Dipodomys spectabilis (banner-tailed kangaroo rat): 122112009
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Entry
122112009 CDS
T07891
Symbol
Smc1a
Name
(RefSeq) structural maintenance of chromosomes protein 1A
KO
K06636
structural maintenance of chromosome 1
Organism
dsp
Dipodomys spectabilis (banner-tailed kangaroo rat)
Pathway
dsp04110
Cell cycle
dsp04114
Oocyte meiosis
Brite
KEGG Orthology (KO) [BR:
dsp00001
]
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
122112009 (Smc1a)
04114 Oocyte meiosis
122112009 (Smc1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
dsp03036
]
122112009 (Smc1a)
Chromosome and associated proteins [BR:
dsp03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Cohesin complex
122112009 (Smc1a)
Meiosis-specific proteins
Cohesin complex and associated proteins
122112009 (Smc1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SMC_N
SMC_hinge
AAA_23
AAA_21
AAA_15
AAA_29
ABC_tran
Mce4_CUP1
Motif
Other DBs
NCBI-GeneID:
122112009
NCBI-ProteinID:
XP_042540758
LinkDB
All DBs
Position
Unknown
AA seq
1233 aa
AA seq
DB search
MGFLKLIEIENFKSYKGRQIIGPFQRFTAIIGPNGSGKSNLMDAISFVLGEKTSNLRVKT
LRDLIHGAPVGKPAANRAFVSMVYSEEGAEDRTFARVIVGGSSEYKINNKVVQLHEYSEE
LEKLGILIKARNFLVFQGAVESIAMKNPKERTALFEEISRSGELAQEYDKRKKEMVKAEE
DTQFNYHRKKNIAAERKEAKQEKEEADRYQRLKDEVVRAQVQLQLFKLYHNEVEIEKLNK
ELASKNKEIEKDKKRMDKVEDELKEKKKELGKMMREQQQIEKEIKEKDSELNQKRPQYIK
AKENTSHKIKKLEAAKKSLQNAQKHYKKRKGDMDELEKEMLSVEKARQEFEERMEEESQS
QGRDLTLEENQVKKYHRLKEEASKRAATLAQELEKFNRDQKADQDRLDLEERKKVETEAK
IKQKLREIEENQKRIEKLEEYITTSKQSLEEQKKLEGELTEEVEMAKRRIDEINKELNQV
MEQLGDARIDRQESSRQQRKAEIMESIKRLYPGSVYGRLIDLCQPTQKKYQIAVTKVLGK
NMDAIIVDSEKTGRDCIQYIKEQRGEPETFLPLDYLEVKPTDEKLRELKGAKLVIDVIRY
EPPHIKKALQYACGNALVCDNVEDARRIAFGGHQRHKTVALDGTLFQKSGVISGGASDLK
AKARRWDEKAVDKLKEKKERLTEELKEQMKAKRKEAELRQVQSQAHGLQMRLKYSQSDLE
QTKTRHLALNLQEKSKLESELANFGPRINDIKRIIQSREREMKDLKEKMNQVEDEVFEEF
CREIGVRNIREFEEEKVKRQNEIAKKRLEFENQKTRLGIQLDFEKNQLKEDQDKVHMWEQ
TVKKDENEIEKLKKEEQRHMKIIDETMAQLQDLKNQHLAKKSEVNDKNHEMEEIRKKLGG
ANKEMTHLQKEVTAIETKLEQKRSDRHNLLQACKMQDIKLPLSKGTMDDISQEEGGSQGE
DSVSGSQRTSNIYAREALIEIDYGDLCEDLKDAQAEEEIKQEMNTLQQKLNEQQSVLQRI
AAPNMKAMEKLESVRDKFQETSDEFEAARKRAKKAKQAFEQIKKERFDRFNACFESVATN
IDEIYKALSRNSSAQAFLGPENPEEPYLDGINYNCVAPGKRFRPMDNLSGGEKTVAALAL
LFAIHSYKPAPFFVLDEIDAALDNTNIGKVANYIKEQSTCNFQAIVISLKEEFYTKAESL
IGVYPEQGDCVISKVLTFDLTKYPDANPNPNEQ
NT seq
3702 nt
NT seq
+upstream
nt +downstream
nt
atggggttcctgaaactgattgagatcgagaactttaagtcgtacaagggtcgacagatt
atcggaccatttcagaggttcaccgccatcattggacccaatggctctggtaagtcaaat
ctcatggatgccatcagctttgtactaggagaaaaaaccagcaaccttcgagtaaagacc
ctacgggatctgattcatggtgctcctgtgggcaagccagctgccaatcgggcctttgtc
agcatggtctattctgaggaaggtgctgaagatcgcacctttgcccgtgtcattgtagga
ggttcttctgaatacaagatcaacaacaaagtggtccaactacatgaatacagtgaagag
ttagagaagttgggcattctcatcaaagctcgtaacttcctcgtcttccagggtgctgtg
gagtctattgccatgaagaaccccaaggagaggacagctctatttgaagagattagtcgc
tctggggagctggcacaggagtatgataagcgaaagaaggaaatggtaaaggctgaagaa
gatacacaatttaattatcatcgtaagaaaaatattgcagctgaacgtaaggaggccaaa
caggagaaagaagaggcagatcgttaccagcgcctgaaggacgaggtggtacgtgctcaa
gtacagttgcagctcttcaagctttaccataatgaagtagaaattgaaaaactcaataag
gaactggcttctaagaacaaagagattgagaaggacaagaaacggatggacaaagtagag
gatgagctgaaggagaagaagaaagagctgggcaaaatgatgcgggagcagcagcagatt
gagaaggagatcaaggagaaggattcagagctgaatcagaagcgacctcagtacatcaaa
gctaaggagaatacctcccacaagattaaaaagctggaagcagcgaaaaaatctcttcag
aatgctcagaagcactataagaagcgtaaaggtgatatggatgagctggagaaggagatg
ttatctgtggagaaggcccgacaggagtttgaagaacggatggaagaggagagtcagagt
cagggcagagacttgaccctggaagagaaccaggtgaagaaataccatcggttgaaagaa
gaagccagcaagagagcagctactttggcccaagagctagagaagttcaatagagaccag
aaagctgatcaggaccgtctggatctagaagagcggaagaaagtagaaacagaggccaag
atcaagcaaaagcttcgagagattgaagagaatcagaaacggattgagaagctggaagaa
tacattacgaccagcaagcaatccctagaggagcagaagaagttagagggagaactgaca
gaggaagtagagatggccaaacggcgtattgatgagatcaataaggaactaaatcaggtg
atggagcagttgggagatgcccgtattgaccgccaggagagcagtcgccagcagcgaaag
gcagagataatggaaagcatcaagcgcctttaccctggctctgtgtatggccgcctcatt
gacctctgccagcccacacaaaagaaataccagatagcggtgacaaaggttttgggcaag
aacatggatgccattattgtagattccgagaaaacaggccgagactgtattcagtatatc
aaggagcagcgtggggagcctgagaccttcttgcctcttgactacctagaggtgaaacct
acagatgagaaacttcgggagctcaagggagccaagctagtgattgatgtgatccgctat
gagccacctcatattaaaaaagccctgcagtatgcttgtggcaatgcccttgtctgtgac
aatgtggaagatgcccgtcggattgcctttggaggccaccagcgccacaagacggtggca
ctcgatgggaccctgttccagaagtcaggagtcatctctggtggggccagtgacctgaag
gccaaggcaaggcgctgggatgagaaagcagtggacaagttgaaagaaaagaaggaacgt
ttgacagaggagctgaaagaacagatgaaagcaaagaggaaagaggcagagctgcgtcag
gtgcagtctcaggcccatggactgcagatgcgactcaagtactcacagagtgacctggaa
cagactaagacaagacatctggccctaaatctccaggaaaagtctaagctggagagtgag
ctggccaactttgggcctcgcattaatgatatcaagagaatcattcaaagccgcgagaga
gaaatgaaggacttgaaggagaagatgaaccaggtagaagatgaggtgtttgaagagttt
tgtcgggagattggtgtgcgcaacatccgggagtttgaagaagagaaggtgaagcggcag
aatgaaattgccaagaagcgtttggagtttgaaaatcagaagactcgcttgggcatccag
ttggattttgaaaagaaccaattgaaggaggaccaggataaagtacacatgtgggaacag
acagtgaagaaggatgaaaatgagatagaaaagctcaagaaggaagaacaaagacatatg
aagatcatagatgagaccatggcccagctacaagatctgaagaatcagcacctggccaag
aagtctgaagtgaatgacaagaaccatgaaatggaggagattcgtaagaaactgggtggt
gccaataaggaaatgacccatttacagaaggaggtgacagccattgagactaagctggaa
cagaagcgcagtgaccgccacaacttgctacaggcctgcaagatgcaagacatcaagttg
ccactgtcaaagggcaccatggatgatatcagtcaagaagagggtggctcccagggagag
gattcagtaagtggctcccagagaacttccaatatctatgcacgagaggccctcattgaa
attgactatggcgacctgtgtgaggatctcaaggatgcacaggccgaggaagagatcaag
caggagatgaacacattacaacagaagctaaatgagcagcagagtgtacttcagcgtatt
gctgctcccaacatgaaggccatggaaaagctggaaagtgttcgtgacaagttccaggag
acttcagatgagtttgaggcagcacgaaagcgagcaaagaaggccaagcaggcgtttgaa
cagattaagaaggagcgttttgaccgtttcaatgcctgttttgaatctgtggctaccaac
attgatgagatctataaggctctgtcccgcaatagcagtgcccaggcattcctgggccct
gagaaccctgaagagccctacttggatggcatcaactacaattgtgtggctcctggcaaa
cgctttcggcctatggataacttgtcaggtggcgaaaagacagtggcagcactggccttg
ctgtttgccatccatagctacaagccagcccccttctttgtcctggatgagattgatgct
gctttggataacaccaacatcggcaaggtggcaaattacatcaaggagcagtcaacttgc
aacttccaggccattgtcatctccctgaaggaggaattctacaccaaggctgaaagcctc
attggagtctatcctgagcaaggggactgtgtgatcagcaaagtcttgaccttcgacctc
accaagtacccagatgccaaccccaaccccaacgagcagtaa
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