Dipodomys spectabilis (banner-tailed kangaroo rat): 122112412
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Entry
122112412 CDS
T07891
Symbol
Ercc3
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPB
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
dsp
Dipodomys spectabilis (banner-tailed kangaroo rat)
Pathway
dsp03022
Basal transcription factors
dsp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dsp00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
122112412 (Ercc3)
09124 Replication and repair
03420 Nucleotide excision repair
122112412 (Ercc3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dsp03021
]
122112412 (Ercc3)
03400 DNA repair and recombination proteins [BR:
dsp03400
]
122112412 (Ercc3)
Enzymes [BR:
dsp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
122112412 (Ercc3)
Transcription machinery [BR:
dsp03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
122112412 (Ercc3)
DNA repair and recombination proteins [BR:
dsp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
122112412 (Ercc3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
DEAD
SNF2-rel_dom
AAA_22
AAA_34
Motif
Other DBs
NCBI-GeneID:
122112412
NCBI-ProteinID:
XP_042541134
LinkDB
All DBs
Position
Unknown
AA seq
779 aa
AA seq
DB search
MGKRDRDKKKSKKRHHEDEEEDDDDAPGNESQEAVPSAAGKQVDESGTKVDEYGAKDYRV
QMPLKDDHASRPLWVAPDGHIFLEAFSPVYKYAQDFLVAIAEPVCRPTHVHEYKLTAYSL
YAAVSVGLQTSDITEYLRKLSKTGVPDGIIQFIKLCTVSYGKVKLVLKHNRYFVESSHPD
VIQHLLQDPVIRECRLRNAEGEATELITETFTSKSAISKSADGSSGPSTSQATDPQGKSD
IPTDLFDFYEQMDKDEEEEEETQTVSFEVKQEMIEELQKRCIHLEYPLLAEYDFRNDSVN
PDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTAACTVRKRCLV
LGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGCSIAISTYSMLGHTTKRSWEA
ERVMEWLKTQEWGLMILDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKIVDLNFL
IGPKLYEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNKFRA
CQFLIKFHERRNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNPKIN
TIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAFFYSLV
SQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEDEELAFSTKEEQQQLLQKVLAASDLD
AEEEVVAGEFGSKSSQVSRRFGTMSSMSGADDTVYMEYHSSRSKASTKHVHPLFKRFRK
NT seq
2340 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaaagagaccgcgacaagaagaagtccaagaagaggcaccatgaggatgaggag
gaagacgacgacgacgcccctgggaacgaatctcaggaggcggtgccctcggccgccggc
aagcaagtggatgagtccggcaccaaagtggacgaatatggagccaaggactacagggtg
cagatgcccctgaaggacgaccacgcctcccggcccctctgggtggctcccgatgggcac
atcttcttggaagccttctctccagtttacaaatatgctcaagatttcctggtggctatt
gcagaaccagtttgtcgtccaacccatgtgcatgagtacaaactaactgcctactccctg
tatgcagctgtcagtgttgggctgcaaaccagtgatatcactgagtatctcagaaagctc
agcaagactggagttccagatggaattattcaatttattaagttatgtactgtcagctat
ggaaaagtcaaactggtcctgaagcacaacaggtactttgttgaaagctcccacccggat
gtcatccaacatcttcttcaagaccccgtgatccgggaatgccgcctgaggaatgctgaa
ggggaggccaccgaactcatcactgagactttcacaagcaaatctgctatttctaaaagt
gcagatggcagcagtgggccttcaacttcccaggcgacagatccacagggtaaatctgac
atccccacagacctgtttgacttctatgagcaaatggataaagatgaggaagaagaagaa
gagacacaaacagtgtcatttgaagtcaagcaggaaatgattgaggaactccagaaacgt
tgcatccacctggagtaccctctgttggcagaatatgacttccggaatgattctgtcaac
cccgatatcaacattgacctgaaacctacagctgtcctcagaccctaccaggagaagagc
ctgcggaagatgtttgggaatgggcgggcacggtctggagtcattgttcttccttgtggt
gctgggaagtccctagttggtgtgactgctgcatgtactgtcaggaaacgttgtttggta
cttggcaactcggccgtatctgtagaacagtggaaagcccaattcaagatgtggtctacc
attgatgacagccagatctgccgctttacctcagatgccaaggacaagcccataggctgc
tccattgcaatcagtacatactccatgctgggccacaccaccaaaaggtcctgggaggct
gagcgggtcatggagtggctcaaaacccaagagtggggcctcatgatactggatgaagtg
catactattccagccaagatgttccgaagggtgctcaccattgtgcaggcccactgcaag
ttaggtttgactgcaactcttgtccgggaagatgacaaaattgtcgacttaaattttctg
attgggcccaaactctatgaagccaactggatggagcttcaaaacaatggctatattgcc
aaagtccagtgtgctgaggtttggtgtccaatgtcccctgagttttaccgggagtatgtg
gcaatcaaaacgaagaaacgaatcttattatacaccatgaaccccaacaagttcagagct
tgccagtttctgattaagtttcatgaaaggaggaacgacaagattattgtctttgctgac
aatgtatttgccttgaaggaatatgccattcggctaaacaaaccttatatctatggtcct
acatcccaaggagaaaggatgcaaattctccaaaatttcaagcacaaccccaaaatcaac
actatcttcatatccaaggtaggtgacacatcctttgatctgccagaagcaaatgttctc
attcagatatcatcccacggtggctccaggcggcaagaggcccagaggctcggacgggtg
ctccgtgccaaaaaaggcatggttgcagaggagtacaatgccttcttctactcactggtt
tcccaggacactcaggaaatggcatattctaccaaacggcagagattcttggtagatcag
ggttatagctttaaggtgatcaccaagcttgctggcatggaggacgaagagttggcattt
tccacaaaagaggagcagcagcagctcctacagaaagtcctggcagccagtgatctggat
gctgaagaggaggtggtagcaggagaatttggctccaagtccagtcaggtgtctcggcgc
tttggcaccatgagctccatgtctggggcagatgacactgtgtacatggagtatcactcc
tcaaggagcaaggcttcaactaaacacgtgcacccgctcttcaagcgctttaggaagtga
DBGET
integrated database retrieval system
