Dipodomys spectabilis (banner-tailed kangaroo rat): 122112392
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Entry
122112392 CDS
T07891
Symbol
Ddx18
Name
(RefSeq) ATP-dependent RNA helicase DDX18 isoform X1
KO
K13179
ATP-dependent RNA helicase DDX18/HAS1 [EC:
5.6.2.7
]
Organism
dsp
Dipodomys spectabilis (banner-tailed kangaroo rat)
Brite
KEGG Orthology (KO) [BR:
dsp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dsp03041
]
122112392 (Ddx18)
03009 Ribosome biogenesis [BR:
dsp03009
]
122112392 (Ddx18)
Enzymes [BR:
dsp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122112392 (Ddx18)
Spliceosome [BR:
dsp03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
122112392 (Ddx18)
Ribosome biogenesis [BR:
dsp03009
]
Eukaryotic type
90S particles
Helicases
122112392 (Ddx18)
Pre-60S particles
122112392 (Ddx18)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
ResIII
Helicase_C_2
Motif
Other DBs
NCBI-GeneID:
122112392
NCBI-ProteinID:
XP_042541110
LinkDB
All DBs
Position
Unknown
AA seq
668 aa
AA seq
DB search
MSYLQMKLLRKKIEKRNRKLRQRNIKLQEKLQGASDEGLSETQNENVPEETLKVGKIKKV
KRSVNVSLSEVQNGDISEDTVENVTLQPKESNTSTKGEVEAAQSPNTESKKKKRKKRKTM
NDAEPAKDTKKAKIEEGTKTPPKETEDRVEKPNSKDDDSEVPSLPMGLTGAFEDTSFDSL
TYLVNENTLKAIKEMGFVRMTEIQHKSIKPLLEGRDLLAAAKTGSGKTLAFLIPAIELIV
KLKFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLCNGI
NIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPVRRQTML
FSATQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYVVCPSEKRFLLLFTFLKK
NRKKKVMVFFSSCKSVKYHYELLNYIDLPVLAIHGRQKQNKRTTTFFQFCNADSGILLCT
DVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGRGHALLILRPEELGFLRYLR
QSKVPLNEFDFSWSKISDIQSQLEKLIEKNYFLHKSAQEAYKSYIRAYDSHSLKQIFNVN
NLNLPQVALSFGFKVPPFVDLNVNSNEGKLKKRGGGGGFGYQKTKKVEKSKIFKHISRKS
SDKRQFSH
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtacctacagatgaaacttctgcgcaagaagatcgagaagaggaatcgcaagttg
cgacagcgaaacataaagctgcaggaaaagctgcaaggggcatcagatgagggcctgtca
gaaactcaaaatgaaaatgtgcctgaagaaacattgaaagttggaaagattaagaaagtt
aaacgttctgtaaatgtgagtttgtcagaagtacaaaatggagatatctcagaagacact
gtggaaaatgtaacacttcaaccaaaagaatctaacacttcaaccaaaggagaagtcgaa
gcagcacagtctcctaatacagaatcaaaaaagaaaaaaaggaaaaaaaggaaaacgatg
aatgatgccgagcctgccaaagatactaaaaaggcaaaaattgaagaaggcaccaagact
cctcctaaagaaacagaagaccgtgttgagaagcccaacagtaaggacgatgatagtgaa
gtacccagcctgcccatgggactgacaggtgcctttgaggatacttcattcgattctcta
acttatcttgtcaatgaaaataccctgaaggcaataaaagaaatgggctttgtacgcatg
actgagattcaacacaaaagtattaaaccactcctagagggcagggatcttttagcagct
gcaaaaacaggaagtggcaaaaccctggcatttctcattcctgctattgagctcattgtt
aagttaaagttcatgcccaggaatggaacaggagtcctcattctctcacccactcgagaa
ctggccatgcagacttttggagttcttaaggagctaatgacgcaccacgttcacacatac
gggttgatcatgggtggtagtaacagatctgctgaagcacagaaactctgtaatgggatc
aacatcattgtggccacaccaggccgtcttctagaccatatgcagaatactccaggattt
atgtataaaaatctacagtgtctagttattgatgaggctgatcgtatcttagatgttgga
tttgaagaagaattgaagcagataattaaacttttgccagtacgcagacaaaccatgctc
ttttctgccacacaaactcgaaaagttgaagatttggcaaggatttcactgaaaaaggag
ccattgtatgttggtgttgatgatgataaagccaatgctacagtggatggtcttgagcag
ggctatgttgtttgtccctctgaaaagagattccttctgctctttacattccttaagaag
aatcgaaagaagaaagtgatggttttcttttcatcttgtaaatctgtgaaataccactat
gagctgctgaactacattgatttgccagttttggccattcatggaaggcagaaacaaaac
aagcgtacaaccacattcttccaattctgtaatgcagactcagggatattgttgtgtaca
gatgtggcagcaagaggtttagacattcctgaagtcgattggattgttcagtatgaccct
ccagatgatcctaaggaatacattcatcgtgtaggtagaacagccagaggcctgaatgga
agagggcatgccttacttattttgcgcccagaagaattgggtttccttcgttacttgagg
caatccaaggttccactaaatgaatttgacttttcttggtcgaaaatttctgacattcag
tctcagcttgaaaaactcattgaaaagaactattttcttcataagtccgcccaggaagca
tacaagtcatacatacgagcatatgactcccattctctgaagcagatcttcaatgttaat
aacttaaatttgcctcaggttgctctgtcgtttggtttcaaggtgccaccttttgttgat
ctgaacgtgaacagcaatgaaggcaagcttaagaagagaggaggtggcggaggatttggc
taccagaaaaccaagaaagtagagaagtccaaaatcttcaagcacattagcaggaagtct
tcagataagaggcagttctctcactaa
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