKDPPLAVV
TTAVQELLRLAQAYPAGPPTLDPVNDLQLKDVSVVEGGLRARKLEELVRGAQCVHNPRFP
AQYLKLRERMQIQKEIERLRFLLSDQSLLLLPEYHQRVEVLRTLGYVDEAGTVKLAGRVA
CAMSSHELLLTELMFDNALSALKPEEIAALLSGLVCQSSGDPGDQLPSTLKQGVERVCAV
AKRIGEVQVACGLNQTVEEFVGELNFGLVEVVYEWARGMPFSELAGLSGTPEGLVVRCIQ
RLAEMCRSLRGAARLVGEPVLGAKMETAATLLRRDIVFAASLYTQ
NT seq
3738 nt
NT seq
+upstream
nt +downstream
nt
atgatggagaccgagcgactcgtgctgcctcccccagatcccctgaatcttcctcttcga
gccgtggaactgggatgcactgggcgctgggaggtgctgaatgtgtctggagctccagag
agtacccttccccatggccttcctccttgtgccccagatctgcagcaagaagcagagcag
ttgtttctctcatctccagcttggcttcctctgcatgatgtggaacattcagctcgaaaa
tggcagagaaagacagatccctggtctctcctggctgctctgggagccccagtcccatct
gatcttcaggcccaaagacacccaaccacaggccagatattaggctataaggaggtcctg
ctggagaacacaaacctgtcagcgactacttccttgtctcttcgccggcctccagggccc
atctctcagtcactatgggggaatccaacacagtaccctttctggccaggtgggatggat
gagcctaccataacagatctgagcactcgggaggaggctgaggaagacatagattttgag
aaagatcttctcactgtcccacctggcttcaagaaaggcatggattttgctccaaaggat
cacccagctccagcacctgggctacttagcctcagtcgtctgctagaacctctagatctg
gggggtgatgaggatgaaagtgagacagtgggacagccaggaggtcctagaggggacact
ctttcagcctctctgtgtgatgctcctctggcccgagcaagcagcttggaggacctagtg
ttgaaggaagcatctacagttgtatgccctgtggagcctcccaaacctccacctcaggag
gaatgggccattcctgtggatgtcacctcccctgttggtgatttctaccgcctcattcca
cagccagcctttcagtgggcatttgagccagatgtgtttcagaaacaggccatcctgcac
ttggaacagcatgactctgtcttcgttgcagcgcacacatctgcagggaagacagttgta
gctgaatatgccattgcactggcccagaaacatatgacacgaaccatttatacttcaccc
atcaaggccttgagcaaccagaaattccgagactttcgaaacacatttggggatgtgggg
ctactcactggagatgtgcagctgcacccagaggcctcctgccttatcatgacaacagag
atccttcgctccatgctgtacagtggatcagatgtcatccgggacctggaatgggtcatc
ttcgacgaggttcattatatcaatgatgctgagcgtggggtcgtgtgggaggaggtgctc
atcatgttgccagaccatgtctccatcatccttctgagtgctactgtccccaacgcccta
gagtttgctgactggattggacggctgaagcgtcgccagatctatgtgattagcacagtt
gcccggcctgtccccctggagcactatctcttcacaggaaatagccccaagacccagggg
gaactcttcttgctgctggattcccgaggtgccttccacaccaaagggtactatgcagct
gtggaggccaagaaggagagaatgagcaaacatgctcagacctttggggccaagcagccc
acacaccaggcagggcctgcgcaggaccgaggagtgtacctgtccctcctggcctcactc
cgcacccgagcccagctgcctgtggtagtgttcaccttctctcggggccgttgtgatgag
caggcttcgggcctcacctcgcttgacctcactacaagttcagagaagagtgagatccac
ctctttctgcagcgatgtctggcgcgtctccgtggctctgaccgacagctgccccaggtc
ctgcacatgtctgagctcctgcatcggggcttgggtgtacaccacagtggcatcctgccc
atcctcaaggagattgtggaaatgctgttcagccgtggcttggtcaaggtcttgtttgcc
actgagacctttgccatgggtgtaaacatgccagcacgtacagtggtgtttgactccatg
cgcaagcatgatggctccaccttccgggacctgctccctggggaatacgtgcagatggca
ggccgggcaggccggagaggcctggaccccacaggcactgtcatcttgctctgcaagggt
cgtgtgcctgagatggcagatctgcaccgcatgatgatggggaagccttcccagctgcag
tcccagttccgcctcacatatactatgatcctcaacctgctacgggtggatgccctcagg
gtggaggacatgatgaagaggagtttctctgagtttccatcccgcaaagacagcaaggcc
catgagcaggctctagctgaactaactaaaaggttgggggccttggaggagcctgacacg
actggccaactggttgatctgcctgagtattacagctggggagaggaactgatggagacc
cggaatatgatccaacgacgcatcatggagtctgtgaatgggctaaaagctctctcagtg
ggaagagtggtggttgtgcagaatcaggtgcatcacaacgcattgggtgtgatcctgcag
gtctcctcaaactcctccagcagaatcttcacaaccctggtcttatgtgaaaagcctatg
ttggaggatccacaggacaaggaagcagccactccagatgtgccccacccagatgatctg
gtgggcttcaagctcttcttgcctgaaggggcctgtgaccacactgtggccaagctccag
ccaggagacgtggctgcaatcaccaccaaggtgctccgggtgaatggggagaagatctta
gaggatttcagcaagagacagcaaccgaaattcagaaaggatcctccccttgcagtggtc
accactgctgtccaggaattgcttcgtctggctcaggcctacccagcaggaccccctacc
cttgaccctgtgaatgacttgcagctcaaggatgtgtcagtggtagaaggtggccttcgg
gcccggaagttggaggagctggtccggggggctcagtgtgtgcacaatccccgttttcct
gcccagtacctgaagctgagggagcgaatgcagattcagaaggagatagagcgcctgcgc
ttcctactgtcagatcagtcactgctgctgctccctgagtaccaccaacgagtagaggtg
ctccgaaccctgggttatgtggacgaggcaggcactgtgaagctggcaggacgggtggct
tgtgccatgagcagccatgagctgctcctcactgagctcatgtttgacaatgcattgagc
gctctgaagcctgaggagattgcagccctgctctctggcctggtttgccagagctctggg
gatcctggggatcagcttccaagcaccctcaaacagggtgtggaacgtgtctgtgctgtg
gccaagcggattggtgaagtccaggtagcctgtggcttgaaccagacagtggaagaattt
gtgggagagctgaattttgggctggtcgaggttgtgtacgagtgggcccggggtatgccc
ttctctgagttagcaggactctcgggaaccccagaaggcctggtggtgcgctgcatccag
cgcctggctgagatgtgccgctcactgagaggggctgcccgtctggtaggagagcctgtg
ctgggtgccaagatggagacagcagccaccctgctacgacgggacatcgtctttgcagcc
agcctttatacccagtga
DBGET
integrated database retrieval system
