Dipodomys spectabilis (banner-tailed kangaroo rat): 122111297
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Entry
122111297 CDS
T07891
Symbol
Dhx16
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
dsp
Dipodomys spectabilis (banner-tailed kangaroo rat)
Pathway
dsp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dsp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122111297 (Dhx16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dsp03041
]
122111297 (Dhx16)
Enzymes [BR:
dsp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
122111297 (Dhx16)
Spliceosome [BR:
dsp03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
122111297 (Dhx16)
Complex C
U4/U6.U5 tri-SnRNP related factors
122111297 (Dhx16)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
AAA_19
AAA_30
SecA_DEAD
Flavi_DEAD
nSTAND3
SRP54
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
122111297
NCBI-ProteinID:
XP_042539964
LinkDB
All DBs
Position
Unknown
AA seq
1044 aa
AA seq
DB search
MATPAELERWVQEELHSVLGLSERHVAQFLIGTAQRCASAEAFVQRLRDTDTLDLSGPAR
DFALRLWSKVPRKPVVEKPARVAEREARALLEKNRSYKLLEDSEESSEETVSRSGSSLQK
KRKKRKHLRKKHYDDEEEEEEDISETGKKKKEENKEQTKKAESEDEWERTERERLQDLEE
RDAFAERVRQRDKDRTRNVLERSDKKAYEEAQKRLKMAEEDRKAMVPELRKKSRREYLAK
REREKLEDLEAELADEEFLFGDVELSRHERRELKYKRRVRDLAREYRAAGEQEKLEATNR
YHMPKETRGQPARAVEVVEEESSAPGEEQRRWEEARLGAASLKFGARDAASQEPKYQLVL
EEEETIEFVCATQLQGDEEPSAPPPSAQAQQKESIQAVRRSLPVFPFREELLAAIANHQV
LIIEGETGSGKTTQIPQYLFEEGYTKKGMKIACTQPRRVAAMSVAARVAREMGVKLGNEV
GYSIRFEDCTSERTVLRYMTDGMLLREFLSEPDLASYSVVMVDEAHERTLHTDILFGLIK
DVARFRPELKVLVASATLDTARFSTFFDDAPVFRIPGRRFPVDIFYTKAPEADYLEACVV
SVLQIHVTQPPGDILVFLTGQEEIEAACEMLQDRCRRLGSKIRELLVLPIYANLPSDMQA
RIFQPTPPGARKVVVATNIAETSLTIEGIIYVLDPGFCKQKSYNPRTGMESLTVTPCSKA
SANQRAGRAGRVAAGKCFRLYTAWAYQHELEETTVPEIQRTSLGNVVLLLKSLGIHDLVH
FDFLDPPPYETLLLALEQLYALGALNHLGELTTTGRKMAELPVDPMLSKMILASEKYSCS
EEILTVAAMLSVNNSIFYRPKDKVVHADNARVNFFLPGGDHLVLLNVYTQWAESGYSSQW
CYENFVQFRSMRRARDVREQLEGLLERVEVGLSSCQGDYIRVRKAITAGYFYHIARLTRS
GYRTVKQQQTVFIHPNSSLFEQQPRWLLYHELVLTTKEFMRQVLEIESSWLLEVAPHYYK
AKEVEDPHTKKMPKKIGKTREELG
NT seq
3135 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgccggcggagctggagcgctgggtgcaggaggagctgcactcggtgctgggg
ctgagcgagcggcacgtcgcgcagttcctcatcggcacggcgcagcgctgcgcctcggcc
gaggcgttcgtgcagcgcctgcgagacaccgacaccttggacctcagcgggcccgctcgc
gacttcgccctccggctctggagcaaggtaccacggaaacccgtggtagaaaagccagct
agggtagcagagcgagaggctcgagccctgctagagaagaacagatcttacaagttgttg
gaagatagtgaagaaagcagtgaggaaactgtgagtcggagtgggagcagtctccagaaa
aagcgtaaaaaacggaaacacctcaggaagaaacactatgatgatgaggaagaagaagag
gaagacatttctgagacaggaaaaaagaagaaagaggagaataaagagcagacaaagaaa
gcagaatcagaggatgagtgggagcggacagagcgagagcgtcttcaggacctggaggaa
cgtgatgctttcgcagagcgagttcggcagcgggacaaggatcggactcgcaatgtccta
gagcgctcagacaagaaggcatatgaagaggctcagaagcgcctcaagatggctgaggaa
gaccggaaagccatggtccctgagctgaggaagaaatcccgccgagaatacctggccaaa
cgggagcgagagaagctggaggacctggaggcagagctggctgatgaggaatttcttttt
ggagatgtggaactcagccggcatgaacggcgggagctcaaatacaagcggcgagtgcgg
gatctggcccgggaataccgggcagccggtgagcaggagaagctggaggccaccaaccgc
taccacatgcccaaggagacccggggacagccagctcgagctgtagaggtagtagaagag
gaatcaagtgctcctggggaagaacagaggcgatgggaggaggcccgacttggggcagca
tccttgaaatttggggctcgagatgctgcctcccaggagcccaagtatcagctagtgctg
gaagaggaggagaccatcgagtttgtctgcgccactcagctccagggtgatgaggagccg
tcagctccccctccatcagcacaggcccagcagaaggagtccatccaggccgtccgtcgc
agcctccctgtgttcccattccgggaagagctcctggctgccatcgctaatcaccaagtt
ctcatcatcgaaggggagactggctcagggaagaccacccagatcccacagtacctgttt
gaggagggctacacgaagaagggtatgaagattgcctgcacccagccccgcagagtggca
gccatgagtgtggctgccagagtggcccgggagatgggtgtaaagcttgggaatgaggtt
ggctacagcatccgctttgaggactgcacatcagagcgaacagtcctccgctacatgaca
gatgggatgcttctccgggagttcctctctgaacctgacctagccagctacagtgtggtg
atggtggatgaagctcatgaacggaccctgcacacagacattctctttgggctgatcaag
gatgtggctcgcttccggcctgagctcaaggtcctggtagcttctgccacattggacact
gcccggttttctaccttctttgatgatgcccctgtgtttcgaatccctggccggaggttt
ccagttgacatcttctataccaaggctccagaggctgactacctggaagcctgtgttgtg
tctgtgctgcaaatccacgtgacacagccccctggggacatcctggtgttcctgactgga
caggaggagatcgaggctgcttgtgagatgctccaggatcgctgccgtcggctgggctcc
aaaatccgggagctcctggtgctgcccatttatgccaacctgccctctgacatgcaggct
cgcatcttccaacctacgcctcctggagcccgaaaggtagttgtggcaacaaacattgca
gagacatcactcaccatcgagggcatcatttatgtacttgatccagggttctgtaagcag
aagagctacaatccccgcacaggcatggagtcgctcactgtcacaccctgcagcaaggct
tcagccaatcagcgggctgggcgagcgggtcgagtggctgcagggaagtgcttccgtctg
tacacagcctgggcctatcagcatgagctggaagagaccacagtgcctgagatccagagg
accagcctgggcaatgttgtgttactgctcaagagcttagggatccatgacctggtgcac
tttgacttcctggacccgccaccatatgagaccctgctgctggctttggaacaactgtat
gctctaggagcccttaatcaccttggggagctcaccacgactggtcgaaagatggcagag
ctgcccgtagaccccatgctgtctaaaatgattttggcctctgagaagtacagctgttca
gaggagatcctgacagtggctgccatgctctctgtcaacaactccatcttctaccggcct
aaggacaaggttgtccatgctgacaatgcccgagtcaacttcttcctccctggtggggac
cacctggttctgctgaacgtgtatacacagtgggctgagagtggctactcttcccaatgg
tgctatgagaactttgtacagttcagatccatgcgccgagcccgggatgtgcgggaacag
ctggaagggctcctggagcgggtggaagttggtctgagctcctgccagggggactacatc
cgggtccgcaaggctatcactgctggttacttttaccacatagcacggctgacacgtagt
ggttaccgcacagtgaaacagcagcagacagtgttcatccatcccaactcctcactcttt
gagcagcagccacgctggttgctctaccatgaactggtcttgaccaccaaggagtttatg
agacaggtgttggagattgagagcagttggcttttggaagtggctccccactactataag
gccaaggaggtagaagatccccatacaaagaaaatgcccaaaaaaataggcaagacacga
gaagagctggggtag
DBGET
integrated database retrieval system
